Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29924 * 124.87365 * 2 1 4 4 C 1.36065 * 108.80548 * 179.97438 * 3 2 1 5 5 C 1.39712 * 133.74125 * 180.02562 * 4 3 2 6 6 C 1.37767 * 119.85755 * 180.02562 * 5 4 3 7 7 Br 1.89101 * 119.76751 * 179.97438 * 6 5 4 8 8 C 1.38728 * 120.46621 * 359.79051 * 6 5 4 9 9 C 1.38502 * 120.38331 * 0.45683 * 8 6 5 10 10 N 1.40015 * 120.12243 * 179.78746 * 9 8 6 11 11 C 1.34778 * 119.99860 * 325.34232 * 10 9 8 12 12 O 1.21302 * 119.99743 * 4.45952 * 11 10 9 13 13 C 1.50695 * 120.00026 * 184.46410 * 11 10 9 14 14 S 1.81001 * 109.47222 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00163 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00019 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99812 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99888 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47175 * 90.00331 * 19 17 15 21 21 H 1.48508 * 109.47111 * 209.99839 * 19 17 15 22 22 H 1.48495 * 109.47317 * 329.99892 * 19 17 15 23 23 C 1.39265 * 119.75656 * 359.51222 * 9 8 6 24 24 O 1.34198 * 124.87601 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47109 * 270.03752 * 1 2 3 26 26 H 1.09005 * 109.47403 * 30.03375 * 1 2 3 27 27 H 1.08996 * 109.47282 * 150.03781 * 1 2 3 28 28 H 1.08006 * 120.07165 * 359.97438 * 5 4 3 29 29 H 1.07996 * 119.80673 * 180.27184 * 8 6 5 30 30 H 0.96993 * 119.99985 * 145.33866 * 10 9 8 31 31 H 1.08994 * 109.47455 * 299.99857 * 13 11 10 32 32 H 1.09007 * 109.47111 * 60.00019 * 13 11 10 33 33 H 0.96999 * 119.99933 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2498 1.0659 0.0000 4 6 3.5573 0.6893 0.0006 5 6 4.7650 1.3919 0.0013 6 6 5.9586 0.7041 0.0012 7 35 7.5916 1.6576 0.0015 8 6 5.9711 -0.6831 0.0048 9 6 4.7827 -1.3944 -0.0010 10 7 4.8016 -2.7944 -0.0018 11 6 5.7738 -3.4548 -0.6616 12 8 6.6771 -2.8383 -1.1864 13 6 5.7384 -4.9589 -0.7475 14 16 7.1683 -5.5431 -1.6910 15 6 6.8826 -7.2809 -1.6349 16 1 6.0179 -7.6695 -1.1177 17 6 7.7690 -8.1503 -2.2554 18 7 7.5558 -9.4485 -2.2130 19 14 9.2651 -7.4781 -3.1493 20 1 10.4063 -7.3848 -2.2037 21 1 9.6226 -8.3865 -4.2684 22 1 8.9558 -6.1287 -3.6867 23 6 3.5687 -0.7119 -0.0002 24 8 2.2743 -1.1009 0.0005 25 1 -0.3633 0.0007 1.0277 26 1 -0.3634 0.8897 -0.5144 27 1 -0.3633 -0.8903 -0.5132 28 1 4.7627 2.4720 0.0011 29 1 6.9130 -1.2115 0.0092 30 1 4.1152 -3.2890 0.4725 31 1 5.7685 -5.3810 0.2570 32 1 4.8215 -5.2729 -1.2463 33 1 8.1754 -10.0562 -2.6463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191277611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = 10.031842 kcal Electronic energy + Delta-G solvation = -21556.516770 eV Core-core repulsion = 17949.638591 eV Total energy + Delta-G solvation = -3606.878179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 369.977 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.66689 -40.31487 -38.09232 -35.67345 -34.44382 -32.51714 -32.48936 -31.29690 -30.15943 -28.60474 -28.12839 -25.69922 -23.34678 -23.15648 -21.97250 -20.72351 -18.63883 -18.32457 -17.62893 -17.28156 -16.61832 -16.31230 -15.80425 -15.38808 -15.05148 -14.35417 -14.13000 -14.04415 -13.83527 -13.69995 -13.23786 -13.20832 -12.86948 -12.63138 -12.52862 -12.28738 -11.82215 -11.35389 -11.24950 -11.08052 -11.06730 -10.73670 -10.56159 -10.06430 -9.94253 -9.77768 -9.07427 -8.88589 -8.62574 -8.32125 -7.02650 -6.35897 -4.09506 0.28280 0.61268 1.24763 1.93304 2.03232 2.45324 2.61093 3.03317 3.18880 3.28036 3.40065 3.44654 3.48834 4.19219 4.26189 4.45574 4.50065 4.71131 4.77055 4.80974 4.86480 5.03152 5.04057 5.05980 5.26230 5.49881 5.51064 5.57459 5.72723 5.82376 5.89362 5.94281 6.35562 7.11208 7.19406 7.86877 8.04173 8.34381 9.09682 10.73225 Molecular weight = 369.98amu Principal moments of inertia in cm(-1) A = 0.010171 B = 0.002930 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.340802 B = 9552.471836 C =12110.809914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.253 3.747 3 N -0.477 5.477 4 C 0.048 3.952 5 C -0.054 4.054 6 C -0.067 4.067 7 Br -0.026 7.026 8 C -0.081 4.081 9 C 0.198 3.802 10 N -0.676 5.676 11 C 0.532 3.468 12 O -0.492 6.492 13 C -0.125 4.125 14 S -0.134 6.134 15 C -0.524 4.524 16 H 0.089 0.911 17 C 0.097 3.903 18 N -0.878 5.878 19 Si 0.856 3.144 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.235 1.235 23 C -0.007 4.007 24 O -0.207 6.207 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.416 0.584 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 23.396 7.701 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.042 3.958 3 N -0.207 5.207 4 C -0.065 4.065 5 C -0.076 4.076 6 C -0.149 4.149 7 Br 0.059 6.941 8 C -0.104 4.104 9 C 0.100 3.900 10 N -0.323 5.323 11 C 0.320 3.680 12 O -0.364 6.364 13 C -0.275 4.275 14 S 0.092 5.908 15 C -0.672 4.672 16 H 0.107 0.893 17 C -0.112 4.112 18 N -0.514 5.514 19 Si 0.681 3.319 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.159 1.159 23 C -0.060 4.060 24 O -0.099 6.099 25 H 0.119 0.881 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.165 0.835 29 H 0.188 0.812 30 H 0.253 0.747 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.458 25.087 6.741 27.645 hybrid contribution -0.918 -1.954 0.419 2.199 sum -10.376 23.133 7.161 26.345 Atomic orbital electron populations 1.20467 0.80526 1.05879 1.05372 1.26553 0.96703 0.78116 0.94414 1.70660 1.00327 1.28829 1.20927 1.19430 0.92040 0.90059 1.04972 1.20091 0.87198 1.00469 0.99865 1.21343 0.92153 0.94143 1.07248 1.96765 1.25957 1.73738 1.97610 1.21205 0.98244 0.91729 0.99178 1.16318 0.88099 0.83356 1.02228 1.43643 1.31690 1.03372 1.53549 1.20628 0.80687 0.90189 0.76490 1.90720 1.33241 1.68678 1.43773 1.23286 1.06291 0.91664 1.06242 1.84835 1.29668 1.07236 1.69094 1.22282 1.15165 0.88131 1.41594 0.89251 1.24705 0.97589 0.94116 0.94803 1.69931 1.37263 1.01678 1.42558 0.86750 0.83310 0.81322 0.80566 1.19101 1.19824 1.15901 1.20098 0.83102 0.94548 1.08247 1.84499 1.14746 1.36279 1.74366 0.88108 0.87481 0.88592 0.83536 0.81201 0.74720 0.87796 0.87833 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.25 2.43 8.24 -13.09 -0.11 2.32 16 3 N -0.48 -5.64 11.34 -8.72 -0.10 -5.74 16 4 C 0.05 0.61 7.24 -84.73 -0.61 0.00 16 5 C -0.05 -0.63 9.82 -39.20 -0.38 -1.01 16 6 C -0.07 -0.82 6.21 -39.57 -0.25 -1.07 16 7 Br -0.03 -0.29 33.68 -68.01 -2.29 -2.58 16 8 C -0.08 -1.11 8.43 -39.30 -0.33 -1.44 16 9 C 0.20 2.66 6.31 -83.64 -0.53 2.13 16 10 N -0.68 -8.77 5.34 -9.83 -0.05 -8.82 16 11 C 0.53 8.83 7.69 -10.99 -0.08 8.74 16 12 O -0.49 -9.68 13.28 5.54 0.07 -9.60 16 13 C -0.12 -2.23 6.16 36.00 0.22 -2.01 16 14 S -0.13 -3.25 18.55 -107.50 -1.99 -5.24 16 15 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 16 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 17 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 18 N -0.88 -25.98 13.97 55.49 0.78 -25.20 16 19 Si 0.86 21.25 27.74 -169.99 -4.71 16.54 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 23 C -0.01 -0.09 7.35 -38.49 -0.28 -0.37 16 24 O -0.21 -2.35 10.77 3.59 0.04 -2.31 16 25 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.17 2.56 6.18 -52.49 -0.32 2.24 16 30 H 0.42 4.15 8.82 -40.82 -0.36 3.79 16 31 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 32 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -33.63 329.22 -7.86 -41.50 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -2.80 Total: 0.76 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.76 Total: -4.25 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.62 Total: -39.77 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.11 Total: -11.92 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.99 Total: -5.24 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.29 Total: -2.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.63 -7.86 -41.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191277611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.528 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds