Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86804 * 119.99655 * 2 1 4 4 H 1.48501 * 109.46898 * 269.99204 * 3 2 1 5 5 H 1.48502 * 109.47255 * 29.99557 * 3 2 1 6 6 H 1.48506 * 109.47058 * 149.99582 * 3 2 1 7 7 C 1.38792 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00179 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00072 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46907 * 180.02562 * 10 9 7 12 12 O 1.21293 * 120.00088 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99751 * 180.02562 * 11 10 9 14 14 C 1.47066 * 121.06899 * 359.97438 * 13 11 10 15 15 C 1.50729 * 109.02666 * 221.70306 * 14 13 11 16 16 O 1.21286 * 119.59486 * 151.01974 * 15 14 13 17 17 N 1.34639 * 120.80671 * 330.99094 * 15 14 13 18 18 C 1.39948 * 120.75190 * 2.42578 * 17 15 14 19 19 C 1.38572 * 120.76251 * 193.95490 * 18 17 15 20 20 C 1.38271 * 119.85748 * 180.29508 * 19 18 17 21 21 C 1.38381 * 120.36186 * 359.87522 * 20 19 18 22 22 Br 1.89097 * 119.92122 * 179.97438 * 21 20 19 23 23 C 1.38431 * 120.15948 * 0.02562 * 21 20 19 24 24 C 1.38323 * 119.72520 * 359.97438 * 23 21 20 25 25 H 0.96994 * 120.00336 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46927 * 60.00045 * 10 9 7 27 27 H 1.08997 * 109.47383 * 300.00060 * 10 9 7 28 28 H 1.09004 * 109.54073 * 341.56197 * 14 13 11 29 29 H 1.08993 * 109.54654 * 101.74079 * 14 13 11 30 30 H 0.97005 * 119.62423 * 182.44075 * 17 15 14 31 31 H 1.08004 * 120.07221 * 0.21667 * 19 18 17 32 32 H 1.08003 * 119.81436 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.13506 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8443 -6.3430 0.0033 14 6 4.2992 -6.1280 0.0048 15 6 4.9419 -7.1092 -0.9419 16 8 5.9778 -6.8132 -1.4990 17 7 4.3804 -8.3102 -1.1762 18 6 3.1601 -8.6572 -0.5854 19 6 2.7211 -9.9715 -0.5850 20 6 1.5094 -10.2924 -0.0012 21 6 0.7333 -9.3084 0.5854 22 35 -0.9221 -9.7611 1.3796 23 6 1.1652 -7.9932 0.5914 24 6 2.3765 -7.6665 0.0088 25 1 -0.4850 0.8400 -0.0004 26 1 3.1239 -3.7308 0.8925 27 1 3.1253 -3.7317 -0.8874 28 1 4.5178 -5.1109 -0.3204 29 1 4.6893 -6.2809 1.0109 30 1 4.8268 -8.9424 -1.7611 31 1 3.3234 -10.7434 -1.0409 32 1 1.1677 -11.3170 -0.0018 33 1 0.5593 -7.2256 1.0498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241515502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -24.273832 kcal Electronic energy + Delta-G solvation = -22090.061992 eV Core-core repulsion = 18481.696208 eV Total energy + Delta-G solvation = -3608.365785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 369.977 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78706 -39.53915 -38.81015 -36.11562 -35.18047 -32.51061 -31.79749 -31.49110 -29.26722 -28.93630 -27.57436 -25.58209 -23.91367 -23.05249 -21.01177 -19.50831 -18.69969 -18.11714 -17.70717 -17.16437 -16.62557 -15.71980 -15.46646 -15.14988 -14.92652 -14.87015 -14.46075 -14.17430 -14.02201 -13.80922 -13.36377 -13.04027 -12.69345 -12.43134 -12.19323 -12.07773 -11.79367 -11.13178 -11.09476 -10.98547 -10.84169 -10.48824 -10.43589 -10.15672 -9.92090 -9.69031 -9.14149 -8.78824 -8.38527 -8.06279 -6.62576 -6.29779 -4.02484 0.56213 0.89466 1.42668 1.93084 2.30189 2.54486 2.64177 3.14622 3.18648 3.25726 3.28939 3.36649 3.76192 4.10046 4.21088 4.50817 4.64049 4.70638 4.82310 4.91130 4.94936 5.06122 5.34308 5.39201 5.55661 5.61543 5.63893 5.86432 5.89315 5.95301 6.19188 6.40574 6.67986 6.87405 7.47094 7.52247 8.03266 8.27105 9.15957 10.77584 Molecular weight = 369.98amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.002998 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.430589 B = 9336.235873 C =11708.528929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.076 3.924 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.051 6.051 10 C -0.156 4.156 11 C 0.539 3.461 12 O -0.481 6.481 13 N -0.566 5.566 14 C 0.092 3.908 15 C 0.515 3.485 16 O -0.511 6.511 17 N -0.656 5.656 18 C 0.140 3.860 19 C -0.129 4.129 20 C -0.078 4.078 21 C -0.092 4.092 22 Br -0.042 7.042 23 C -0.064 4.064 24 C 0.129 3.871 25 H 0.270 0.730 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.415 0.585 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 -24.045 1.993 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.134 4.134 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.175 5.825 10 C -0.306 4.306 11 C 0.329 3.671 12 O -0.352 6.352 13 N -0.296 5.296 14 C -0.033 4.033 15 C 0.302 3.698 16 O -0.384 6.384 17 N -0.301 5.301 18 C 0.042 3.958 19 C -0.151 4.151 20 C -0.099 4.099 21 C -0.173 4.173 22 Br 0.044 6.956 23 C -0.087 4.087 24 C 0.032 3.968 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.254 0.746 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.300 -23.918 2.079 24.234 hybrid contribution 2.563 1.058 -0.492 2.816 sum 5.863 -22.860 1.586 23.654 Atomic orbital electron populations 1.70000 1.05976 1.27666 1.46498 1.24986 0.95034 0.99083 0.94304 0.86153 0.79430 0.81409 0.78445 1.20199 1.20694 1.19592 1.22844 0.94962 0.91364 1.59497 0.90706 1.85450 1.03925 0.96354 1.96767 1.23638 1.07462 0.94049 1.05478 1.20644 0.86018 0.85886 0.74600 1.90720 1.14667 1.84589 1.45242 1.45874 1.06465 1.03841 1.73419 1.22150 0.79046 1.01304 1.00835 1.20930 0.84518 0.81904 0.82458 1.90840 1.23051 1.75859 1.48668 1.43574 1.20779 1.17983 1.47803 1.17674 0.87083 0.93614 0.97452 1.20520 0.97684 0.93278 1.03658 1.20884 0.93195 0.99125 0.96699 1.21608 0.94928 0.95373 1.05375 1.96742 1.24706 1.93273 1.80903 1.21148 0.95047 0.95605 0.96853 1.17399 0.95249 0.83185 1.00977 0.92043 0.88335 0.88547 0.84486 0.86796 0.74618 0.84087 0.84259 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.22 55.49 0.73 -24.64 16 2 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -14.69 9.50 30.94 0.29 -14.40 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.05 -1.32 20.57 -107.50 -2.21 -3.53 16 10 C -0.16 -2.89 4.60 36.01 0.17 -2.72 16 11 C 0.54 9.31 7.59 -10.99 -0.08 9.23 16 12 O -0.48 -9.82 13.35 5.55 0.07 -9.74 16 13 N -0.57 -7.62 3.01 -114.10 -0.34 -7.96 16 14 C 0.09 0.98 6.38 -4.87 -0.03 0.95 16 15 C 0.52 5.80 7.90 -11.03 -0.09 5.71 16 16 O -0.51 -7.16 17.91 5.55 0.10 -7.06 16 17 N -0.66 -6.03 5.37 -9.78 -0.05 -6.09 16 18 C 0.14 1.39 6.59 -83.52 -0.55 0.84 16 19 C -0.13 -0.98 9.93 -39.45 -0.39 -1.37 16 20 C -0.08 -0.65 9.77 -39.52 -0.39 -1.04 16 21 C -0.09 -1.01 6.23 -39.46 -0.25 -1.25 16 22 Br -0.04 -0.44 33.69 -68.01 -2.29 -2.74 16 23 C -0.06 -0.85 8.56 -39.48 -0.34 -1.18 16 24 C 0.13 1.63 6.11 -83.41 -0.51 1.12 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.10 1.62 8.13 -51.92 -0.42 1.20 16 27 H 0.10 1.65 7.54 -51.92 -0.39 1.26 16 28 H 0.14 1.41 6.25 -51.93 -0.32 1.08 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.42 2.84 8.82 -40.82 -0.36 2.48 16 31 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.16 2.51 6.11 -52.49 -0.32 2.19 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -33.55 323.88 -9.03 -42.57 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.63 Total: 0.62 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.26 Total: -2.13 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.34 Total: -38.68 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.17 Total: -16.81 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.21 Total: -3.53 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.29 Total: -2.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.55 -9.03 -42.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241515502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.300 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds