Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86804 * 119.99655 * 2 1 4 4 H 1.48501 * 109.46898 * 269.99204 * 3 2 1 5 5 H 1.48502 * 109.47255 * 29.99557 * 3 2 1 6 6 H 1.48506 * 109.47058 * 149.99582 * 3 2 1 7 7 C 1.38792 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00179 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00072 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46907 * 180.02562 * 10 9 7 12 12 O 1.21293 * 120.00088 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99751 * 180.02562 * 11 10 9 14 14 C 1.47066 * 121.06899 * 359.97438 * 13 11 10 15 15 C 1.50729 * 109.02666 * 221.70306 * 14 13 11 16 16 O 1.21286 * 119.59486 * 151.01974 * 15 14 13 17 17 N 1.34639 * 120.80671 * 330.99094 * 15 14 13 18 18 C 1.39948 * 120.75190 * 2.42578 * 17 15 14 19 19 C 1.38572 * 120.76251 * 193.95490 * 18 17 15 20 20 C 1.38271 * 119.85748 * 180.29508 * 19 18 17 21 21 C 1.38381 * 120.36186 * 359.87522 * 20 19 18 22 22 Br 1.89097 * 119.92122 * 179.97438 * 21 20 19 23 23 C 1.38431 * 120.15948 * 0.02562 * 21 20 19 24 24 C 1.38323 * 119.72520 * 359.97438 * 23 21 20 25 25 H 0.96994 * 120.00336 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46927 * 60.00045 * 10 9 7 27 27 H 1.08997 * 109.47383 * 300.00060 * 10 9 7 28 28 H 1.09004 * 109.54073 * 341.56197 * 14 13 11 29 29 H 1.08993 * 109.54654 * 101.74079 * 14 13 11 30 30 H 0.97005 * 119.62423 * 182.44075 * 17 15 14 31 31 H 1.08004 * 120.07221 * 0.21667 * 19 18 17 32 32 H 1.08003 * 119.81436 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.13506 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8443 -6.3430 0.0033 14 6 4.2992 -6.1280 0.0048 15 6 4.9419 -7.1092 -0.9419 16 8 5.9778 -6.8132 -1.4990 17 7 4.3804 -8.3102 -1.1762 18 6 3.1601 -8.6572 -0.5854 19 6 2.7211 -9.9715 -0.5850 20 6 1.5094 -10.2924 -0.0012 21 6 0.7333 -9.3084 0.5854 22 35 -0.9221 -9.7611 1.3796 23 6 1.1652 -7.9932 0.5914 24 6 2.3765 -7.6665 0.0088 25 1 -0.4850 0.8400 -0.0004 26 1 3.1239 -3.7308 0.8925 27 1 3.1253 -3.7317 -0.8874 28 1 4.5178 -5.1109 -0.3204 29 1 4.6893 -6.2809 1.0109 30 1 4.8268 -8.9424 -1.7611 31 1 3.3234 -10.7434 -1.0409 32 1 1.1677 -11.3170 -0.0018 33 1 0.5593 -7.2256 1.0498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000241515502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -46.889768 kcal Electronic energy + Delta-G solvation = -22091.042693 eV Core-core repulsion = 18481.696208 eV Total energy + Delta-G solvation = -3609.346485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 369.977 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.73928 -40.64487 -39.77590 -37.12865 -36.15535 -34.59307 -32.66332 -32.46088 -30.52276 -29.79558 -28.55260 -27.66040 -24.83942 -23.87804 -22.12957 -20.47626 -19.86968 -19.44267 -18.79912 -18.44198 -17.66745 -16.88887 -16.82475 -16.35654 -16.27835 -15.95112 -15.84487 -15.24015 -15.05160 -14.78055 -14.51878 -14.47024 -14.00875 -13.70164 -13.18030 -13.09111 -12.92251 -12.90355 -12.67333 -12.62084 -11.97170 -11.76460 -11.43322 -11.28423 -11.15088 -11.08001 -10.89386 -10.31631 -9.66624 -8.95568 -8.68887 -8.35833 -6.14186 -0.27933 0.06421 0.59795 0.95269 1.18726 1.31439 1.40660 1.42734 1.53562 1.68652 1.80810 2.24858 2.46866 2.89914 2.99283 3.06363 3.41944 3.59763 3.78413 3.98677 4.04654 4.07943 4.15671 4.19334 4.38784 4.58025 4.67107 4.85716 5.11407 5.12657 5.37842 5.42195 5.59942 5.69292 5.85352 6.19253 6.66951 6.75557 7.06372 8.73170 Molecular weight = 369.98amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.002998 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.430589 B = 9336.235873 C =11708.528929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.086 0.914 9 S -0.138 6.138 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.523 6.523 13 N -0.557 5.557 14 C 0.085 3.915 15 C 0.520 3.480 16 O -0.540 6.540 17 N -0.643 5.643 18 C 0.145 3.855 19 C -0.108 4.108 20 C -0.064 4.064 21 C -0.102 4.102 22 Br -0.046 7.046 23 C -0.084 4.084 24 C 0.101 3.899 25 H 0.271 0.729 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.429 0.571 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -26.038 1.591 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.104 0.896 9 S 0.089 5.911 10 C -0.282 4.282 11 C 0.330 3.670 12 O -0.397 6.397 13 N -0.286 5.286 14 C -0.039 4.039 15 C 0.307 3.693 16 O -0.416 6.416 17 N -0.289 5.289 18 C 0.046 3.954 19 C -0.129 4.129 20 C -0.085 4.085 21 C -0.183 4.183 22 Br 0.039 6.961 23 C -0.107 4.107 24 C 0.006 3.994 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.271 0.729 31 H 0.204 0.796 32 H 0.189 0.811 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.940 -25.976 1.674 26.699 hybrid contribution 1.773 1.449 -0.361 2.318 sum 7.713 -24.527 1.313 25.744 Atomic orbital electron populations 1.70164 1.07929 1.28655 1.47925 1.26070 0.95900 1.03187 0.93687 0.84994 0.78325 0.76207 0.78733 1.19498 1.20402 1.18050 1.23206 0.95477 0.91827 1.58969 0.89631 1.85600 1.09453 0.98968 1.97068 1.23445 1.04369 0.93023 1.07361 1.20318 0.85794 0.86209 0.74661 1.90716 1.16405 1.85120 1.47508 1.45616 1.07116 1.03581 1.72260 1.22427 0.77193 1.01632 1.02633 1.20886 0.84055 0.82357 0.82005 1.90840 1.24389 1.76553 1.49782 1.43430 1.20290 1.17689 1.47478 1.17748 0.86799 0.93867 0.96977 1.21005 0.97219 0.93001 1.01680 1.21294 0.92681 0.99833 0.94709 1.21743 0.95273 0.95200 1.06061 1.96734 1.25244 1.92997 1.81105 1.20920 0.95489 0.96006 0.98278 1.17554 0.95999 0.83053 1.02844 0.91971 0.85980 0.86888 0.84128 0.83780 0.72923 0.79610 0.81139 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.22 21.65 0.29 -54.53 16 2 C 0.02 0.92 5.49 84.86 0.47 1.39 16 3 Si 1.00 42.74 29.55 68.60 2.03 44.77 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.55 -30.18 9.50 67.95 0.65 -29.53 16 8 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.14 -7.33 20.57 -56.49 -1.16 -8.49 16 10 C -0.13 -4.86 4.60 71.24 0.33 -4.54 16 11 C 0.54 19.04 7.59 87.66 0.67 19.71 16 12 O -0.52 -22.52 13.35 -3.07 -0.04 -22.56 16 13 N -0.56 -14.62 3.01 -633.29 -1.91 -16.53 16 14 C 0.09 1.65 6.38 85.53 0.55 2.19 16 15 C 0.52 10.49 7.90 87.69 0.69 11.18 16 16 O -0.54 -14.08 17.91 -3.05 -0.05 -14.13 16 17 N -0.64 -9.79 5.37 -303.31 -1.63 -11.42 16 18 C 0.14 2.44 6.59 38.25 0.25 2.69 16 19 C -0.11 -1.15 9.93 22.36 0.22 -0.93 16 20 C -0.06 -0.85 9.77 22.31 0.22 -0.63 16 21 C -0.10 -2.12 6.23 22.35 0.14 -1.98 16 22 Br -0.05 -0.97 33.69 -20.37 -0.69 -1.66 16 23 C -0.08 -2.25 8.56 22.34 0.19 -2.06 16 24 C 0.10 2.46 6.11 38.12 0.23 2.70 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.12 3.92 8.13 -2.39 -0.02 3.90 16 27 H 0.11 3.80 7.54 -2.40 -0.02 3.79 16 28 H 0.14 2.62 6.25 -2.39 -0.01 2.61 16 29 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.43 4.22 8.82 -92.70 -0.82 3.40 16 31 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 32 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.13 4.33 6.11 -2.91 -0.02 4.31 16 Total: -1.00 -76.99 323.88 1.80 -75.19 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.37 Total: 9.16 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 4.60 Total: 0.20 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.25 Total: -82.48 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.10 Total: -36.69 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -1.16 Total: -8.49 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.69 Total: -1.66 kcal Total: -76.99 1.80 -75.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241515502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.304 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds