Wall clock time and date at job start Tue Mar 31 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48528 * 111.00005 * 2 1 4 4 C 1.54941 * 103.22842 * 200.27918 * 3 2 1 5 5 C 1.54600 * 102.92074 * 37.41414 * 4 3 2 6 6 H 1.08994 * 110.39325 * 97.00276 * 5 4 3 7 7 N 1.46503 * 110.31037 * 219.13061 * 5 4 3 8 8 C 1.34777 * 119.99734 * 270.71353 * 7 5 4 9 9 O 1.21584 * 119.99772 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99673 * 179.97438 * 8 7 5 11 11 C 1.40203 * 119.99747 * 180.02562 * 10 8 7 12 12 C 1.40393 * 125.97124 * 0.02562 * 11 10 8 13 13 C 1.35250 * 107.86628 * 179.74003 * 12 11 10 14 14 N 1.34968 * 107.85661 * 0.36886 * 13 12 11 15 15 C 1.46493 * 125.97272 * 179.89474 * 14 13 12 16 16 C 1.50706 * 109.47128 * 124.71436 * 15 14 13 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72498 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46683 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47426 * 119.99743 * 20 18 16 23 23 H 1.48501 * 109.46833 * 239.99986 * 20 18 16 24 24 N 1.31207 * 125.97102 * 179.97438 * 11 10 8 25 25 C 1.47902 * 111.00168 * 242.60288 * 2 1 3 26 26 H 1.09004 * 110.07867 * 26.39584 * 25 2 1 27 27 C 1.50698 * 109.91841 * 265.19949 * 25 2 1 28 28 C 1.38234 * 119.99919 * 322.13864 * 27 25 2 29 29 C 1.38233 * 120.00065 * 179.74368 * 28 27 25 30 30 C 1.38236 * 119.99934 * 0.55047 * 29 28 27 31 31 C 1.38234 * 120.00015 * 359.69441 * 30 29 28 32 32 C 1.38233 * 119.99973 * 0.03245 * 31 30 29 33 33 H 1.08999 * 109.47154 * 177.39440 * 1 2 3 34 34 H 1.09003 * 109.47261 * 297.39839 * 1 2 3 35 35 H 1.09007 * 109.47196 * 57.39509 * 1 2 3 36 36 H 1.09002 * 110.66680 * 318.71104 * 3 2 1 37 37 H 1.08999 * 110.66891 * 81.67630 * 3 2 1 38 38 H 1.08997 * 110.72459 * 279.05804 * 4 3 2 39 39 H 1.08995 * 110.72842 * 155.76938 * 4 3 2 40 40 H 0.97001 * 120.00128 * 90.71309 * 7 5 4 41 41 H 0.97001 * 120.00189 * 0.02562 * 10 8 7 42 42 H 1.08003 * 126.06941 * 359.97014 * 12 11 10 43 43 H 1.08007 * 126.06910 * 180.25860 * 13 12 11 44 44 H 1.09001 * 109.47786 * 4.71709 * 15 14 13 45 45 H 1.08998 * 109.47558 * 244.71572 * 15 14 13 46 46 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 47 47 H 1.08003 * 119.99889 * 359.97438 * 28 27 25 48 48 H 1.08004 * 120.00061 * 180.27020 * 29 28 27 49 49 H 1.08005 * 120.00397 * 179.72589 * 30 29 28 50 50 H 1.07998 * 120.00110 * 180.02562 * 31 30 29 51 51 H 1.07995 * 120.00113 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5931 6 1 3.2143 0.5470 -2.5860 7 7 4.4390 -0.8125 -1.5406 8 6 5.5410 -0.5605 -2.2744 9 8 5.5886 0.4289 -2.9796 10 7 6.5905 -1.4045 -2.2257 11 6 7.7371 -1.1420 -2.9886 12 6 7.9265 -0.0429 -3.8414 13 6 9.1595 -0.1486 -4.3870 14 7 9.7291 -1.2744 -3.9076 15 6 11.0658 -1.7720 -4.2418 16 6 11.8590 -1.9704 -2.9758 17 1 11.4121 -1.7476 -2.0182 18 6 13.1533 -2.4412 -3.0398 19 7 13.6955 -2.7177 -4.2056 20 14 14.1362 -2.6878 -1.4706 21 1 13.3045 -2.3072 -0.3007 22 1 14.5326 -4.1140 -1.3536 23 1 15.3530 -1.8374 -1.5100 24 7 8.8211 -1.8802 -3.0298 25 6 1.9991 -0.6354 -1.2259 26 1 1.2771 -0.5433 -2.0373 27 6 2.2938 -2.0899 -0.9640 28 6 2.8191 -2.4803 0.2535 29 6 3.0845 -3.8151 0.4957 30 6 2.8352 -4.7582 -0.4838 31 6 2.3145 -4.3671 -1.7032 32 6 2.0439 -3.0330 -1.9433 33 1 -0.3633 -1.0266 -0.0467 34 1 -0.3634 0.4729 0.9124 35 1 -0.3634 0.5538 -0.8658 36 1 1.4237 2.0204 -0.6730 37 1 2.0013 1.7987 1.0091 38 1 4.1115 0.8835 0.2787 39 1 3.8123 2.1351 -0.9716 40 1 4.4011 -1.6016 -0.9777 41 1 6.5527 -2.1936 -1.6628 42 1 7.2154 0.7488 -4.0258 43 1 9.6079 0.5438 -5.0842 44 1 11.5741 -1.0486 -4.8793 45 1 10.9786 -2.7223 -4.7685 46 1 14.6060 -3.0492 -4.2507 47 1 3.0188 -1.7429 1.0169 48 1 3.4909 -4.1207 1.4485 49 1 3.0466 -5.8006 -0.2963 50 1 2.1193 -5.1039 -2.4683 51 1 1.6375 -2.7274 -2.8961 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249027062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:33 Heat of formation + Delta-G solvation = 84.104113 kcal Electronic energy + Delta-G solvation = -33119.549439 eV Core-core repulsion = 28827.501635 eV Total energy + Delta-G solvation = -4292.047803 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 369.191 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.28242 -41.61631 -40.33578 -39.00767 -36.26868 -35.57518 -35.22909 -32.88531 -32.82599 -31.80947 -31.57982 -30.89324 -28.77419 -28.30763 -26.32966 -25.04672 -23.76641 -23.39741 -23.19846 -22.18823 -21.76697 -21.27425 -20.82659 -19.33973 -18.68932 -18.30891 -17.89225 -17.14118 -16.89923 -16.66040 -16.59707 -16.16597 -16.00253 -15.70170 -15.59402 -15.51013 -15.28610 -14.77234 -14.47718 -14.27500 -14.18933 -14.06806 -13.79424 -13.72686 -13.61828 -13.46005 -13.20194 -12.94410 -12.74327 -12.72904 -12.70063 -12.30114 -12.19058 -12.08987 -12.01528 -11.84376 -11.66319 -11.62144 -11.37288 -11.11214 -10.71608 -10.21595 -9.78673 -9.71407 -9.60165 -9.46979 -9.04445 -8.32068 -6.46060 0.42783 0.52434 1.08185 1.14997 1.37541 1.38903 1.52218 1.71111 2.12511 2.36667 2.41125 2.80352 2.98466 2.99297 3.12779 3.53089 3.64758 3.92105 3.98571 4.05144 4.13149 4.21471 4.28848 4.29888 4.33444 4.37392 4.53046 4.54607 4.66355 4.72494 4.76978 4.79159 4.87723 4.92059 4.96479 4.99919 5.03522 5.06362 5.08612 5.13501 5.17994 5.22478 5.51028 5.57616 5.59630 5.63522 5.68725 5.75036 5.85846 5.89760 5.98100 6.05377 6.13890 6.30949 6.64558 6.74089 7.14213 7.23824 7.41960 8.75524 Molecular weight = 369.19amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.002079 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.063265 B =13463.281581 C =14349.717963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.517 5.517 3 C 0.041 3.959 4 C -0.134 4.134 5 C 0.161 3.839 6 H 0.091 0.909 7 N -0.714 5.714 8 C 0.713 3.287 9 O -0.597 6.597 10 N -0.639 5.639 11 C 0.285 3.715 12 C -0.291 4.291 13 C 0.056 3.944 14 N -0.345 5.345 15 C 0.273 3.727 16 C -0.545 4.545 17 H 0.051 0.949 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.270 1.270 24 N -0.348 5.348 25 C 0.105 3.895 26 H 0.080 0.920 27 C -0.079 4.079 28 C -0.106 4.106 29 C -0.129 4.129 30 C -0.127 4.127 31 C -0.128 4.128 32 C -0.122 4.122 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.406 0.594 41 H 0.416 0.584 42 H 0.168 0.832 43 H 0.201 0.799 44 H 0.059 0.941 45 H 0.021 0.979 46 H 0.272 0.728 47 H 0.132 0.868 48 H 0.136 0.864 49 H 0.134 0.866 50 H 0.132 0.868 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.162 3.419 9.018 31.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.241 5.241 3 C -0.086 4.086 4 C -0.173 4.173 5 C 0.055 3.945 6 H 0.109 0.891 7 N -0.373 5.373 8 C 0.413 3.587 9 O -0.475 6.475 10 N -0.290 5.290 11 C 0.030 3.970 12 C -0.322 4.322 13 C -0.092 4.092 14 N -0.127 5.127 15 C 0.154 3.846 16 C -0.583 4.583 17 H 0.069 0.931 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.796 3.204 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.179 5.179 25 C -0.004 4.004 26 H 0.098 0.902 27 C -0.080 4.080 28 C -0.124 4.124 29 C -0.147 4.147 30 C -0.145 4.145 31 C -0.146 4.146 32 C -0.141 4.141 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.247 0.753 41 H 0.253 0.747 42 H 0.185 0.815 43 H 0.218 0.782 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.081 0.919 47 H 0.150 0.850 48 H 0.154 0.846 49 H 0.152 0.848 50 H 0.150 0.850 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -29.173 2.877 9.172 30.716 hybrid contribution 0.131 -0.024 -0.082 0.156 sum -29.042 2.852 9.090 30.565 Atomic orbital electron populations 1.22543 0.86289 1.02315 1.01935 1.64639 1.09387 1.15202 1.34908 1.23245 0.93507 0.89376 1.02480 1.22947 0.97786 0.98521 0.98056 1.21701 0.83421 0.88933 1.00447 0.89118 1.45339 1.14015 1.29722 1.48251 1.15782 0.80049 0.82146 0.80773 1.90817 1.81776 1.29612 1.45292 1.41410 1.12204 1.28369 1.46975 1.19068 0.87523 0.95164 0.95255 1.21676 0.99257 1.03923 1.07386 1.23162 0.94200 0.91216 1.00646 1.48815 1.13729 1.18042 1.32100 1.19335 0.73415 0.95280 0.96590 1.21423 0.98337 1.45734 0.92830 0.93050 1.25744 0.98182 0.94225 1.00142 1.70003 1.15792 1.44662 1.25489 0.85294 0.78162 0.78254 0.78669 1.19958 1.19834 1.19479 1.77246 1.00093 1.23524 1.17086 1.21491 0.95001 0.91111 0.92817 0.90207 1.19592 0.99773 0.93932 0.94717 1.21139 0.98317 0.96210 0.96773 1.21466 1.00027 0.93104 1.00064 1.21459 0.98791 1.00559 0.93719 1.21359 0.99259 0.96161 0.97798 1.21194 1.00587 0.93204 0.99109 0.91552 0.89993 0.94436 0.92165 0.88360 0.90746 0.90480 0.75306 0.74739 0.81508 0.78180 0.92311 0.96095 0.91859 0.85036 0.84613 0.84792 0.84968 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 127.69 1.20 1.36 16 2 N -0.52 -6.32 4.37 -888.43 -3.88 -10.20 16 3 C 0.04 0.47 6.56 86.65 0.57 1.03 16 4 C -0.13 -2.14 6.78 31.80 0.22 -1.93 16 5 C 0.16 2.90 3.31 45.87 0.15 3.05 16 6 H 0.09 1.88 7.56 -2.39 -0.02 1.86 16 7 N -0.71 -15.41 4.64 -453.61 -2.11 -17.52 16 8 C 0.71 21.47 8.53 179.06 1.53 23.00 16 9 O -0.60 -21.38 13.12 -3.98 -0.05 -21.43 16 10 N -0.64 -20.83 5.46 -321.24 -1.75 -22.58 16 11 C 0.29 11.85 8.11 133.31 1.08 12.93 16 12 C -0.29 -11.78 9.61 22.11 0.21 -11.56 16 13 C 0.06 2.28 11.44 83.52 0.96 3.23 16 14 N -0.34 -16.56 3.67 -351.83 -1.29 -17.85 16 15 C 0.27 14.36 6.26 85.64 0.54 14.89 16 16 C -0.55 -31.14 9.24 25.60 0.24 -30.90 16 17 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 18 C 0.02 0.96 5.46 84.65 0.46 1.43 16 19 N -0.92 -52.53 13.29 21.45 0.28 -52.25 16 20 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 N -0.35 -16.67 12.42 -54.44 -0.68 -17.34 16 25 C 0.11 1.48 2.66 44.31 0.12 1.60 16 26 H 0.08 1.02 7.64 -2.39 -0.02 1.00 16 27 C -0.08 -1.21 3.61 -19.87 -0.07 -1.29 16 28 C -0.11 -1.61 7.54 22.27 0.17 -1.45 16 29 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 30 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 31 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 32 C -0.12 -1.91 9.68 22.27 0.22 -1.69 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.04 0.30 8.01 -2.38 -0.02 0.28 16 36 H 0.06 0.58 7.96 -2.39 -0.02 0.56 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.32 8.06 -2.39 -0.02 1.30 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.41 7.82 5.28 -92.71 -0.49 7.33 16 41 H 0.42 11.54 8.84 -92.71 -0.82 10.72 16 42 H 0.17 6.56 5.91 -2.91 -0.02 6.54 16 43 H 0.20 6.40 8.06 -2.91 -0.02 6.37 16 44 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 45 H 0.02 1.18 8.14 -2.39 -0.02 1.17 16 46 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.13 1.99 7.67 -2.91 -0.02 1.97 16 48 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 49 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 50 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 51 H 0.13 1.72 8.05 -2.91 -0.02 1.70 16 Total: -1.00 -70.15 418.25 0.45 -69.70 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.35 Total: 34.72 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 8.25 Total: 8.71 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -9.42 Total: -137.74 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -70.15 0.45 -69.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249027062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.803 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds