Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46895 * 111.00397 * 2 1 4 4 C 1.46900 * 110.99946 * 123.95500 * 2 1 3 5 5 H 1.09001 * 109.47183 * 303.65112 * 4 2 1 6 6 C 1.53003 * 109.47337 * 183.65304 * 4 2 1 7 7 N 1.46499 * 109.47172 * 174.63545 * 6 4 2 8 8 S 1.65603 * 119.99869 * 151.05154 * 7 6 4 9 9 O 1.42103 * 104.27610 * 308.92563 * 8 7 6 10 10 O 1.42095 * 104.27561 * 181.06935 * 8 7 6 11 11 C 1.81397 * 104.45007 * 64.99333 * 8 7 6 12 12 C 1.53002 * 109.46849 * 185.98720 * 11 8 7 13 13 C 1.50695 * 115.55273 * 306.18784 * 12 11 8 14 14 H 1.08001 * 119.99942 * 95.97755 * 13 12 11 15 15 C 1.37881 * 120.00082 * 275.97456 * 13 12 11 16 16 N 1.31509 * 120.00054 * 6.49806 * 15 13 12 17 17 Si 1.86805 * 119.99876 * 186.49528 * 15 13 12 18 18 H 1.48501 * 109.46987 * 270.00307 * 17 15 13 19 19 H 1.48502 * 109.47039 * 29.99945 * 17 15 13 20 20 H 1.48498 * 109.46814 * 150.00003 * 17 15 13 21 21 C 1.53006 * 117.49559 * 91.86225 * 12 11 8 22 22 C 1.53008 * 117.49496 * 160.51877 * 12 11 8 23 23 C 1.50698 * 109.47356 * 63.64938 * 4 2 1 24 24 C 1.38265 * 119.98763 * 220.00148 * 23 4 2 25 25 C 1.38225 * 120.05421 * 180.02562 * 24 23 4 26 26 C 1.38222 * 120.02212 * 0.02562 * 25 24 23 27 27 C 1.38444 * 119.97712 * 359.97438 * 26 25 24 28 28 F 1.35093 * 120.02605 * 180.02562 * 27 26 25 29 29 C 1.38171 * 119.98648 * 39.72688 * 23 4 2 30 30 H 1.09002 * 109.47305 * 300.00408 * 1 2 3 31 31 H 1.08998 * 109.47034 * 60.00034 * 1 2 3 32 32 H 1.09002 * 109.47735 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47355 * 187.85962 * 3 2 1 34 34 H 1.09003 * 109.47029 * 307.85361 * 3 2 1 35 35 H 1.09001 * 109.47496 * 67.85426 * 3 2 1 36 36 H 1.08998 * 109.47037 * 54.62636 * 6 4 2 37 37 H 1.09006 * 109.46471 * 294.63215 * 6 4 2 38 38 H 0.97001 * 119.99903 * 331.04628 * 7 6 4 39 39 H 1.09007 * 109.47092 * 65.99526 * 11 8 7 40 40 H 1.08989 * 109.47684 * 305.99329 * 11 8 7 41 41 H 0.97006 * 119.99921 * 355.26278 * 16 15 13 42 42 H 1.08993 * 117.49588 * 215.00286 * 21 12 11 43 43 H 1.08996 * 117.49669 * 0.02562 * 21 12 11 44 44 H 1.08996 * 117.49982 * 359.97438 * 22 12 11 45 45 H 1.08997 * 117.49911 * 144.97762 * 22 12 11 46 46 H 1.08005 * 119.97727 * 359.97438 * 24 23 4 47 47 H 1.07998 * 119.99176 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.01370 * 180.02562 * 26 25 24 49 49 H 1.08003 * 120.01653 * 0.02562 * 29 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5939 -0.3599 2.0660 6 6 3.5221 -0.6676 1.1560 7 7 4.0392 -1.3228 2.3599 8 16 5.5460 -2.0097 2.3464 9 8 5.5405 -2.8440 1.1961 10 8 5.6925 -2.5586 3.6489 11 6 6.6786 -0.6120 2.1135 12 6 8.1049 -1.1359 1.9342 13 6 8.6000 -2.0574 3.0189 14 1 8.5348 -3.1276 2.8896 15 6 9.1364 -1.5342 4.1764 16 7 9.0999 -0.2371 4.3903 17 14 9.9147 -2.6679 5.4407 18 1 8.8821 -3.1082 6.4129 19 1 10.4874 -3.8544 4.7556 20 1 10.9933 -1.9422 6.1586 21 6 8.5850 -1.4033 0.5063 22 6 9.1247 -0.1995 1.2827 23 6 1.5867 -2.2102 1.0030 24 6 1.1919 -2.9237 2.1196 25 6 0.8172 -4.2486 1.9978 26 6 0.8374 -4.8619 0.7593 27 6 1.2325 -4.1486 -0.3596 28 9 1.2520 -4.7469 -1.5706 29 6 1.6011 -2.8193 -0.2372 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.0760 1.3457 -0.1405 34 1 1.5369 1.9366 -0.8114 35 1 1.7641 1.8495 0.9518 36 1 3.8186 0.3813 1.1572 37 1 3.9285 -1.1590 0.2719 38 1 3.4990 -1.3542 3.1650 39 1 6.6376 0.0384 2.9873 40 1 6.3841 -0.0494 1.2277 41 1 8.7584 0.3581 3.7047 42 1 9.2588 -2.2459 0.3515 43 1 7.8848 -1.2057 -0.3053 44 1 8.7793 0.7894 0.9815 45 1 10.1536 -0.2498 1.6389 46 1 1.1770 -2.4457 3.0880 47 1 0.5087 -4.8048 2.8706 48 1 0.5442 -5.8970 0.6642 49 1 1.9057 -2.2607 -1.1099 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253432021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -60.199594 kcal Electronic energy + Delta-G solvation = -32929.467102 eV Core-core repulsion = 28513.134053 eV Total energy + Delta-G solvation = -4416.333049 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.151 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.89750 -40.00779 -37.62985 -37.07974 -36.25943 -35.14172 -34.79033 -31.99772 -31.72136 -30.59569 -28.64051 -28.33229 -27.45354 -24.98922 -24.26905 -23.28708 -22.44207 -21.41633 -20.59986 -19.92306 -18.80366 -17.66816 -17.04000 -16.85778 -16.71744 -16.28694 -16.01289 -15.75800 -15.52608 -15.17629 -15.11471 -14.83794 -14.14883 -14.01867 -13.99576 -13.93845 -13.73183 -13.27792 -13.17829 -12.83636 -12.63197 -12.58326 -12.43483 -12.15926 -12.03374 -11.88495 -11.74002 -11.71997 -11.27104 -11.23603 -11.16036 -11.07445 -11.00688 -10.76380 -10.61682 -10.35585 -10.09869 -9.74645 -9.35105 -8.98566 -8.76416 -8.73582 -8.67606 -8.49635 -8.34121 -6.47575 -4.27395 0.99787 1.04437 1.14654 3.24143 3.46195 3.46895 3.50257 3.64494 3.71068 4.10676 4.38195 4.48486 4.51913 4.65417 4.70053 4.81956 4.85771 4.93081 4.98892 5.02850 5.04750 5.09279 5.18366 5.22856 5.29933 5.33332 5.35934 5.49389 5.56291 5.61836 5.66260 5.72904 5.75114 5.93678 5.95970 6.04819 6.06473 6.16058 6.17312 6.28014 6.33065 6.52113 6.65268 6.68384 6.72870 6.81386 6.98434 7.16139 7.16895 8.01400 8.31895 8.75496 9.52899 10.92439 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003106 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.493639 B = 9012.726475 C = 9781.785625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.538 5.538 3 C 0.015 3.985 4 C 0.118 3.882 5 H 0.062 0.938 6 C 0.122 3.878 7 N -1.131 6.131 8 S 2.621 3.379 9 O -0.966 6.966 10 O -0.942 6.942 11 C -0.569 4.569 12 C 0.023 3.977 13 C -0.598 4.598 14 H 0.062 0.938 15 C 0.044 3.956 16 N -0.896 5.896 17 Si 1.065 2.935 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.283 1.283 21 C -0.188 4.188 22 C -0.165 4.165 23 C -0.047 4.047 24 C -0.125 4.125 25 C -0.092 4.092 26 C -0.155 4.155 27 C 0.095 3.905 28 F -0.141 7.141 29 C -0.122 4.122 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.410 0.590 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.274 0.726 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.127 0.873 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.577 2.166 -7.269 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.262 5.262 3 C -0.132 4.132 4 C 0.008 3.992 5 H 0.080 0.920 6 C -0.005 4.005 7 N -0.888 5.888 8 S 2.717 3.283 9 O -0.956 6.956 10 O -0.932 6.932 11 C -0.702 4.702 12 C 0.021 3.979 13 C -0.635 4.635 14 H 0.080 0.920 15 C -0.163 4.163 16 N -0.529 5.529 17 Si 0.892 3.108 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.226 4.226 22 C -0.205 4.205 23 C -0.048 4.048 24 C -0.143 4.143 25 C -0.110 4.110 26 C -0.174 4.174 27 C 0.076 3.924 28 F -0.120 7.120 29 C -0.141 4.141 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.243 0.757 39 H 0.142 0.858 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.144 0.856 47 H 0.150 0.850 48 H 0.151 0.849 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.454 0.987 -6.328 19.533 hybrid contribution -1.131 1.157 -0.781 1.797 sum -19.585 2.144 -7.108 20.945 Atomic orbital electron populations 1.22422 0.86680 1.02580 1.00773 1.61930 1.08384 1.13980 1.41915 1.22540 1.01649 0.88205 1.00850 1.20790 0.94931 0.90493 0.92966 0.92016 1.21331 0.92703 0.97854 0.88632 1.56023 1.36370 1.76677 1.19701 1.04748 0.72761 0.76353 0.74473 1.93509 1.85725 1.63593 1.52766 1.93562 1.84454 1.75706 1.39456 1.30119 1.13144 1.18150 1.08739 1.18528 0.87375 0.99288 0.92744 1.21430 1.46438 0.93040 1.02551 0.91983 1.25801 0.93950 0.98343 0.98249 1.70742 1.43147 1.03346 1.35698 0.83614 0.76729 0.74750 0.75700 1.20676 1.21065 1.20901 1.23021 1.04281 1.00308 0.94951 1.22791 1.00023 0.92739 1.04900 1.19408 0.97724 0.94925 0.92706 1.21075 1.00133 0.94815 0.98301 1.20942 0.98626 0.94616 0.96809 1.21154 1.03317 1.00825 0.92122 1.17723 1.02269 0.91800 0.80575 1.91492 1.94302 1.83703 1.42471 1.21002 1.01002 0.92814 0.99299 0.95455 0.91025 0.91029 0.90443 0.90926 0.95086 0.91239 0.88955 0.75719 0.85758 0.88355 0.91425 0.89298 0.90774 0.91243 0.89312 0.85553 0.84956 0.84927 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.30 60.06 0.56 0.74 16 2 N -0.54 -4.84 4.15 -244.59 -1.02 -5.85 16 3 C 0.02 0.12 8.89 60.06 0.53 0.65 16 4 C 0.12 1.20 1.84 -68.86 -0.13 1.07 16 5 H 0.06 0.56 8.00 -51.93 -0.42 0.14 16 6 C 0.12 1.47 5.28 -4.04 -0.02 1.45 16 7 N -1.13 -16.25 5.53 -10.61 -0.06 -16.31 16 8 S 2.62 53.21 4.97 -107.50 -0.53 52.67 16 9 O -0.97 -21.72 17.39 -57.54 -1.00 -22.72 16 10 O -0.94 -22.81 17.39 -57.54 -1.00 -23.81 16 11 C -0.57 -11.60 5.96 37.16 0.22 -11.38 16 12 C 0.02 0.55 1.03 -155.65 -0.16 0.39 16 13 C -0.60 -16.54 7.51 -34.44 -0.26 -16.80 16 14 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 15 C 0.04 1.24 5.39 -17.82 -0.10 1.14 16 16 N -0.90 -25.63 13.58 55.43 0.75 -24.88 16 17 Si 1.06 25.49 29.91 -169.99 -5.08 20.41 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.19 -4.08 9.92 -26.69 -0.26 -4.34 16 22 C -0.17 -3.65 8.78 -26.69 -0.23 -3.89 16 23 C -0.05 -0.54 3.51 -104.64 -0.37 -0.91 16 24 C -0.12 -1.34 9.67 -39.58 -0.38 -1.72 16 25 C -0.09 -0.96 10.04 -39.59 -0.40 -1.35 16 26 C -0.16 -1.76 10.03 -39.51 -0.40 -2.15 16 27 C 0.10 1.23 7.30 -39.41 -0.29 0.95 16 28 F -0.14 -1.92 17.27 2.25 0.04 -1.88 16 29 C -0.12 -1.53 8.69 -39.51 -0.34 -1.88 16 30 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.59 6.68 -51.93 -0.35 0.25 16 33 H 0.08 0.59 6.33 -51.93 -0.33 0.26 16 34 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.69 6.08 -51.93 -0.32 0.37 16 37 H 0.09 1.24 7.51 -51.93 -0.39 0.85 16 38 H 0.41 5.05 8.74 -34.48 -0.30 4.75 16 39 H 0.12 2.57 7.69 -51.92 -0.40 2.17 16 40 H 0.10 1.63 8.08 -51.93 -0.42 1.21 16 41 H 0.27 7.61 6.09 -40.82 -0.25 7.37 16 42 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 46 H 0.13 1.10 8.04 -52.48 -0.42 0.68 16 47 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 49 H 0.14 1.76 7.71 -52.48 -0.40 1.35 16 LS Contribution 414.63 15.07 6.25 6.25 Total: -1.00 -34.62 414.63 -11.10 -45.72 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.42 Total: 8.42 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: -2.02 Total: -38.03 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.32 Total: -47.04 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.00 Total: -46.52 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Atomic # 16 Polarization: 53.21 SS G_CDS: -0.53 Total: 52.67 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.62 -11.10 -45.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253432021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.478 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds