Wall clock time and date at job start Tue Mar 31 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46895 * 111.00397 * 2 1 4 4 C 1.46900 * 110.99946 * 123.95500 * 2 1 3 5 5 H 1.09001 * 109.47183 * 303.65112 * 4 2 1 6 6 C 1.53003 * 109.47337 * 183.65304 * 4 2 1 7 7 N 1.46499 * 109.47172 * 174.63545 * 6 4 2 8 8 S 1.65603 * 119.99869 * 151.05154 * 7 6 4 9 9 O 1.42103 * 104.27610 * 308.92563 * 8 7 6 10 10 O 1.42095 * 104.27561 * 181.06935 * 8 7 6 11 11 C 1.81397 * 104.45007 * 64.99333 * 8 7 6 12 12 C 1.53002 * 109.46849 * 185.98720 * 11 8 7 13 13 C 1.50695 * 115.55273 * 306.18784 * 12 11 8 14 14 H 1.08001 * 119.99942 * 95.97755 * 13 12 11 15 15 C 1.37881 * 120.00082 * 275.97456 * 13 12 11 16 16 N 1.31509 * 120.00054 * 6.49806 * 15 13 12 17 17 Si 1.86805 * 119.99876 * 186.49528 * 15 13 12 18 18 H 1.48501 * 109.46987 * 270.00307 * 17 15 13 19 19 H 1.48502 * 109.47039 * 29.99945 * 17 15 13 20 20 H 1.48498 * 109.46814 * 150.00003 * 17 15 13 21 21 C 1.53006 * 117.49559 * 91.86225 * 12 11 8 22 22 C 1.53008 * 117.49496 * 160.51877 * 12 11 8 23 23 C 1.50698 * 109.47356 * 63.64938 * 4 2 1 24 24 C 1.38265 * 119.98763 * 220.00148 * 23 4 2 25 25 C 1.38225 * 120.05421 * 180.02562 * 24 23 4 26 26 C 1.38222 * 120.02212 * 0.02562 * 25 24 23 27 27 C 1.38444 * 119.97712 * 359.97438 * 26 25 24 28 28 F 1.35093 * 120.02605 * 180.02562 * 27 26 25 29 29 C 1.38171 * 119.98648 * 39.72688 * 23 4 2 30 30 H 1.09002 * 109.47305 * 300.00408 * 1 2 3 31 31 H 1.08998 * 109.47034 * 60.00034 * 1 2 3 32 32 H 1.09002 * 109.47735 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47355 * 187.85962 * 3 2 1 34 34 H 1.09003 * 109.47029 * 307.85361 * 3 2 1 35 35 H 1.09001 * 109.47496 * 67.85426 * 3 2 1 36 36 H 1.08998 * 109.47037 * 54.62636 * 6 4 2 37 37 H 1.09006 * 109.46471 * 294.63215 * 6 4 2 38 38 H 0.97001 * 119.99903 * 331.04628 * 7 6 4 39 39 H 1.09007 * 109.47092 * 65.99526 * 11 8 7 40 40 H 1.08989 * 109.47684 * 305.99329 * 11 8 7 41 41 H 0.97006 * 119.99921 * 355.26278 * 16 15 13 42 42 H 1.08993 * 117.49588 * 215.00286 * 21 12 11 43 43 H 1.08996 * 117.49669 * 0.02562 * 21 12 11 44 44 H 1.08996 * 117.49982 * 359.97438 * 22 12 11 45 45 H 1.08997 * 117.49911 * 144.97762 * 22 12 11 46 46 H 1.08005 * 119.97727 * 359.97438 * 24 23 4 47 47 H 1.07998 * 119.99176 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.01370 * 180.02562 * 26 25 24 49 49 H 1.08003 * 120.01653 * 0.02562 * 29 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5939 -0.3599 2.0660 6 6 3.5221 -0.6676 1.1560 7 7 4.0392 -1.3228 2.3599 8 16 5.5460 -2.0097 2.3464 9 8 5.5405 -2.8440 1.1961 10 8 5.6925 -2.5586 3.6489 11 6 6.6786 -0.6120 2.1135 12 6 8.1049 -1.1359 1.9342 13 6 8.6000 -2.0574 3.0189 14 1 8.5348 -3.1276 2.8896 15 6 9.1364 -1.5342 4.1764 16 7 9.0999 -0.2371 4.3903 17 14 9.9147 -2.6679 5.4407 18 1 8.8821 -3.1082 6.4129 19 1 10.4874 -3.8544 4.7556 20 1 10.9933 -1.9422 6.1586 21 6 8.5850 -1.4033 0.5063 22 6 9.1247 -0.1995 1.2827 23 6 1.5867 -2.2102 1.0030 24 6 1.1919 -2.9237 2.1196 25 6 0.8172 -4.2486 1.9978 26 6 0.8374 -4.8619 0.7593 27 6 1.2325 -4.1486 -0.3596 28 9 1.2520 -4.7469 -1.5706 29 6 1.6011 -2.8193 -0.2372 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.0760 1.3457 -0.1405 34 1 1.5369 1.9366 -0.8114 35 1 1.7641 1.8495 0.9518 36 1 3.8186 0.3813 1.1572 37 1 3.9285 -1.1590 0.2719 38 1 3.4990 -1.3542 3.1650 39 1 6.6376 0.0384 2.9873 40 1 6.3841 -0.0494 1.2277 41 1 8.7584 0.3581 3.7047 42 1 9.2588 -2.2459 0.3515 43 1 7.8848 -1.2057 -0.3053 44 1 8.7793 0.7894 0.9815 45 1 10.1536 -0.2498 1.6389 46 1 1.1770 -2.4457 3.0880 47 1 0.5087 -4.8048 2.8706 48 1 0.5442 -5.8970 0.6642 49 1 1.9057 -2.2607 -1.1099 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253432021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:36 Heat of formation + Delta-G solvation = -83.716961 kcal Electronic energy + Delta-G solvation = -32930.486892 eV Core-core repulsion = 28513.134053 eV Total energy + Delta-G solvation = -4417.352838 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 370.151 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.89004 -40.82171 -38.88390 -38.42396 -37.95110 -36.82468 -35.85726 -34.05365 -32.57448 -31.46426 -29.98346 -29.45447 -28.12124 -27.05772 -25.12923 -24.08396 -23.28364 -23.14920 -21.85407 -21.33015 -20.33854 -18.83228 -18.66091 -18.31523 -17.73590 -17.21273 -17.12672 -16.96602 -16.63416 -16.32333 -16.09412 -15.85894 -15.74439 -15.63296 -15.21731 -14.92413 -14.78475 -14.74542 -14.57259 -14.16003 -13.70767 -13.63390 -13.33488 -13.15347 -13.12542 -13.08488 -12.97885 -12.93851 -12.78255 -12.68591 -12.59262 -12.44287 -12.32834 -12.23518 -12.08120 -11.94764 -11.85366 -11.49112 -10.60715 -10.56118 -10.53033 -10.12548 -9.85233 -9.65321 -9.35900 -8.62642 -6.41510 -0.57506 0.16623 0.27646 1.51935 1.59077 1.76258 1.96496 2.53476 2.58518 2.90087 2.96385 3.12836 3.15546 3.23730 3.42067 3.58273 3.73354 3.86587 3.89749 4.07620 4.13208 4.16536 4.24513 4.31317 4.37652 4.38121 4.45034 4.48887 4.50819 4.57488 4.62494 4.71179 4.77741 4.82358 4.85704 4.94282 5.00515 5.06001 5.10266 5.12542 5.18676 5.22638 5.34044 5.42275 5.45497 5.93245 5.97849 6.00469 6.05504 6.11132 6.14952 6.64771 7.41738 8.79626 Molecular weight = 370.15amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003106 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.493639 B = 9012.726475 C = 9781.785625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.012 3.988 4 C 0.124 3.876 5 H 0.080 0.920 6 C 0.113 3.887 7 N -1.113 6.113 8 S 2.634 3.366 9 O -0.994 6.994 10 O -0.990 6.990 11 C -0.564 4.564 12 C -0.014 4.014 13 C -0.610 4.610 14 H 0.037 0.963 15 C 0.004 3.996 16 N -0.915 5.915 17 Si 1.091 2.909 18 H -0.279 1.279 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.180 4.180 22 C -0.156 4.156 23 C -0.055 4.055 24 C -0.132 4.132 25 C -0.095 4.095 26 C -0.163 4.163 27 C 0.069 3.931 28 F -0.152 7.152 29 C -0.134 4.134 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.422 0.578 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.273 0.727 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.149 0.851 47 H 0.159 0.841 48 H 0.148 0.852 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.912 3.628 -7.277 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.136 4.136 4 C 0.014 3.986 5 H 0.098 0.902 6 C -0.013 4.013 7 N -0.874 5.874 8 S 2.730 3.270 9 O -0.984 6.984 10 O -0.980 6.980 11 C -0.696 4.696 12 C -0.016 4.016 13 C -0.647 4.647 14 H 0.055 0.945 15 C -0.199 4.199 16 N -0.549 5.549 17 Si 0.914 3.086 18 H -0.205 1.205 19 H -0.200 1.200 20 H -0.197 1.197 21 C -0.217 4.217 22 C -0.195 4.195 23 C -0.055 4.055 24 C -0.151 4.151 25 C -0.113 4.113 26 C -0.181 4.181 27 C 0.050 3.950 28 F -0.131 7.131 29 C -0.153 4.153 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.258 0.742 39 H 0.139 0.861 40 H 0.158 0.842 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.086 0.914 46 H 0.166 0.834 47 H 0.177 0.823 48 H 0.166 0.834 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.795 2.446 -6.345 20.930 hybrid contribution -0.786 0.714 -0.858 1.365 sum -20.581 3.160 -7.203 22.033 Atomic orbital electron populations 1.22416 0.85859 1.02201 1.01709 1.61913 1.09163 1.14802 1.41371 1.22619 1.01669 0.87477 1.01806 1.20714 0.93501 0.90046 0.94338 0.90239 1.21610 0.94080 0.98853 0.86739 1.55415 1.34334 1.76470 1.21220 1.04005 0.73728 0.76361 0.72911 1.93473 1.86528 1.64986 1.53382 1.93493 1.85708 1.77269 1.41508 1.29979 1.10876 1.18206 1.10588 1.18646 0.89569 1.00385 0.93006 1.21603 1.46566 0.92588 1.03964 0.94472 1.26765 0.94258 0.99001 0.99914 1.70810 1.44532 1.03637 1.35958 0.83295 0.76636 0.74154 0.74561 1.20466 1.19954 1.19695 1.23096 1.04192 0.99815 0.94568 1.22756 0.98490 0.94157 1.04132 1.19637 0.97630 0.95810 0.92461 1.21456 0.99418 0.95107 0.99073 1.21330 0.97815 0.94836 0.97299 1.21437 1.02979 1.01665 0.92059 1.18050 1.03770 0.92449 0.80777 1.91454 1.94557 1.83906 1.43162 1.21073 1.01588 0.92828 0.99850 0.94546 0.90013 0.92078 0.90506 0.89805 0.94257 0.88389 0.90395 0.74217 0.86126 0.84173 0.91664 0.90245 0.87834 0.88293 0.91432 0.83353 0.82322 0.83386 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.30 127.69 1.19 1.53 16 2 N -0.55 -8.57 4.15 -927.75 -3.85 -12.42 16 3 C 0.01 0.14 8.89 127.69 1.13 1.28 16 4 C 0.12 2.22 1.84 44.17 0.08 2.30 16 5 H 0.08 1.15 8.00 -2.39 -0.02 1.13 16 6 C 0.11 2.45 5.28 86.38 0.46 2.90 16 7 N -1.11 -29.80 5.53 -187.48 -1.04 -30.84 16 8 S 2.63 104.98 4.97 -56.49 -0.28 104.70 16 9 O -0.99 -44.38 17.39 -127.65 -2.22 -46.60 16 10 O -0.99 -48.32 17.39 -127.65 -2.22 -50.54 16 11 C -0.56 -22.00 5.96 71.98 0.43 -21.57 16 12 C -0.01 -0.66 1.03 -52.92 -0.05 -0.71 16 13 C -0.61 -34.15 7.51 25.60 0.19 -33.95 16 14 H 0.04 2.20 7.82 -2.91 -0.02 2.17 16 15 C 0.00 0.22 5.39 84.66 0.46 0.68 16 16 N -0.91 -52.27 13.58 21.45 0.29 -51.97 16 17 Si 1.09 51.48 29.91 68.60 2.05 53.53 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C -0.18 -7.50 9.92 30.62 0.30 -7.20 16 22 C -0.16 -6.67 8.78 30.62 0.27 -6.40 16 23 C -0.05 -1.18 3.51 -19.87 -0.07 -1.25 16 24 C -0.13 -2.59 9.67 22.27 0.22 -2.37 16 25 C -0.10 -1.82 10.04 22.26 0.22 -1.60 16 26 C -0.16 -3.57 10.03 22.32 0.22 -3.35 16 27 C 0.07 1.78 7.30 22.38 0.16 1.95 16 28 F -0.15 -4.24 17.27 44.97 0.78 -3.47 16 29 C -0.13 -3.34 8.69 22.31 0.19 -3.14 16 30 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.93 6.68 -2.39 -0.02 0.92 16 33 H 0.08 0.92 6.33 -2.39 -0.02 0.91 16 34 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 35 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.10 1.59 6.08 -2.39 -0.01 1.57 16 37 H 0.08 1.96 7.51 -2.38 -0.02 1.94 16 38 H 0.42 9.47 8.74 -96.74 -0.85 8.62 16 39 H 0.12 4.82 7.69 -2.39 -0.02 4.80 16 40 H 0.14 4.15 8.08 -2.40 -0.02 4.13 16 41 H 0.27 15.04 6.09 -92.70 -0.56 14.47 16 42 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 44 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.15 2.16 8.04 -2.91 -0.02 2.13 16 47 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 49 H 0.14 3.44 7.71 -2.91 -0.02 3.42 16 Total: -1.00 -76.03 414.63 -0.76 -76.79 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.32 Total: 31.75 kcal Atomic # 6 Polarization: -76.33 SS G_CDS: 5.41 Total: -70.92 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -4.60 Total: -95.23 kcal Atomic # 8 Polarization: -92.70 SS G_CDS: -4.44 Total: -97.14 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Atomic # 16 Polarization: 104.98 SS G_CDS: -0.28 Total: 104.70 kcal Total: -76.03 -0.76 -76.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253432021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.927 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds