Wall clock time and date at job start Tue Mar 31 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47082 * 90.00608 * 3 2 1 5 5 H 1.48505 * 109.46981 * 210.00632 * 3 2 1 6 6 H 1.48502 * 109.47301 * 330.00319 * 3 2 1 7 7 C 1.39921 * 119.99786 * 179.73350 * 2 1 3 8 8 H 1.08001 * 120.00252 * 154.24850 * 7 2 1 9 9 C 1.41097 * 119.99995 * 334.24901 * 7 2 1 10 10 C 1.40855 * 120.28420 * 143.68613 * 9 7 2 11 11 Br 1.89106 * 120.10541 * 359.95516 * 10 9 7 12 12 C 1.37565 * 119.79255 * 179.97438 * 10 9 7 13 13 C 1.38898 * 120.37703 * 359.97438 * 12 10 9 14 14 Br 1.89098 * 119.70629 * 179.97438 * 13 12 10 15 15 C 1.38447 * 120.58553 * 0.02562 * 13 12 10 16 16 C 1.38323 * 120.19259 * 359.69072 * 15 13 12 17 17 O 1.35651 * 120.18849 * 180.27965 * 16 15 13 18 18 C 1.42900 * 117.00362 * 0.27705 * 17 16 15 19 19 F 1.39895 * 109.47337 * 300.00426 * 18 17 16 20 20 F 1.39906 * 109.46749 * 60.00307 * 18 17 16 21 21 H 0.97005 * 120.00344 * 172.99509 * 1 2 3 22 22 H 1.07999 * 119.81052 * 179.97438 * 12 10 9 23 23 H 1.07995 * 119.90084 * 179.97438 * 15 13 12 24 24 H 1.08997 * 109.46856 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4905 2.0463 1.4001 5 1 3.5404 1.4401 -0.7002 6 1 1.4403 2.6527 -0.7000 7 6 2.0084 -1.2118 0.0056 8 1 3.0079 -1.2602 -0.4005 9 6 1.4079 -2.3705 0.5419 10 6 1.6412 -3.6287 -0.0467 11 35 2.7618 -3.7734 -1.5631 12 6 1.0511 -4.7520 0.4848 13 6 0.2271 -4.6523 1.5986 14 35 -0.5750 -6.2085 2.3131 15 6 -0.0129 -3.4235 2.1895 16 6 0.5729 -2.2794 1.6784 17 8 0.3421 -1.0763 2.2609 18 6 -0.5132 -1.0630 3.4056 19 9 -1.7732 -1.5573 3.0520 20 9 0.0383 -1.8669 4.4091 21 1 -0.4851 -0.8338 -0.1024 22 1 1.2295 -5.7168 0.0335 23 1 -0.6558 -3.3587 3.0549 24 1 -0.6130 -0.0416 3.7727 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263623160.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:56 Heat of formation + Delta-G solvation = -143.298175 kcal Electronic energy + Delta-G solvation = -18026.530060 eV Core-core repulsion = 14474.176225 eV Total energy + Delta-G solvation = -3552.353835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 369.876 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.21456 -48.21460 -40.66806 -38.05375 -35.93894 -33.19324 -31.91003 -30.46881 -29.89758 -27.24636 -26.28452 -23.04124 -22.87589 -20.28855 -19.37470 -18.77975 -18.64395 -16.94023 -16.81309 -16.06705 -15.65927 -15.50423 -14.99200 -14.76824 -14.58388 -14.40510 -13.96315 -13.74935 -13.49772 -13.37233 -12.78282 -12.63374 -12.18617 -12.08634 -11.91632 -11.53074 -11.14186 -10.98991 -10.84271 -10.67106 -9.55494 -9.30025 -9.14127 -6.54494 0.37409 0.54395 0.77505 1.21158 1.57275 1.62908 1.83427 2.05077 2.34756 2.50067 2.63673 3.14213 3.60995 3.82038 4.04374 4.21143 4.40639 4.75252 4.99630 5.25308 5.35445 5.59773 5.64114 5.94188 6.09866 6.54152 6.74826 7.99140 Molecular weight = 369.88amu Principal moments of inertia in cm(-1) A = 0.009984 B = 0.006949 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.686119 B = 4028.401704 C = 6514.643190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.020 3.980 3 Si 1.109 2.891 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.090 0.910 9 C 0.087 3.913 10 C -0.189 4.189 11 Br -0.057 7.057 12 C -0.037 4.037 13 C -0.192 4.192 14 Br -0.063 7.063 15 C -0.124 4.124 16 C 0.006 3.994 17 O -0.303 6.303 18 C 0.398 3.602 19 F -0.215 7.215 20 F -0.214 7.214 21 H 0.278 0.722 22 H 0.130 0.870 23 H 0.124 0.876 24 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -2.653 2.916 3.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.202 4.202 3 Si 0.927 3.073 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.197 1.197 7 C -0.529 4.529 8 H 0.108 0.892 9 C 0.081 3.919 10 C -0.270 4.270 11 Br 0.027 6.973 12 C -0.058 4.058 13 C -0.273 4.273 14 Br 0.021 6.979 15 C -0.144 4.144 16 C -0.040 4.040 17 O -0.220 6.220 18 C 0.307 3.693 19 F -0.197 7.197 20 F -0.196 7.196 21 H 0.090 0.910 22 H 0.148 0.852 23 H 0.142 0.858 24 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.514 -1.513 2.637 3.083 hybrid contribution -0.312 -1.873 0.343 1.929 sum 0.202 -3.385 2.980 4.514 Atomic orbital electron populations 1.70468 1.08722 1.32800 1.26596 1.28124 0.95383 1.06658 0.89987 0.83073 0.74958 0.70231 0.79065 1.18571 1.18807 1.19678 1.20770 1.03423 0.94147 1.34523 0.89178 1.17141 0.91344 0.93261 0.90128 1.21352 1.10312 0.95407 0.99966 1.96326 1.65212 1.98152 1.37560 1.20602 0.94292 0.97262 0.93690 1.20634 1.11325 0.91172 1.04128 1.96408 1.81748 1.34230 1.85470 1.21032 1.00995 0.91553 1.00867 1.18874 1.05393 0.83312 0.96375 1.86685 1.64136 1.29132 1.42029 1.24069 0.73024 0.94806 0.77380 1.93027 1.43887 1.90636 1.92101 1.93034 1.85753 1.78369 1.62433 0.91041 0.85181 0.85840 0.76753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.01 11.92 21.83 0.26 -36.75 14 2 C 0.02 0.89 4.21 85.24 0.36 1.25 14 3 Si 1.11 39.27 30.00 68.60 2.06 41.33 14 4 H -0.26 -8.73 7.11 99.48 0.71 -8.02 14 5 H -0.26 -8.83 7.11 99.48 0.71 -8.12 14 6 H -0.27 -9.42 7.11 99.48 0.71 -8.71 14 7 C -0.50 -24.14 8.04 23.38 0.19 -23.95 14 8 H 0.09 4.30 7.34 -2.91 -0.02 4.27 14 9 C 0.09 4.20 5.01 -21.18 -0.11 4.10 14 10 C -0.19 -8.51 6.27 22.75 0.14 -8.37 14 11 Br -0.06 -2.24 32.29 -20.37 -0.66 -2.89 14 12 C -0.04 -1.54 9.49 22.27 0.21 -1.32 14 13 C -0.19 -8.02 6.24 22.48 0.14 -7.88 14 14 Br -0.06 -2.16 33.68 -20.37 -0.69 -2.84 14 15 C -0.12 -5.42 7.98 22.34 0.18 -5.25 14 16 C 0.01 0.27 5.52 23.05 0.13 0.39 14 17 O -0.30 -13.11 7.31 -89.66 -0.66 -13.77 14 18 C 0.40 13.44 5.98 113.37 0.68 14.12 14 19 F -0.21 -7.86 15.57 44.97 0.70 -7.16 14 20 F -0.21 -7.46 15.60 44.97 0.70 -6.76 14 21 H 0.28 14.42 7.25 -92.70 -0.67 13.75 14 22 H 0.13 4.90 8.06 -2.91 -0.02 4.87 14 23 H 0.12 5.21 5.09 -2.91 -0.01 5.19 14 24 H 0.22 4.95 8.14 -2.39 -0.02 4.93 14 Total: -1.00 -52.60 262.30 5.01 -47.59 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.37 Total: 8.16 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 1.92 Total: -26.91 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.26 Total: -36.75 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.66 Total: -13.77 kcal Atomic # 9 Polarization: -15.32 SS G_CDS: 1.40 Total: -13.92 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.06 Total: 41.33 kcal Atomic # 35 Polarization: -4.39 SS G_CDS: -1.34 Total: -5.74 kcal Total: -52.60 5.01 -47.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263623160.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.708 kcal (2) G-P(sol) polarization free energy of solvation -52.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds