Wall clock time and date at job start Tue Mar 31 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86800 * 119.99524 * 2 1 4 4 H 1.48502 * 109.47000 * 275.35612 * 3 2 1 5 5 H 1.48507 * 109.47127 * 35.35216 * 3 2 1 6 6 H 1.48498 * 109.47093 * 155.35526 * 3 2 1 7 7 C 1.39878 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00086 * 335.12337 * 7 2 1 9 9 C 1.41136 * 120.00032 * 155.12175 * 7 2 1 10 10 C 1.40935 * 120.19799 * 310.54912 * 9 7 2 11 11 Br 1.89104 * 120.10228 * 0.02562 * 10 9 7 12 12 C 1.36536 * 119.79658 * 180.02562 * 10 9 7 13 13 C 1.39273 * 120.20308 * 0.02562 * 12 10 9 14 14 O 1.35683 * 119.80183 * 179.97438 * 13 12 10 15 15 C 1.42897 * 116.99963 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.47143 * 300.00150 * 15 14 13 17 17 F 1.39902 * 109.47158 * 60.00302 * 15 14 13 18 18 C 1.39278 * 120.40003 * 0.27537 * 13 12 10 19 19 C 1.36549 * 120.19481 * 359.43990 * 18 13 12 20 20 Br 1.89104 * 120.09823 * 180.27624 * 19 18 13 21 21 H 0.96996 * 120.00595 * 359.97438 * 1 2 3 22 22 H 1.08010 * 119.90017 * 179.97438 * 12 10 9 23 23 H 1.09000 * 109.47091 * 180.02562 * 15 14 13 24 24 H 1.07997 * 119.90281 * 179.72711 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3771 2.1118 -1.3940 5 1 1.5013 2.6174 0.8101 6 1 3.5924 1.4103 0.5838 7 6 2.0085 -1.2113 -0.0005 8 1 1.5437 -2.1035 0.3925 9 6 3.3216 -1.2677 -0.5148 10 6 3.6121 -0.7168 -1.7790 11 35 2.2428 0.1024 -2.7940 12 6 4.8852 -0.7764 -2.2688 13 6 5.8952 -1.3797 -1.5234 14 8 7.1573 -1.4348 -2.0182 15 6 8.1466 -2.0667 -1.2032 16 9 8.2499 -1.3876 0.0156 17 9 7.7771 -3.3952 -0.9670 18 6 5.6161 -1.9323 -0.2758 19 6 4.3499 -1.8767 0.2323 20 35 3.9757 -2.6210 1.9300 21 1 -0.4851 0.8400 0.0004 22 1 5.1096 -0.3551 -3.2377 23 1 9.1086 -2.0423 -1.7151 24 1 6.4045 -2.4021 0.2935 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263624971.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:40 Heat of formation + Delta-G solvation = -130.730435 kcal Electronic energy + Delta-G solvation = -17717.168094 eV Core-core repulsion = 14165.359236 eV Total energy + Delta-G solvation = -3551.808857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 369.876 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.19689 -48.20358 -40.73367 -38.53184 -35.38755 -33.56816 -32.36176 -30.94242 -29.86474 -27.70772 -25.90196 -23.15385 -22.72480 -19.87669 -19.68270 -18.76371 -18.70262 -17.33637 -16.84286 -16.10947 -15.66366 -15.52048 -14.92638 -14.79894 -14.60360 -14.55538 -14.38589 -14.00863 -13.81953 -13.62166 -13.18087 -12.76930 -12.34323 -12.23777 -11.85557 -11.77595 -11.26739 -10.84701 -10.48827 -10.47741 -9.52088 -9.15479 -8.83421 -6.49462 0.21213 0.38201 0.80421 1.13419 1.31083 1.36510 1.44754 1.93154 2.16893 2.39695 2.68832 3.03444 3.65420 3.80714 3.90581 4.20304 4.32982 4.61097 4.86543 5.10068 5.21253 5.39727 5.55380 6.07374 6.25984 6.47405 6.75771 8.20588 Molecular weight = 369.88amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.006912 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.797289 B = 4049.896701 C = 5588.353163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.102 3.898 3 Si 0.870 3.130 4 H -0.206 1.206 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.478 4.478 8 H 0.078 0.922 9 C 0.096 3.904 10 C -0.161 4.161 11 Br -0.047 7.047 12 C -0.056 4.056 13 C 0.001 3.999 14 O -0.321 6.321 15 C 0.401 3.599 16 F -0.215 7.215 17 F -0.214 7.214 18 C -0.113 4.113 19 C -0.146 4.146 20 Br -0.057 7.057 21 H 0.292 0.708 22 H 0.149 0.851 23 H 0.239 0.761 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.678 -0.388 -3.500 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.118 4.118 3 Si 0.690 3.310 4 H -0.128 1.128 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.506 4.506 8 H 0.096 0.904 9 C 0.090 3.910 10 C -0.242 4.242 11 Br 0.038 6.962 12 C -0.077 4.077 13 C -0.044 4.044 14 O -0.240 6.240 15 C 0.312 3.688 16 F -0.197 7.197 17 F -0.196 7.196 18 C -0.134 4.134 19 C -0.227 4.227 20 Br 0.028 6.972 21 H 0.103 0.897 22 H 0.167 0.833 23 H 0.255 0.745 24 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.783 -0.210 -3.379 11.302 hybrid contribution 0.245 0.301 0.564 0.685 sum 11.028 0.092 -2.815 11.382 Atomic orbital electron populations 1.69742 1.08596 1.31069 1.34250 1.26064 0.94634 1.01807 0.89313 0.87028 0.80239 0.80430 0.83255 1.12847 1.19403 1.19443 1.18984 0.95874 0.97248 1.38499 0.90372 1.17467 0.93029 0.90253 0.90274 1.21580 0.93448 1.12906 0.96223 1.96395 1.51596 1.78878 1.69295 1.19976 0.89156 0.98549 1.00011 1.18186 0.84344 1.07226 0.94618 1.86423 1.16147 1.75908 1.45510 1.24329 0.94461 0.71598 0.78400 1.93063 1.96434 1.80407 1.49814 1.93060 1.93362 1.38317 1.94867 1.21084 0.96609 1.00426 0.95245 1.21616 0.94916 1.12245 0.93954 1.96387 1.96470 1.82637 1.21695 0.89695 0.83331 0.74546 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.51 13.93 21.82 0.30 -41.20 14 2 C 0.10 5.13 3.98 85.23 0.34 5.47 14 3 Si 0.87 38.79 24.95 68.60 1.71 40.50 14 4 H -0.21 -8.45 5.64 99.48 0.56 -7.89 14 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 14 6 H -0.27 -12.82 7.11 99.48 0.71 -12.11 14 7 C -0.48 -24.74 7.96 23.38 0.19 -24.56 14 8 H 0.08 4.42 7.90 -2.91 -0.02 4.39 14 9 C 0.10 4.59 4.44 -21.25 -0.09 4.49 14 10 C -0.16 -7.03 5.07 22.53 0.11 -6.92 14 11 Br -0.05 -1.93 27.40 -20.37 -0.56 -2.49 14 12 C -0.06 -2.17 9.65 22.12 0.21 -1.96 14 13 C 0.00 0.04 6.51 22.77 0.15 0.18 14 14 O -0.32 -9.48 10.42 -90.01 -0.94 -10.41 14 15 C 0.40 8.82 5.98 113.37 0.68 9.50 14 16 F -0.22 -5.75 15.58 44.97 0.70 -5.05 14 17 F -0.21 -5.65 15.54 44.97 0.70 -4.95 14 18 C -0.11 -4.50 7.91 22.13 0.17 -4.32 14 19 C -0.15 -6.54 6.24 22.54 0.14 -6.40 14 20 Br -0.06 -2.33 32.55 -20.37 -0.66 -2.99 14 21 H 0.29 13.66 8.30 -92.71 -0.77 12.89 14 22 H 0.15 4.88 8.06 -2.91 -0.02 4.86 14 23 H 0.24 1.99 8.14 -2.39 -0.02 1.97 14 24 H 0.14 5.03 5.06 -2.91 -0.01 5.01 14 Total: -1.00 -57.06 255.41 4.28 -52.78 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: 1.13 Total: -1.68 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 1.90 Total: -24.51 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.30 Total: -41.20 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.94 Total: -10.41 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 1.40 Total: -10.00 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.71 Total: 40.50 kcal Atomic # 35 Polarization: -4.26 SS G_CDS: -1.22 Total: -5.48 kcal Total: -57.06 4.28 -52.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263624971.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.953 kcal (2) G-P(sol) polarization free energy of solvation -57.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds