Wall clock time and date at job start Tue Mar 31 2020 05:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00107 * 2 1 4 4 O 1.20828 * 119.99471 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00262 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.34479 * 59.79928 * 5 3 2 7 7 C 1.55297 * 109.40319 * 299.99796 * 5 3 2 8 8 S 1.79401 * 109.72311 * 168.64945 * 7 5 3 9 9 C 1.82419 * 106.80927 * 86.88732 * 8 7 5 10 10 C 1.54644 * 110.54074 * 319.25560 * 9 8 7 11 11 N 1.45582 * 108.47705 * 321.27067 * 10 9 8 12 12 C 1.46905 * 110.99653 * 227.96995 * 11 10 9 13 13 C 1.50702 * 109.47256 * 53.15237 * 12 11 10 14 14 O 1.21280 * 119.99830 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99884 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00052 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47431 * 89.99361 * 16 15 13 18 18 H 1.07999 * 119.99404 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00178 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00103 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99870 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47085 * 120.00496 * 21 19 17 24 24 H 1.48507 * 109.47409 * 240.00612 * 21 19 17 25 25 C 1.46498 * 119.99951 * 359.97438 * 15 13 12 26 26 C 1.53005 * 109.46873 * 90.00602 * 25 15 13 27 27 C 1.47207 * 109.47129 * 180.02562 * 26 25 15 28 28 N 9.87461 * 108.77322 * 340.26189 * 2 1 3 29 29 C 1.45385 * 109.40696 * 179.61060 * 5 3 2 30 30 H 1.09001 * 109.47332 * 300.00342 * 1 2 3 31 31 H 1.09002 * 109.46850 * 60.00496 * 1 2 3 32 32 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.42769 * 288.72362 * 7 5 3 34 34 H 1.08994 * 109.43002 * 48.57017 * 7 5 3 35 35 H 1.09007 * 109.25986 * 198.98821 * 9 8 7 36 36 H 1.08998 * 109.23619 * 79.51434 * 9 8 7 37 37 H 1.09001 * 109.63807 * 201.56640 * 10 9 8 38 38 H 1.09004 * 109.80330 * 81.06379 * 10 9 8 39 39 H 1.08998 * 109.46881 * 173.15061 * 12 11 10 40 40 H 1.08997 * 109.46843 * 293.14414 * 12 11 10 41 41 H 1.09003 * 109.47174 * 209.99746 * 16 15 13 42 42 H 1.09000 * 109.46972 * 329.99810 * 16 15 13 43 43 H 0.96994 * 120.00234 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.47386 * 209.99941 * 25 15 13 45 45 H 1.08998 * 109.47329 * 330.00324 * 25 15 13 46 46 H 1.08999 * 109.46720 * 299.99411 * 26 25 15 47 47 H 1.08998 * 109.47370 * 59.99747 * 26 25 15 48 48 H 1.09000 * 108.24902 * 305.29125 * 29 5 3 49 49 H 1.08995 * 108.25232 * 62.29355 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9536 0.7774 -0.8897 7 6 4.1204 0.5703 1.2676 8 16 5.8963 0.3648 1.1189 9 6 6.6593 1.8984 1.7463 10 6 5.8604 3.1349 1.2728 11 7 5.4235 2.9053 -0.0968 12 6 5.7174 4.0682 -0.9449 13 6 7.1750 4.4286 -0.8161 14 8 7.8977 3.7807 -0.0889 15 7 7.6751 5.4714 -1.5081 16 6 9.0919 5.8220 -1.3824 17 6 9.8884 5.0752 -2.4211 18 1 9.3890 4.4066 -3.1066 19 6 11.2544 5.2463 -2.4970 20 7 11.8624 6.0609 -1.6625 21 14 12.2414 4.3211 -3.7850 22 1 11.3283 3.4754 -4.5952 23 1 12.9324 5.2922 -4.6709 24 1 13.2482 3.4605 -3.1133 25 6 6.8018 6.2542 -2.3860 26 6 6.1827 7.4070 -1.5932 27 6 5.3047 8.1933 -2.4751 28 7 4.6299 8.8000 -3.1575 29 6 3.9769 2.6696 -0.0098 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.8979 1.1767 2.1456 34 1 3.6499 -0.4070 1.3741 35 1 7.6824 1.9682 1.3767 36 1 6.6715 1.8737 2.8359 37 1 6.4969 4.0189 1.3111 38 1 4.9916 3.2812 1.9147 39 1 5.4935 3.8260 -1.9838 40 1 5.1049 4.9126 -0.6287 41 1 9.2154 6.8947 -1.5318 42 1 9.4466 5.5504 -0.3882 43 1 12.8234 6.1810 -1.7156 44 1 7.3852 6.6554 -3.2149 45 1 6.0099 5.6143 -2.7753 46 1 5.5993 7.0059 -0.7644 47 1 6.9746 8.0469 -1.2039 48 1 3.4996 3.1603 -0.8580 49 1 3.6117 3.1390 0.9036 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328597815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:15 Heat of formation + Delta-G solvation = -59.070793 kcal Electronic energy + Delta-G solvation = -32111.946996 eV Core-core repulsion = 27781.008768 eV Total energy + Delta-G solvation = -4330.938227 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12475 -39.93920 -38.16855 -36.96883 -36.68235 -35.33262 -33.96094 -32.91193 -31.08783 -30.87149 -28.64866 -28.06159 -26.94670 -25.64781 -24.08102 -23.63354 -22.91943 -21.58000 -20.45387 -18.69335 -18.02858 -17.68120 -17.27152 -16.89499 -16.70347 -16.48979 -16.21665 -15.74707 -15.48726 -15.23096 -14.82018 -14.68228 -14.47749 -14.26302 -13.97227 -13.78744 -13.71596 -13.46883 -13.02707 -12.82904 -12.80427 -12.62171 -12.54132 -12.47792 -12.28835 -12.08582 -11.98063 -11.78294 -11.58920 -11.32018 -11.25972 -11.15804 -10.99951 -10.90005 -10.86470 -10.66337 -10.50404 -10.20390 -9.71751 -9.64606 -8.99418 -8.63028 -8.49695 -7.89598 -7.36635 -6.11362 -4.15657 1.64834 1.87349 2.29349 2.68410 2.77172 2.82279 3.17938 3.27777 3.36465 3.39546 3.45961 3.84259 4.15920 4.17360 4.40537 4.41450 4.61469 4.73514 4.80277 4.81929 4.84129 4.94934 5.01445 5.05073 5.12058 5.14299 5.17563 5.22203 5.24867 5.28960 5.38804 5.51932 5.56190 5.60974 5.64839 5.76349 5.79807 6.01362 6.01622 6.22299 6.69077 6.80611 6.94062 7.29136 7.36941 7.38291 7.53066 7.85065 8.13790 8.18103 8.78750 8.93472 9.50372 10.96780 Molecular weight = 369.16amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.002852 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.552609 B = 9815.660122 C =11817.796362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.471 3.529 4 O -0.507 6.507 5 C -0.065 4.065 6 H 0.130 0.870 7 C -0.088 4.088 8 S -0.215 6.215 9 C -0.065 4.065 10 C 0.035 3.965 11 N -0.480 5.480 12 C 0.027 3.973 13 C 0.508 3.492 14 O -0.514 6.514 15 N -0.596 5.596 16 C 0.246 3.754 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.116 3.884 26 C -0.050 4.050 27 C 0.216 3.784 28 N -0.443 5.443 29 C 0.043 3.957 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.047 0.953 43 H 0.263 0.737 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.076 0.924 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.673 -8.214 6.751 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.312 3.688 4 O -0.394 6.394 5 C -0.087 4.087 6 H 0.147 0.853 7 C -0.237 4.237 8 S 0.014 5.986 9 C -0.213 4.213 10 C -0.094 4.094 11 N -0.203 5.203 12 C -0.104 4.104 13 C 0.294 3.706 14 O -0.389 6.389 15 N -0.328 5.328 16 C 0.128 3.872 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.209 1.209 25 C -0.010 4.010 26 C -0.091 4.091 27 C -0.102 4.102 28 N -0.121 5.121 29 C -0.085 4.085 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.122 0.878 47 H 0.136 0.864 48 H 0.095 0.905 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.489 -8.590 5.595 22.021 hybrid contribution -0.466 1.283 0.198 1.379 sum -19.956 -7.307 5.792 22.027 Atomic orbital electron populations 1.23296 0.76204 1.03829 1.02603 1.86515 1.23457 1.33188 1.83879 1.23727 0.91748 0.81368 0.71973 1.90681 1.67183 1.36357 1.45220 1.20236 0.86286 0.99552 1.02632 0.85275 1.23493 0.97782 1.04640 0.97790 1.86190 1.00569 1.24537 1.87283 1.24023 1.03852 0.92454 1.01020 1.22869 0.98748 0.99575 0.88256 1.62887 1.11184 1.36629 1.09626 1.22362 0.95664 0.92511 0.99863 1.20042 0.88742 0.80773 0.81007 1.90658 1.60168 1.49816 1.38270 1.48222 1.12041 1.29158 1.43367 1.19349 0.73114 0.95934 0.98819 1.21438 0.92235 1.26275 1.16578 0.92258 1.24906 0.97646 0.95265 0.96133 1.69922 1.09925 1.36622 1.36857 0.86471 0.80110 0.79694 0.81333 1.19713 1.21063 1.20876 1.21320 0.94598 0.91703 0.93399 1.19894 0.96687 0.96729 0.95833 1.29059 0.93579 0.93627 0.93964 1.81188 1.10875 1.10088 1.09909 1.20801 0.89468 0.94901 1.03355 0.91887 0.91798 0.87945 0.89972 0.86921 0.85828 0.90839 0.88683 0.93605 0.87690 0.92164 0.94794 0.93549 0.92738 0.88605 0.90665 0.87848 0.86441 0.90507 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.15 10.30 -39.27 -0.40 -3.56 16 3 C 0.47 4.76 7.22 36.00 0.26 5.02 16 4 O -0.51 -6.28 15.53 -18.75 -0.29 -6.57 16 5 C -0.06 -0.63 2.54 -94.14 -0.24 -0.87 16 6 H 0.13 1.28 8.12 -51.93 -0.42 0.86 16 7 C -0.09 -0.83 5.28 38.38 0.20 -0.63 16 8 S -0.22 -2.68 21.11 -107.50 -2.27 -4.95 16 9 C -0.06 -0.84 6.66 38.02 0.25 -0.59 16 10 C 0.04 0.43 4.44 -3.67 -0.02 0.42 16 11 N -0.48 -5.91 3.89 -240.68 -0.94 -6.84 16 12 C 0.03 0.33 3.83 -4.97 -0.02 0.31 16 13 C 0.51 8.43 6.95 -10.99 -0.08 8.36 16 14 O -0.51 -10.43 12.24 5.56 0.07 -10.37 16 15 N -0.60 -10.05 2.46 -175.06 -0.43 -10.48 16 16 C 0.25 5.53 5.16 -5.20 -0.03 5.50 16 17 C -0.53 -13.62 9.39 -34.44 -0.32 -13.95 16 18 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 21 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.12 1.44 5.17 -4.04 -0.02 1.42 16 26 C -0.05 -0.48 6.03 -29.51 -0.18 -0.66 16 27 C 0.22 2.52 15.43 -20.78 -0.32 2.20 16 28 N -0.44 -6.41 18.53 42.13 0.78 -5.63 16 29 C 0.04 0.45 3.40 -7.45 -0.03 0.42 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.73 7.98 -51.78 -0.41 0.31 16 34 H 0.11 0.94 7.88 -51.78 -0.41 0.54 16 35 H 0.12 1.99 6.93 -51.92 -0.36 1.63 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.33 5.50 -51.93 -0.29 1.04 16 38 H 0.05 0.48 6.42 -51.93 -0.33 0.15 16 39 H 0.11 1.17 7.40 -51.93 -0.38 0.79 16 40 H 0.06 0.58 7.12 -51.93 -0.37 0.21 16 41 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.05 1.19 7.42 -51.93 -0.39 0.80 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.10 1.29 8.07 -51.93 -0.42 0.88 16 45 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 46 H 0.10 0.80 7.22 -51.93 -0.37 0.42 16 47 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.08 0.79 7.23 -51.93 -0.38 0.41 16 49 H 0.05 0.56 6.38 -51.93 -0.33 0.23 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -32.80 410.71 -8.41 -41.21 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.27 Total: -0.55 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 0.44 Total: 9.82 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.15 Total: -47.23 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.63 Total: -20.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.27 Total: -4.95 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.80 -8.41 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328597815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.863 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds