Wall clock time and date at job start Tue Mar 31 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86798 * 119.99896 * 2 1 4 4 H 1.48501 * 109.47544 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47212 * 300.00106 * 3 2 1 6 6 H 1.48504 * 109.47075 * 59.99857 * 3 2 1 7 7 C 1.38651 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00429 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00379 * 185.05598 * 9 7 2 11 11 C 1.38885 * 120.06787 * 354.46520 * 10 9 7 12 12 C 1.38098 * 119.92932 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.07181 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93203 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.48205 * 339.98669 * 14 13 12 16 16 N 1.46350 * 109.48002 * 219.95088 * 14 13 12 17 17 C 1.39788 * 112.13571 * 182.04411 * 16 14 13 18 18 C 1.39604 * 117.96764 * 206.15424 * 17 16 14 19 19 F 1.35100 * 119.81947 * 0.12971 * 18 17 16 20 20 C 1.38008 * 120.35349 * 180.15758 * 18 17 16 21 21 C 1.38510 * 119.74721 * 359.91226 * 20 18 17 22 22 F 1.35101 * 120.01361 * 179.97438 * 21 20 18 23 23 C 1.38097 * 119.97269 * 359.97438 * 21 20 18 24 24 C 1.38260 * 122.17220 * 26.09879 * 17 16 14 25 25 C 1.50024 * 122.67342 * 359.58784 * 24 17 16 26 26 H 1.09001 * 109.92906 * 129.70399 * 25 24 17 27 27 C 1.51142 * 110.51906 * 252.15634 * 25 24 17 28 28 C 1.30947 * 110.49881 * 141.03633 * 27 25 24 29 29 C 1.51581 * 110.54500 * 359.97438 * 28 27 25 30 30 C 1.53042 * 109.47757 * 100.00256 * 14 13 12 31 31 H 1.09001 * 112.69127 * 57.26100 * 30 14 13 32 32 C 1.38305 * 120.13740 * 0.23786 * 13 12 11 33 33 C 1.38103 * 120.06688 * 359.48484 * 32 13 12 34 34 H 0.96991 * 120.00375 * 359.97438 * 1 2 3 35 35 H 1.08002 * 120.03108 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.96431 * 179.97438 * 12 11 10 37 37 H 1.00892 * 111.00265 * 306.83106 * 16 14 13 38 38 H 1.08000 * 120.12564 * 179.97438 * 20 18 17 39 39 H 1.08010 * 119.66492 * 179.97438 * 23 21 20 40 40 H 1.08004 * 124.74383 * 320.90570 * 27 25 24 41 41 H 1.08006 * 124.72592 * 180.27022 * 28 27 25 42 42 H 1.09007 * 110.60222 * 97.62163 * 29 28 27 43 43 H 1.09003 * 110.60376 * 220.57239 * 29 28 27 44 44 H 1.07996 * 119.96305 * 179.72041 * 32 13 12 45 45 H 1.07995 * 120.03197 * 180.25732 * 33 32 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1045 11 6 3.4573 -3.4394 0.0921 12 6 4.2025 -4.5970 0.2008 13 6 3.5687 -5.8204 0.3214 14 6 4.3850 -7.0817 0.4392 15 1 5.3919 -6.8994 0.0639 16 7 3.7563 -8.1449 -0.3458 17 6 4.4453 -9.3565 -0.2386 18 6 4.3383 -10.2660 -1.2924 19 9 3.5871 -9.9578 -2.3721 20 6 4.9954 -11.4783 -1.2366 21 6 5.7661 -11.7921 -0.1294 22 9 6.4112 -12.9776 -0.0690 23 6 5.8749 -10.8925 0.9128 24 6 5.2170 -9.6694 0.8651 25 6 5.3842 -8.7357 2.0274 26 1 5.1833 -9.2634 2.9598 27 6 6.7758 -8.1461 2.0373 28 6 6.7373 -6.8858 2.3909 29 6 5.3108 -6.4541 2.6672 30 6 4.4569 -7.5077 1.9073 31 1 3.4724 -7.6584 2.3502 32 6 2.1874 -5.8891 0.3285 33 6 1.4366 -4.7346 0.2260 34 1 -0.4850 0.8399 0.0004 35 1 3.9527 -2.4844 -0.0024 36 1 5.2812 -4.5470 0.1908 37 1 2.7864 -8.2569 -0.0915 38 1 4.9097 -12.1793 -2.0537 39 1 6.4769 -11.1425 1.7740 40 1 7.6761 -8.6889 1.7897 41 1 7.6011 -6.2422 2.4696 42 1 5.0998 -6.4889 3.7361 43 1 5.1290 -5.4548 2.2717 44 1 1.6955 -6.8464 0.4183 45 1 0.3581 -4.7885 0.2358 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409160288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:34 Heat of formation + Delta-G solvation = -34.891804 kcal Electronic energy + Delta-G solvation = -32549.009120 eV Core-core repulsion = 27940.295154 eV Total energy + Delta-G solvation = -4608.713966 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.128 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.21414 -48.98647 -41.38889 -39.07554 -38.09979 -36.83358 -35.31507 -32.45274 -32.01817 -30.96718 -30.28956 -28.80182 -28.08762 -27.49202 -25.58793 -24.03286 -22.95904 -22.59674 -22.05218 -20.85904 -19.59701 -19.04419 -18.06313 -17.85631 -17.66824 -17.12054 -16.95347 -16.17951 -16.13341 -15.84245 -15.64180 -15.31891 -14.92040 -14.72048 -14.50035 -14.48175 -13.91937 -13.72635 -13.64087 -13.31235 -13.10703 -13.04431 -12.82810 -12.53889 -12.40400 -12.34954 -11.98697 -11.81870 -11.71942 -11.49816 -11.36211 -11.27686 -11.20103 -10.85607 -10.67724 -10.46261 -10.42874 -9.76802 -9.38979 -9.13898 -9.08594 -8.87108 -8.25030 -8.15042 -7.23734 -6.49753 -4.08543 0.68194 0.71891 2.02207 2.14095 2.19844 3.02522 3.09083 3.10807 3.16331 3.57685 3.79552 3.92638 4.03665 4.19402 4.38765 4.45161 4.51111 4.58108 4.68886 4.86562 4.97703 5.06470 5.11896 5.14063 5.22954 5.24725 5.34194 5.46388 5.52242 5.59348 5.61979 5.66474 5.67089 5.72719 5.84561 5.88375 5.99814 6.03633 6.12934 6.28051 6.31778 6.43059 6.59822 6.64823 6.79167 6.89088 6.98595 7.09080 7.21561 7.29269 7.38128 7.73503 7.95064 8.95950 9.65316 10.68151 Molecular weight = 369.13amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.002207 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.146519 B =12682.411298 C =13683.453082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.156 3.844 11 C -0.231 4.231 12 C -0.058 4.058 13 C -0.175 4.175 14 C 0.158 3.842 15 H 0.090 0.910 16 N -0.622 5.622 17 C 0.078 3.922 18 C 0.130 3.870 19 F -0.120 7.120 20 C -0.184 4.184 21 C 0.109 3.891 22 F -0.136 7.136 23 C -0.147 4.147 24 C -0.057 4.057 25 C -0.022 4.022 26 H 0.100 0.900 27 C -0.168 4.168 28 C -0.150 4.150 29 C -0.100 4.100 30 C -0.116 4.116 31 H 0.095 0.905 32 C -0.063 4.063 33 C -0.189 4.189 34 H 0.270 0.730 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.360 0.640 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.417 -20.156 4.320 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.077 4.077 13 C -0.176 4.176 14 C 0.050 3.950 15 H 0.108 0.892 16 N -0.252 5.252 17 C -0.022 4.022 18 C 0.108 3.892 19 F -0.098 7.098 20 C -0.204 4.204 21 C 0.089 3.911 22 F -0.114 7.114 23 C -0.167 4.167 24 C -0.060 4.060 25 C -0.040 4.040 26 H 0.117 0.883 27 C -0.185 4.185 28 C -0.167 4.167 29 C -0.137 4.137 30 C -0.136 4.136 31 H 0.114 0.886 32 C -0.081 4.081 33 C -0.208 4.208 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.190 0.810 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.199 -19.725 3.660 23.480 hybrid contribution 0.364 0.335 0.501 0.704 sum 12.563 -19.390 4.161 23.476 Atomic orbital electron populations 1.70041 1.05972 1.27645 1.45913 1.25298 0.95845 0.98876 0.96507 0.85649 0.79143 0.80360 0.78293 1.19078 1.20118 1.20120 1.21373 0.91822 0.80765 1.52804 0.88970 1.83978 1.34418 1.11498 1.78046 1.19392 0.90281 0.88053 0.92072 1.21131 0.93778 0.98850 1.11245 1.20493 0.98198 0.91547 0.97471 1.18868 0.93186 0.92705 1.12865 1.20229 0.97915 0.87985 0.88895 0.89180 1.57546 1.06674 1.02806 1.58198 1.18565 1.00353 0.91126 0.92120 1.17136 0.94494 0.93476 0.84071 1.91545 1.73365 1.93089 1.51843 1.20896 1.01408 0.97842 1.00265 1.17036 0.95990 0.82561 0.95482 1.91515 1.79464 1.43892 1.96554 1.21026 1.02759 0.93616 0.99268 1.19524 0.98112 0.94258 0.94125 1.19816 0.94327 0.94412 0.95452 0.88264 1.23215 0.96412 0.96335 1.02584 1.23603 0.98336 0.96274 0.98525 1.21755 0.91324 1.00345 1.00295 1.23022 0.98792 0.93971 0.97855 0.88626 1.20260 0.92790 0.96381 0.98715 1.20157 0.99550 0.90252 1.10851 0.92012 0.85482 0.87526 0.81035 0.83413 0.84339 0.85653 0.85420 0.90360 0.89239 0.87646 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -10.65 9.49 30.88 0.29 -10.35 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 9 O -0.18 -4.89 9.76 0.07 0.00 -4.89 16 10 C 0.16 3.60 6.65 -39.10 -0.26 3.34 16 11 C -0.23 -4.72 9.17 -39.39 -0.36 -5.08 16 12 C -0.06 -0.98 8.13 -39.61 -0.32 -1.31 16 13 C -0.17 -2.68 4.43 -104.57 -0.46 -3.15 16 14 C 0.16 1.97 1.97 -69.14 -0.14 1.84 16 15 H 0.09 1.22 7.17 -51.93 -0.37 0.84 16 16 N -0.62 -7.73 5.86 -53.32 -0.31 -8.04 16 17 C 0.08 0.89 6.10 -83.71 -0.51 0.38 16 18 C 0.13 1.48 7.29 -39.16 -0.29 1.20 16 19 F -0.12 -1.55 16.98 2.25 0.04 -1.51 16 20 C -0.18 -1.80 10.00 -39.57 -0.40 -2.19 16 21 C 0.11 1.04 7.29 -39.53 -0.29 0.75 16 22 F -0.14 -1.33 17.27 2.25 0.04 -1.30 16 23 C -0.15 -1.30 9.44 -39.36 -0.37 -1.67 16 24 C -0.06 -0.56 5.12 -104.67 -0.54 -1.09 16 25 C -0.02 -0.20 2.75 -92.33 -0.25 -0.45 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 C -0.17 -1.47 9.55 -35.80 -0.34 -1.81 16 28 C -0.15 -1.36 10.33 -35.58 -0.37 -1.73 16 29 C -0.10 -1.02 6.16 -26.15 -0.16 -1.18 16 30 C -0.12 -1.21 3.27 -88.59 -0.29 -1.50 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 C -0.06 -1.02 9.25 -39.61 -0.37 -1.39 16 33 C -0.19 -3.76 9.99 -39.39 -0.39 -4.16 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 36 H 0.11 1.55 7.97 -52.49 -0.42 1.13 16 37 H 0.36 4.18 6.83 -39.30 -0.27 3.91 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.14 0.96 8.05 -52.48 -0.42 0.54 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 43 H 0.09 1.06 5.78 -51.93 -0.30 0.76 16 44 H 0.11 1.41 6.54 -52.49 -0.34 1.06 16 45 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -29.53 374.42 -9.55 -39.08 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.79 Total: 8.59 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -5.91 Total: -28.59 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.45 Total: -32.10 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.00 Total: -4.89 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.53 -9.55 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409160288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.189 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds