Wall clock time and date at job start Tue Mar 31 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86798 * 119.99896 * 2 1 4 4 H 1.48501 * 109.47544 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47212 * 300.00106 * 3 2 1 6 6 H 1.48504 * 109.47075 * 59.99857 * 3 2 1 7 7 C 1.38651 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00429 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00379 * 185.05598 * 9 7 2 11 11 C 1.38885 * 120.06787 * 354.46520 * 10 9 7 12 12 C 1.38098 * 119.92932 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.07181 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93203 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.48205 * 339.98669 * 14 13 12 16 16 N 1.46350 * 109.48002 * 219.95088 * 14 13 12 17 17 C 1.39788 * 112.13571 * 182.04411 * 16 14 13 18 18 C 1.39604 * 117.96764 * 206.15424 * 17 16 14 19 19 F 1.35100 * 119.81947 * 0.12971 * 18 17 16 20 20 C 1.38008 * 120.35349 * 180.15758 * 18 17 16 21 21 C 1.38510 * 119.74721 * 359.91226 * 20 18 17 22 22 F 1.35101 * 120.01361 * 179.97438 * 21 20 18 23 23 C 1.38097 * 119.97269 * 359.97438 * 21 20 18 24 24 C 1.38260 * 122.17220 * 26.09879 * 17 16 14 25 25 C 1.50024 * 122.67342 * 359.58784 * 24 17 16 26 26 H 1.09001 * 109.92906 * 129.70399 * 25 24 17 27 27 C 1.51142 * 110.51906 * 252.15634 * 25 24 17 28 28 C 1.30947 * 110.49881 * 141.03633 * 27 25 24 29 29 C 1.51581 * 110.54500 * 359.97438 * 28 27 25 30 30 C 1.53042 * 109.47757 * 100.00256 * 14 13 12 31 31 H 1.09001 * 112.69127 * 57.26100 * 30 14 13 32 32 C 1.38305 * 120.13740 * 0.23786 * 13 12 11 33 33 C 1.38103 * 120.06688 * 359.48484 * 32 13 12 34 34 H 0.96991 * 120.00375 * 359.97438 * 1 2 3 35 35 H 1.08002 * 120.03108 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.96431 * 179.97438 * 12 11 10 37 37 H 1.00892 * 111.00265 * 306.83106 * 16 14 13 38 38 H 1.08000 * 120.12564 * 179.97438 * 20 18 17 39 39 H 1.08010 * 119.66492 * 179.97438 * 23 21 20 40 40 H 1.08004 * 124.74383 * 320.90570 * 27 25 24 41 41 H 1.08006 * 124.72592 * 180.27022 * 28 27 25 42 42 H 1.09007 * 110.60222 * 97.62163 * 29 28 27 43 43 H 1.09003 * 110.60376 * 220.57239 * 29 28 27 44 44 H 1.07996 * 119.96305 * 179.72041 * 32 13 12 45 45 H 1.07995 * 120.03197 * 180.25732 * 33 32 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1045 11 6 3.4573 -3.4394 0.0921 12 6 4.2025 -4.5970 0.2008 13 6 3.5687 -5.8204 0.3214 14 6 4.3850 -7.0817 0.4392 15 1 5.3919 -6.8994 0.0639 16 7 3.7563 -8.1449 -0.3458 17 6 4.4453 -9.3565 -0.2386 18 6 4.3383 -10.2660 -1.2924 19 9 3.5871 -9.9578 -2.3721 20 6 4.9954 -11.4783 -1.2366 21 6 5.7661 -11.7921 -0.1294 22 9 6.4112 -12.9776 -0.0690 23 6 5.8749 -10.8925 0.9128 24 6 5.2170 -9.6694 0.8651 25 6 5.3842 -8.7357 2.0274 26 1 5.1833 -9.2634 2.9598 27 6 6.7758 -8.1461 2.0373 28 6 6.7373 -6.8858 2.3909 29 6 5.3108 -6.4541 2.6672 30 6 4.4569 -7.5077 1.9073 31 1 3.4724 -7.6584 2.3502 32 6 2.1874 -5.8891 0.3285 33 6 1.4366 -4.7346 0.2260 34 1 -0.4850 0.8399 0.0004 35 1 3.9527 -2.4844 -0.0024 36 1 5.2812 -4.5470 0.1908 37 1 2.7864 -8.2569 -0.0915 38 1 4.9097 -12.1793 -2.0537 39 1 6.4769 -11.1425 1.7740 40 1 7.6761 -8.6889 1.7897 41 1 7.6011 -6.2422 2.4696 42 1 5.0998 -6.4889 3.7361 43 1 5.1290 -5.4548 2.2717 44 1 1.6955 -6.8464 0.4183 45 1 0.3581 -4.7885 0.2358 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409160288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:33 Heat of formation + Delta-G solvation = -49.336112 kcal Electronic energy + Delta-G solvation = -32549.635472 eV Core-core repulsion = 27940.295154 eV Total energy + Delta-G solvation = -4609.340318 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.128 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.96071 -49.88743 -42.27991 -40.65526 -39.04191 -38.19898 -36.39473 -34.30438 -32.93192 -32.05830 -31.78271 -29.64668 -29.26224 -28.27840 -27.43294 -25.23238 -23.85488 -23.61480 -23.24841 -22.26035 -20.63386 -19.77176 -19.72276 -18.92357 -18.63708 -18.39527 -17.98938 -17.06486 -16.92797 -16.69150 -16.47407 -16.32658 -16.21200 -16.14070 -15.99877 -15.49550 -15.42894 -15.11481 -14.82196 -14.54115 -14.27886 -14.07851 -13.79993 -13.79473 -13.50395 -13.42774 -13.15582 -12.98521 -12.79587 -12.72340 -12.53627 -12.39176 -12.25340 -12.09813 -12.06279 -12.01146 -11.54196 -11.16908 -10.82516 -10.58727 -9.87412 -9.83322 -9.73619 -9.05277 -8.85612 -8.46425 -6.14104 -0.07774 -0.05869 0.59734 0.67209 1.35776 1.36117 1.43558 1.53702 2.17935 2.26242 2.67521 2.85237 2.95878 3.18065 3.23933 3.43620 3.50637 3.62970 3.70307 3.83758 3.90264 4.00978 4.08363 4.10615 4.19593 4.30567 4.34755 4.43746 4.49004 4.57661 4.72179 4.73540 4.79084 4.84505 4.91913 4.94278 5.03618 5.04200 5.06367 5.17369 5.21678 5.26636 5.27279 5.51889 5.59448 5.63146 5.72418 5.77569 5.97065 6.00768 6.03986 6.16541 6.24447 6.98719 7.79925 8.76997 Molecular weight = 369.13amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.002207 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.146519 B =12682.411298 C =13683.453082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.410 4.410 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.115 3.885 11 C -0.237 4.237 12 C -0.055 4.055 13 C -0.145 4.145 14 C 0.166 3.834 15 H 0.088 0.912 16 N -0.635 5.635 17 C 0.066 3.934 18 C 0.111 3.889 19 F -0.135 7.135 20 C -0.180 4.180 21 C 0.108 3.892 22 F -0.136 7.136 23 C -0.135 4.135 24 C -0.055 4.055 25 C -0.016 4.016 26 H 0.120 0.880 27 C -0.163 4.163 28 C -0.157 4.157 29 C -0.102 4.102 30 C -0.116 4.116 31 H 0.100 0.900 32 C -0.055 4.055 33 C -0.200 4.200 34 H 0.272 0.728 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.362 0.638 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.141 0.859 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.611 -22.840 5.436 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.486 4.486 8 H 0.120 0.880 9 O -0.139 6.139 10 C 0.065 3.935 11 C -0.257 4.257 12 C -0.073 4.073 13 C -0.146 4.146 14 C 0.057 3.943 15 H 0.106 0.894 16 N -0.265 5.265 17 C -0.033 4.033 18 C 0.090 3.910 19 F -0.113 7.113 20 C -0.200 4.200 21 C 0.088 3.912 22 F -0.115 7.115 23 C -0.154 4.154 24 C -0.058 4.058 25 C -0.034 4.034 26 H 0.138 0.862 27 C -0.181 4.181 28 C -0.175 4.175 29 C -0.139 4.139 30 C -0.135 4.135 31 H 0.118 0.882 32 C -0.073 4.073 33 C -0.219 4.219 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.154 0.846 37 H 0.192 0.808 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.159 0.841 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.435 -22.477 4.779 27.681 hybrid contribution -0.481 0.715 0.180 0.880 sum 14.954 -21.761 4.959 26.865 Atomic orbital electron populations 1.70185 1.08011 1.28678 1.49058 1.26568 0.96832 1.02726 0.95998 0.84546 0.78318 0.74969 0.78496 1.17379 1.19544 1.19345 1.21840 0.92486 0.81400 1.52883 0.88046 1.83943 1.36002 1.12619 1.81357 1.19930 0.91597 0.87920 0.94061 1.21203 0.92999 0.99934 1.11515 1.20791 0.99570 0.90751 0.96229 1.19303 0.93197 0.93812 1.08258 1.20120 0.96816 0.86609 0.90716 0.89415 1.57457 1.07014 1.03485 1.58566 1.18613 1.01068 0.90729 0.92859 1.17314 0.95354 0.94347 0.83999 1.91507 1.73923 1.93295 1.52606 1.21029 1.00700 0.97428 1.00831 1.17113 0.95856 0.82669 0.95601 1.91522 1.79438 1.43971 1.96548 1.21235 1.01924 0.92654 0.99590 1.19574 0.97694 0.94767 0.93779 1.19825 0.94040 0.93556 0.95957 0.86242 1.23355 0.96663 0.96204 1.01860 1.23655 0.97929 0.96752 0.99161 1.21749 0.92337 0.99119 1.00730 1.22982 0.99623 0.95081 0.95861 0.88223 1.20618 0.93201 0.96541 0.96921 1.20395 0.99889 0.90512 1.11088 0.91900 0.86373 0.84560 0.80800 0.82132 0.81867 0.84125 0.84339 0.89534 0.91202 0.84098 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.31 13.67 21.61 0.30 -56.02 16 2 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 3 Si 1.02 42.53 29.55 68.60 2.03 44.55 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.41 -23.58 9.49 67.92 0.64 -22.94 16 8 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.82 9.76 -22.67 -0.22 -14.04 16 10 C 0.12 5.58 6.65 22.58 0.15 5.74 16 11 C -0.24 -9.93 9.17 22.39 0.21 -9.73 16 12 C -0.06 -1.78 8.13 22.25 0.18 -1.60 16 13 C -0.14 -4.17 4.43 -19.83 -0.09 -4.25 16 14 C 0.17 3.67 1.97 44.29 0.09 3.76 16 15 H 0.09 2.08 7.17 -2.39 -0.02 2.06 16 16 N -0.63 -14.18 5.86 -322.61 -1.89 -16.07 16 17 C 0.07 1.33 6.10 38.21 0.23 1.56 16 18 C 0.11 2.32 7.29 22.55 0.16 2.48 16 19 F -0.13 -3.34 16.98 44.97 0.76 -2.57 16 20 C -0.18 -3.06 10.00 22.28 0.22 -2.84 16 21 C 0.11 1.69 7.29 22.30 0.16 1.85 16 22 F -0.14 -2.24 17.27 44.97 0.78 -1.46 16 23 C -0.13 -1.81 9.44 22.41 0.21 -1.60 16 24 C -0.05 -0.86 5.12 -19.90 -0.10 -0.97 16 25 C -0.02 -0.22 2.75 -11.90 -0.03 -0.25 16 26 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 27 C -0.16 -2.15 9.55 25.84 0.25 -1.90 16 28 C -0.16 -2.29 10.33 25.98 0.27 -2.03 16 29 C -0.10 -1.78 6.16 30.97 0.19 -1.59 16 30 C -0.12 -2.01 3.27 -9.48 -0.03 -2.04 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 C -0.05 -1.70 9.25 22.25 0.21 -1.50 16 33 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 34 H 0.27 15.21 8.31 -92.72 -0.77 14.43 16 35 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 36 H 0.14 3.62 7.97 -2.91 -0.02 3.60 16 37 H 0.36 7.50 6.83 -89.70 -0.61 6.89 16 38 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.16 1.40 8.05 -2.91 -0.02 1.38 16 40 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.07 1.50 5.78 -2.39 -0.01 1.49 16 44 H 0.14 3.40 6.54 -2.91 -0.02 3.38 16 45 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -69.47 374.42 5.82 -63.66 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.46 Total: 28.64 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 3.61 Total: -46.69 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.60 Total: -72.08 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.22 Total: -14.04 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.54 Total: -4.03 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -69.47 5.82 -63.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409160288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.319 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds