Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86797 * 120.00358 * 2 1 4 4 H 1.48506 * 109.47097 * 89.99839 * 3 2 1 5 5 H 1.48496 * 109.47538 * 210.00162 * 3 2 1 6 6 H 1.48503 * 109.47133 * 330.00112 * 3 2 1 7 7 C 1.38661 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99790 * 359.97438 * 7 2 1 9 9 O 1.34829 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.35748 * 116.99763 * 174.93739 * 9 7 2 11 11 C 1.38881 * 120.06681 * 185.25465 * 10 9 7 12 12 C 1.38102 * 119.92898 * 179.67929 * 11 10 9 13 13 C 1.38306 * 120.06910 * 0.62118 * 12 11 10 14 14 C 1.50702 * 119.93244 * 179.70121 * 13 12 11 15 15 H 1.08994 * 109.47469 * 320.74712 * 14 13 12 16 16 N 1.46325 * 109.47933 * 200.72794 * 14 13 12 17 17 C 1.39786 * 112.21019 * 297.79132 * 16 14 13 18 18 C 1.39615 * 117.95274 * 154.17450 * 17 16 14 19 19 F 1.35107 * 119.81272 * 359.87136 * 18 17 16 20 20 C 1.38013 * 120.36773 * 179.82944 * 18 17 16 21 21 C 1.38519 * 119.72073 * 0.02562 * 20 18 17 22 22 F 1.35103 * 120.00638 * 180.02562 * 21 20 18 23 23 C 1.38088 * 119.98249 * 0.05419 * 21 20 18 24 24 C 1.38262 * 122.18705 * 334.15661 * 17 16 14 25 25 C 1.50022 * 122.66957 * 0.38240 * 24 17 16 26 26 H 1.08998 * 109.92808 * 229.33948 * 25 24 17 27 27 C 1.51141 * 110.66748 * 107.68569 * 25 24 17 28 28 C 1.30953 * 110.47963 * 219.10850 * 27 25 24 29 29 C 1.51587 * 110.54371 * 359.68122 * 28 27 25 30 30 C 1.53051 * 109.47562 * 80.77213 * 14 13 12 31 31 H 1.09001 * 112.72942 * 181.79419 * 30 14 13 32 32 C 1.38299 * 120.13569 * 359.67814 * 13 12 11 33 33 C 1.38102 * 120.07332 * 0.02562 * 32 13 12 34 34 H 0.96999 * 119.99884 * 359.97438 * 1 2 3 35 35 H 1.07999 * 120.03831 * 0.02562 * 11 10 9 36 36 H 1.07998 * 119.97191 * 180.32356 * 12 11 10 37 37 H 1.00896 * 111.00232 * 172.94326 * 16 14 13 38 38 H 1.08005 * 120.13928 * 179.97438 * 20 18 17 39 39 H 1.07996 * 119.65288 * 180.02562 * 23 21 20 40 40 H 1.08000 * 124.75970 * 39.11823 * 27 25 24 41 41 H 1.08004 * 124.72608 * 179.65518 * 28 27 25 42 42 H 1.09003 * 110.60997 * 139.73499 * 29 28 27 43 43 H 1.09001 * 110.61188 * 262.55445 * 29 28 27 44 44 H 1.08005 * 119.96450 * 180.02562 * 32 13 12 45 45 H 1.07998 * 120.03836 * 180.02562 * 33 32 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4001 5 1 3.5471 1.4401 -0.7000 6 1 1.4471 2.6527 -0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4058 0.1062 11 6 5.3555 -2.4725 0.2231 12 6 5.9789 -3.6995 0.3376 13 6 5.2293 -4.8617 0.3230 14 6 5.9133 -6.1993 0.4414 15 1 6.8404 -6.1852 -0.1315 16 7 5.0331 -7.2453 -0.0803 17 6 3.8439 -7.3467 0.6474 18 6 2.7205 -7.8607 -0.0030 19 9 2.8078 -8.2384 -1.2972 20 6 1.5216 -7.9860 0.6692 21 6 1.4345 -7.5984 1.9962 22 9 0.2639 -7.7190 2.6598 23 6 2.5443 -7.0883 2.6404 24 6 3.7551 -6.9577 1.9712 25 6 4.9193 -6.3903 2.7284 26 1 5.0276 -6.9046 3.6833 27 6 4.7343 -4.9080 2.9589 28 6 5.8734 -4.2771 2.8198 29 6 6.9841 -5.2523 2.4836 30 6 6.2263 -6.4840 1.9122 31 1 6.7515 -7.4282 2.0560 32 6 3.8531 -4.7988 0.2005 33 6 3.2233 -3.5746 0.0917 34 1 -0.4850 0.8400 0.0004 35 1 5.9419 -1.5656 0.2300 36 1 7.0533 -3.7519 0.4338 37 1 5.5103 -8.1335 -0.1188 38 1 0.6548 -8.3838 0.1623 39 1 2.4704 -6.7882 3.6751 40 1 3.7946 -4.4356 3.2041 41 1 6.0032 -3.2105 2.9290 42 1 7.6512 -4.8299 1.7322 43 1 7.5410 -5.5237 3.3804 44 1 3.2704 -5.7081 0.1898 45 1 2.1486 -3.5261 -0.0035 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409160289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = -0.517885 kcal Electronic energy + Delta-G solvation = -34690.556142 eV Core-core repulsion = 30083.332741 eV Total energy + Delta-G solvation = -4607.223401 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.128 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.95412 -48.85690 -42.01444 -38.91601 -38.12233 -36.25307 -35.51416 -32.37606 -31.99205 -30.71009 -30.07898 -28.80021 -28.47275 -27.44112 -25.40192 -23.82445 -22.75094 -22.53656 -21.89033 -20.96222 -19.33473 -18.79833 -18.00273 -17.70851 -17.62118 -17.17090 -16.76973 -16.08826 -16.01077 -15.74301 -15.47053 -15.21450 -14.91023 -14.62923 -14.46449 -14.17299 -13.83276 -13.73466 -13.64993 -13.35532 -13.04090 -12.80603 -12.44463 -12.32064 -12.24685 -12.18819 -12.07793 -11.97593 -11.79780 -11.46284 -11.25548 -11.08829 -10.84221 -10.73097 -10.64851 -10.50518 -10.15260 -9.60715 -9.28853 -8.95511 -8.91369 -8.53434 -8.16352 -7.92047 -7.10823 -6.39507 -4.05796 0.87801 0.90563 2.03877 2.26010 2.64521 3.21093 3.22278 3.25219 3.40024 3.65766 3.91544 4.17650 4.24327 4.36462 4.45896 4.54786 4.61812 4.78028 4.79906 4.88432 4.98367 5.10654 5.12898 5.18533 5.31572 5.39566 5.47916 5.55642 5.59979 5.66811 5.72671 5.74685 5.82929 5.88267 5.89618 5.93921 6.11887 6.17520 6.23607 6.34670 6.51830 6.60842 6.74797 6.82760 6.84797 7.01416 7.05802 7.15511 7.29257 7.40840 7.64608 7.83398 8.06659 8.95962 9.59205 10.68362 Molecular weight = 369.13amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.004010 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.487896 B = 6980.276213 C = 8340.705251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.260 1.260 6 H -0.283 1.283 7 C -0.387 4.387 8 H 0.105 0.895 9 O -0.220 6.220 10 C 0.160 3.840 11 C -0.192 4.192 12 C -0.063 4.063 13 C -0.156 4.156 14 C 0.151 3.849 15 H 0.096 0.904 16 N -0.624 5.624 17 C 0.089 3.911 18 C 0.116 3.884 19 F -0.122 7.122 20 C -0.181 4.181 21 C 0.112 3.888 22 F -0.134 7.134 23 C -0.143 4.143 24 C -0.053 4.053 25 C -0.013 4.013 26 H 0.094 0.906 27 C -0.156 4.156 28 C -0.141 4.141 29 C -0.088 4.088 30 C -0.122 4.122 31 H 0.091 0.909 32 C -0.068 4.068 33 C -0.217 4.217 34 H 0.279 0.721 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.358 0.642 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 -17.046 5.889 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.184 1.184 6 H -0.208 1.208 7 C -0.463 4.463 8 H 0.122 0.878 9 O -0.125 6.125 10 C 0.108 3.892 11 C -0.212 4.212 12 C -0.081 4.081 13 C -0.157 4.157 14 C 0.043 3.957 15 H 0.114 0.886 16 N -0.252 5.252 17 C -0.010 4.010 18 C 0.095 3.905 19 F -0.101 7.101 20 C -0.201 4.201 21 C 0.092 3.908 22 F -0.112 7.112 23 C -0.163 4.163 24 C -0.056 4.056 25 C -0.031 4.031 26 H 0.111 0.889 27 C -0.174 4.174 28 C -0.159 4.159 29 C -0.126 4.126 30 C -0.142 4.142 31 H 0.109 0.891 32 C -0.086 4.086 33 C -0.237 4.237 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.184 0.816 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.139 0.861 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.983 -16.321 5.303 20.930 hybrid contribution -0.139 0.385 0.532 0.671 sum 11.843 -15.936 5.835 20.695 Atomic orbital electron populations 1.69648 1.05557 1.28388 1.48244 1.24456 0.94999 0.98732 0.95817 0.86198 0.80340 0.81578 0.78860 1.19972 1.18416 1.20831 1.20746 0.76941 0.96535 1.52063 0.87772 1.83561 1.22546 1.25873 1.80539 1.19124 0.91683 0.85386 0.92981 1.20089 0.91882 0.97571 1.11632 1.20322 0.98027 0.91179 0.98575 1.18799 0.93653 0.92317 1.10953 1.20254 0.94519 0.89012 0.91961 0.88631 1.57359 1.05262 1.10391 1.52181 1.18155 0.92092 1.00464 0.90274 1.17058 0.92503 1.01700 0.79235 1.91524 1.96658 1.88668 1.33213 1.20907 0.98481 1.06465 0.94283 1.17036 0.82042 1.01602 0.90113 1.91522 1.45535 1.93862 1.80294 1.21038 0.91386 1.02159 1.01721 1.19469 0.95565 0.98742 0.91844 1.19688 0.90999 0.95126 0.97316 0.88867 1.22972 0.98671 0.93043 1.02746 1.23241 0.94672 0.98861 0.99088 1.21685 0.97040 0.93566 1.00275 1.23024 0.95650 0.98973 0.96591 0.89058 1.21212 0.93909 0.97172 0.96260 1.21227 1.00837 0.91876 1.09714 0.91118 0.86824 0.87031 0.81552 0.83324 0.84242 0.85817 0.85497 0.90578 0.90998 0.86138 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.96 55.48 0.77 -24.93 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.90 21.80 28.62 -169.99 -4.86 16.94 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.39 -10.98 9.95 30.89 0.31 -10.67 16 8 H 0.10 3.06 5.44 -52.49 -0.29 2.78 16 9 O -0.22 -5.78 8.59 0.06 0.00 -5.78 16 10 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 11 C -0.19 -3.60 9.90 -39.39 -0.39 -3.99 16 12 C -0.06 -0.95 6.17 -39.61 -0.24 -1.20 16 13 C -0.16 -2.36 2.99 -104.57 -0.31 -2.68 16 14 C 0.15 1.73 2.90 -69.15 -0.20 1.52 16 15 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 16 N -0.62 -7.27 5.92 -53.64 -0.32 -7.59 16 17 C 0.09 1.12 3.38 -83.71 -0.28 0.84 16 18 C 0.12 1.56 6.48 -39.15 -0.25 1.31 16 19 F -0.12 -1.73 16.98 2.25 0.04 -1.70 16 20 C -0.18 -2.30 10.00 -39.56 -0.40 -2.70 16 21 C 0.11 1.45 7.29 -39.53 -0.29 1.16 16 22 F -0.13 -1.80 17.27 2.25 0.04 -1.77 16 23 C -0.14 -1.75 9.45 -39.37 -0.37 -2.12 16 24 C -0.05 -0.64 3.69 -104.67 -0.39 -1.03 16 25 C -0.01 -0.14 2.71 -92.32 -0.25 -0.39 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 C -0.16 -2.03 7.52 -35.80 -0.27 -2.30 16 28 C -0.14 -1.71 7.18 -35.58 -0.26 -1.97 16 29 C -0.09 -0.82 5.83 -26.13 -0.15 -0.98 16 30 C -0.12 -1.15 3.86 -88.55 -0.34 -1.49 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 C -0.07 -1.23 6.72 -39.61 -0.27 -1.49 16 33 C -0.22 -4.72 9.17 -39.39 -0.36 -5.09 16 34 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.11 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.11 1.36 6.31 -52.49 -0.33 1.03 16 37 H 0.36 3.18 8.84 -39.29 -0.35 2.84 16 38 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.14 1.50 8.05 -52.49 -0.42 1.07 16 40 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.13 1.66 7.94 -52.48 -0.42 1.24 16 42 H 0.08 0.67 5.98 -51.93 -0.31 0.36 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 2.13 3.21 -53.15 -0.17 1.95 16 45 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -30.31 356.42 -8.70 -39.01 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.67 Total: 8.65 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -5.07 Total: -28.21 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.46 Total: -32.52 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.78 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.46 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.31 -8.70 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409160289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.495 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds