Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47339 * 60.00387 * 9 7 5 11 11 H 1.48505 * 109.47064 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47330 * 299.99677 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 18 18 N 1.46499 * 109.47257 * 180.27849 * 16 14 13 19 19 C 1.34774 * 120.00436 * 205.00106 * 18 16 14 20 20 O 1.21513 * 119.99574 * 359.97438 * 19 18 16 21 21 O 1.34640 * 120.00333 * 179.97438 * 19 18 16 22 22 C 1.45196 * 116.99810 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47482 * 60.00162 * 22 21 19 24 24 C 1.53005 * 109.47094 * 180.02562 * 22 21 19 25 25 C 1.53005 * 109.47165 * 299.99807 * 22 21 19 26 26 C 1.50702 * 109.47327 * 300.27550 * 16 14 13 27 27 C 1.33642 * 122.75098 * 124.99579 * 26 16 14 28 28 S 1.76194 * 107.92467 * 180.02562 * 27 26 16 29 29 C 1.70975 * 90.28361 * 0.02562 * 28 27 26 30 30 N 1.29025 * 110.16682 * 359.73670 * 29 28 27 31 31 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 32 32 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 34 34 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 35 35 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 36 36 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 37 37 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 38 38 H 0.97002 * 120.00224 * 24.99714 * 18 16 14 39 39 H 1.08994 * 109.46965 * 59.99500 * 23 22 21 40 40 H 1.08990 * 109.47329 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.46673 * 300.00322 * 23 22 21 42 42 H 1.09005 * 109.46857 * 59.99962 * 24 22 21 43 43 H 1.08990 * 109.47294 * 179.97438 * 24 22 21 44 44 H 1.08994 * 109.46855 * 300.00194 * 24 22 21 45 45 H 1.08996 * 109.46766 * 60.00520 * 25 22 21 46 46 H 1.09003 * 109.46767 * 180.02562 * 25 22 21 47 47 H 1.08996 * 109.47329 * 300.00336 * 25 22 21 48 48 H 1.08003 * 126.03448 * 0.02562 * 27 26 16 49 49 H 1.08005 * 124.91721 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5966 0.1455 -0.2343 11 1 6.3979 0.2169 -2.6503 12 1 6.5003 2.2802 -1.3809 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 1 0.7223 4.1501 2.8717 18 7 -1.3267 3.8607 2.5306 19 6 -1.7226 4.8943 3.2996 20 8 -0.9508 5.3880 4.0979 21 8 -2.9730 5.3798 3.1834 22 6 -3.3303 6.4934 4.0439 23 6 -2.4021 7.6760 3.7596 24 6 -4.7787 6.9043 3.7713 25 6 -3.1869 6.0731 5.5080 26 6 0.0809 2.3280 3.7789 27 6 0.7942 2.5208 4.8925 28 16 0.5708 1.1142 5.9298 29 6 -0.4589 0.4065 4.7627 30 7 -0.5812 1.1892 3.7443 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 3.8292 -0.0604 -2.9502 37 1 2.2718 2.1233 1.9978 38 1 -1.9429 3.4665 1.8935 39 1 -2.5042 7.9754 2.7165 40 1 -2.6706 8.5121 4.4051 41 1 -1.3703 7.3830 3.9540 42 1 -5.4397 6.0617 3.9742 43 1 -5.0471 7.7400 4.4175 44 1 -4.8812 7.2036 2.7282 45 1 -2.1552 5.7802 5.7026 46 1 -3.4556 6.9090 6.1540 47 1 -3.8482 5.2307 5.7106 48 1 1.4005 3.3860 5.1169 49 1 -0.9412 -0.5544 4.8653 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495989548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = -72.295937 kcal Electronic energy + Delta-G solvation = -32760.105975 eV Core-core repulsion = 28428.594263 eV Total energy + Delta-G solvation = -4331.511713 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02248 -40.13244 -38.78626 -37.30860 -35.31851 -34.51725 -33.95165 -32.50064 -31.25623 -30.52439 -27.92264 -27.59159 -27.53641 -26.58243 -24.97512 -23.12548 -22.34743 -20.89840 -20.15985 -19.69808 -19.38814 -18.56138 -18.12696 -17.12448 -16.50772 -16.32102 -15.86614 -15.72104 -15.53614 -14.94496 -14.72084 -14.54392 -14.42573 -14.16306 -13.93995 -13.54943 -13.45065 -13.29585 -12.73617 -12.67400 -12.61753 -12.37411 -12.06512 -12.04764 -11.92827 -11.77417 -11.56344 -11.45819 -11.42153 -11.23997 -11.00956 -10.82554 -10.48138 -10.34615 -10.19253 -10.11746 -9.72273 -9.66434 -9.51949 -9.49044 -9.12735 -9.06450 -8.82937 -8.50939 -7.89351 -6.13633 -4.23362 0.65973 1.31844 1.63144 2.02931 2.73818 2.83867 3.23421 3.25059 3.30195 3.31200 3.85913 4.10674 4.25651 4.36460 4.54444 4.58967 4.72990 4.93206 5.08935 5.18009 5.25729 5.27315 5.33386 5.35191 5.39558 5.49910 5.53432 5.61860 5.68728 5.79603 5.94902 6.04626 6.12665 6.28108 6.43692 6.49533 6.53471 6.71089 7.09753 7.21114 7.33025 7.41430 7.46827 7.60153 7.67793 7.70690 7.87666 8.16602 8.36455 8.56718 8.72036 8.99366 9.43376 10.91508 Molecular weight = 369.16amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.002869 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.514528 B = 9757.240225 C =10888.152632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.273 3.727 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.695 5.695 14 C 0.512 3.488 15 O -0.534 6.534 16 C 0.221 3.779 17 H 0.126 0.874 18 N -0.680 5.680 19 C 0.657 3.343 20 O -0.572 6.572 21 O -0.361 6.361 22 C 0.136 3.864 23 C -0.184 4.184 24 C -0.141 4.141 25 C -0.182 4.182 26 C 0.050 3.950 27 C -0.222 4.222 28 S 0.116 5.884 29 C 0.023 3.977 30 N -0.444 5.444 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.388 0.612 38 H 0.419 0.581 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.182 0.818 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 7.441 17.640 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.172 3.828 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.342 5.342 14 C 0.294 3.706 15 O -0.412 6.412 16 C 0.109 3.891 17 H 0.143 0.857 18 N -0.340 5.340 19 C 0.410 3.590 20 O -0.461 6.461 21 O -0.276 6.276 22 C 0.099 3.901 23 C -0.241 4.241 24 C -0.198 4.198 25 C -0.239 4.239 26 C -0.083 4.083 27 C -0.362 4.362 28 S 0.369 5.631 29 C -0.276 4.276 30 N -0.157 5.157 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.257 0.743 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.200 0.800 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.388 7.101 17.682 22.199 hybrid contribution 0.997 0.290 -0.569 1.184 sum -10.391 7.391 17.113 21.341 Atomic orbital electron populations 1.21857 0.98109 0.98143 1.01590 1.21896 0.92835 0.99502 1.02072 1.18838 0.94227 0.89273 0.80448 0.93142 1.21178 0.90613 1.39285 1.06363 0.92133 1.24869 0.98573 0.94752 0.95359 1.69887 1.35218 1.37421 1.09292 0.86521 0.84869 0.78338 0.77455 1.20173 1.21131 1.20156 1.46368 1.13997 1.55068 1.18748 1.19714 0.83535 0.79778 0.87552 1.90690 1.51213 1.59521 1.39755 1.19223 0.84301 0.94033 0.91521 0.85676 1.44243 1.14442 1.33213 1.42083 1.17926 0.80944 0.79888 0.80232 1.90864 1.54448 1.61717 1.39119 1.86325 1.29941 1.49326 1.62002 1.22057 0.95348 0.83608 0.89069 1.22519 1.02316 0.97039 1.02217 1.21859 0.92912 1.01917 1.03117 1.22508 1.05013 1.01981 0.94448 1.20196 0.97882 0.93879 0.96390 1.26937 1.08053 1.03832 0.97416 1.83970 1.44228 1.11678 1.23263 1.28395 1.02379 1.04242 0.92609 1.66045 1.21274 1.03029 1.25321 0.93419 0.96081 0.93235 0.88404 0.95238 0.92480 0.77954 0.74261 0.92066 0.91279 0.89233 0.91505 0.90228 0.91365 0.89310 0.91275 0.92322 0.80046 0.78426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.82 16 2 C -0.12 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.69 -14.05 4.92 -54.93 -0.27 -14.33 16 14 C 0.51 9.87 5.68 -10.98 -0.06 9.81 16 15 O -0.53 -11.83 12.97 5.55 0.07 -11.76 16 16 C 0.22 3.46 2.79 -70.23 -0.20 3.26 16 17 H 0.13 1.82 7.46 -51.93 -0.39 1.44 16 18 N -0.68 -10.50 4.94 -61.01 -0.30 -10.80 16 19 C 0.66 9.79 8.01 54.05 0.43 10.23 16 20 O -0.57 -8.80 11.54 -19.28 -0.22 -9.02 16 21 O -0.36 -4.92 9.94 -40.32 -0.40 -5.32 16 22 C 0.14 1.46 1.13 -90.62 -0.10 1.35 16 23 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 24 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 25 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 26 C 0.05 0.73 5.40 -84.22 -0.45 0.27 16 27 C -0.22 -2.68 11.07 29.12 0.32 -2.36 16 28 S 0.12 1.16 23.22 -107.50 -2.50 -1.33 16 29 C 0.02 0.27 12.23 51.58 0.63 0.90 16 30 N -0.44 -6.65 10.39 -11.89 -0.12 -6.78 16 31 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.09 5.64 -51.93 -0.29 0.80 16 34 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.39 7.02 8.42 -40.82 -0.34 6.68 16 38 H 0.42 6.69 7.90 -40.82 -0.32 6.37 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.18 1.86 8.06 -52.48 -0.42 1.44 16 49 H 0.20 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 410.23 15.07 6.18 6.18 Total: -1.00 -30.84 410.23 -8.07 -38.91 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -7.26 Total: 14.97 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 1.14 Total: 7.67 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.07 Total: -55.66 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.55 Total: -26.10 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.50 Total: -1.33 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.84 -8.07 -38.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495989548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.387 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds