Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.08995 * 109.47634 * 300.00249 * 16 14 13 18 18 N 1.46499 * 109.47347 * 179.97438 * 16 14 13 19 19 C 1.34771 * 120.00258 * 155.00156 * 18 16 14 20 20 O 1.21504 * 119.99998 * 0.02562 * 19 18 16 21 21 O 1.34641 * 120.00282 * 180.02562 * 19 18 16 22 22 C 1.45200 * 117.00369 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.46589 * 60.00088 * 22 21 19 24 24 C 1.52999 * 109.47423 * 180.02562 * 22 21 19 25 25 C 1.53004 * 109.47280 * 300.00675 * 22 21 19 26 26 C 1.50707 * 109.46930 * 60.00413 * 16 14 13 27 27 C 1.33641 * 122.74773 * 124.73293 * 26 16 14 28 28 S 1.76202 * 107.92052 * 179.97438 * 27 26 16 29 29 C 1.70973 * 90.28286 * 0.27147 * 28 27 26 30 30 N 1.29032 * 110.16897 * 359.84336 * 29 28 27 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 37 37 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 38 38 H 0.97006 * 120.00052 * 335.00761 * 18 16 14 39 39 H 1.08998 * 109.47358 * 60.00034 * 23 22 21 40 40 H 1.09006 * 109.47028 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47378 * 300.00039 * 23 22 21 42 42 H 1.09001 * 109.47034 * 60.00367 * 24 22 21 43 43 H 1.08997 * 109.47331 * 180.02562 * 24 22 21 44 44 H 1.08998 * 109.46744 * 300.00729 * 24 22 21 45 45 H 1.08997 * 109.47362 * 59.99547 * 25 22 21 46 46 H 1.08997 * 109.47123 * 179.97438 * 25 22 21 47 47 H 1.09001 * 109.46885 * 299.99454 * 25 22 21 48 48 H 1.08001 * 126.03947 * 0.03322 * 27 26 16 49 49 H 1.08003 * 124.91412 * 179.84090 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.0673 2.6129 3.4685 18 7 -1.3222 3.8709 2.5269 19 6 -2.0804 4.0545 3.6259 20 8 -1.6371 3.7782 4.7229 21 8 -3.3290 4.5442 3.5082 22 6 -4.0883 4.7154 4.7339 23 6 -3.3515 5.6863 5.6588 24 6 -5.4723 5.2771 4.4024 25 6 -4.2413 3.3626 5.4323 26 6 0.9922 4.4648 2.9495 27 6 0.5866 5.7214 3.1555 28 16 2.0136 6.7081 3.4632 29 6 3.0142 5.3344 3.2764 30 7 2.2969 4.2933 3.0188 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.8292 -0.0609 -2.9500 37 1 2.2719 2.1231 1.9979 38 1 -1.6760 4.0917 1.6511 39 1 -3.2424 6.6500 5.1613 40 1 -3.9217 5.8152 6.5788 41 1 -2.3657 5.2857 5.8949 42 1 -5.9971 4.5850 3.7437 43 1 -6.0421 5.4060 5.3226 44 1 -5.3636 6.2407 3.9047 45 1 -3.2555 2.9621 5.6684 46 1 -4.8109 3.4912 6.3526 47 1 -4.7662 2.6709 4.7734 48 1 -0.4353 6.0702 3.1376 49 1 4.0909 5.3377 3.3616 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495989549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -68.211431 kcal Electronic energy + Delta-G solvation = -32768.393159 eV Core-core repulsion = 28437.058564 eV Total energy + Delta-G solvation = -4331.334595 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14532 -40.14784 -38.77221 -37.41121 -35.36605 -34.60255 -34.03062 -32.41742 -31.10691 -30.37469 -28.16950 -27.63693 -27.57720 -26.57465 -24.95461 -23.12047 -22.34502 -20.89425 -20.21985 -19.59574 -19.30245 -18.55837 -18.41683 -17.03321 -16.68535 -16.31313 -16.01594 -15.52673 -15.26052 -15.23886 -14.62718 -14.55998 -14.52348 -14.27254 -13.97916 -13.61292 -13.34012 -13.21582 -12.83932 -12.70839 -12.66339 -12.43709 -12.11544 -12.09759 -11.94763 -11.75886 -11.60921 -11.51102 -11.35032 -11.23839 -10.98058 -10.80881 -10.54551 -10.32501 -10.21516 -10.14639 -9.72972 -9.66066 -9.59260 -9.50085 -9.27630 -9.02629 -8.70354 -8.48107 -7.82763 -6.10212 -4.18463 0.70020 1.33374 1.65327 1.93662 2.69894 2.71566 3.24896 3.26509 3.32785 3.35085 3.83014 4.06050 4.34445 4.38431 4.49492 4.54047 4.68053 4.92269 5.14865 5.20531 5.21515 5.23253 5.27461 5.31428 5.45214 5.46498 5.56215 5.63245 5.64458 5.75663 5.92712 6.00302 6.08627 6.21934 6.39866 6.41257 6.45881 6.65817 7.04782 7.18861 7.32974 7.36753 7.43309 7.63668 7.65345 7.75079 7.91274 8.18849 8.27806 8.64392 8.77944 9.07488 9.47926 10.95314 Molecular weight = 369.16amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.002955 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.316300 B = 9473.599211 C =11340.478703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.529 4.529 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.507 3.493 15 O -0.544 6.544 16 C 0.219 3.781 17 H 0.129 0.871 18 N -0.687 5.687 19 C 0.654 3.346 20 O -0.564 6.564 21 O -0.361 6.361 22 C 0.136 3.864 23 C -0.184 4.184 24 C -0.141 4.141 25 C -0.185 4.185 26 C 0.060 3.940 27 C -0.234 4.234 28 S 0.114 5.886 29 C 0.036 3.964 30 N -0.452 5.452 31 H 0.037 0.963 32 H 0.023 0.977 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.264 0.736 37 H 0.400 0.600 38 H 0.420 0.580 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.170 0.830 49 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.899 12.489 15.067 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.331 5.331 14 C 0.288 3.712 15 O -0.424 6.424 16 C 0.108 3.892 17 H 0.146 0.854 18 N -0.348 5.348 19 C 0.407 3.593 20 O -0.453 6.453 21 O -0.276 6.276 22 C 0.099 3.901 23 C -0.241 4.241 24 C -0.198 4.198 25 C -0.242 4.242 26 C -0.073 4.073 27 C -0.373 4.373 28 S 0.366 5.634 29 C -0.263 4.263 30 N -0.165 5.165 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.235 0.765 38 H 0.258 0.742 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.187 0.813 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.782 12.773 14.914 22.402 hybrid contribution 0.589 -0.560 -0.247 0.849 sum -10.193 12.213 14.667 21.638 Atomic orbital electron populations 1.21838 0.98364 0.98117 1.01110 1.21952 0.92584 0.99756 1.02454 1.18838 0.94399 0.89096 0.80648 0.93342 1.21230 0.90599 1.38685 1.06207 0.91858 1.24873 0.98522 0.94902 0.95396 1.69889 1.35063 1.37807 1.09392 0.86462 0.85011 0.78457 0.77256 1.20563 1.21186 1.19870 1.46438 1.13687 1.53852 1.19081 1.19708 0.83885 0.80098 0.87499 1.90687 1.51534 1.60697 1.39441 1.19014 0.78118 0.92181 0.99929 0.85400 1.44224 1.13187 1.68182 1.09183 1.17941 0.80222 0.76823 0.84278 1.90910 1.73643 1.55704 1.25016 1.86325 1.25090 1.77922 1.38256 1.22081 0.90295 0.96317 0.81386 1.22526 1.03355 0.98885 0.99338 1.21861 0.93272 1.01841 1.02824 1.22526 1.04872 0.96079 1.00697 1.20205 0.90309 0.94105 1.02699 1.26577 1.03272 0.96200 1.11289 1.83910 0.98312 1.15758 1.65445 1.28394 1.04920 0.90250 1.02755 1.65872 1.04189 1.31708 1.14776 0.94435 0.95786 0.93124 0.94887 0.88161 0.92627 0.76473 0.74184 0.92241 0.91165 0.89249 0.91339 0.90174 0.91473 0.89254 0.91201 0.92019 0.81258 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.96 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.68 -14.32 4.72 -54.94 -0.26 -14.58 16 14 C 0.51 9.90 5.78 -10.99 -0.06 9.83 16 15 O -0.54 -11.90 12.97 5.56 0.07 -11.83 16 16 C 0.22 3.50 2.92 -70.23 -0.20 3.30 16 17 H 0.13 2.04 7.58 -51.93 -0.39 1.65 16 18 N -0.69 -9.90 4.12 -61.01 -0.25 -10.15 16 19 C 0.65 9.15 7.01 54.05 0.38 9.53 16 20 O -0.56 -8.63 11.54 -19.27 -0.22 -8.85 16 21 O -0.36 -4.51 9.94 -40.33 -0.40 -4.91 16 22 C 0.14 1.36 1.13 -90.62 -0.10 1.26 16 23 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 24 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 25 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 26 C 0.06 0.91 6.05 -84.22 -0.51 0.40 16 27 C -0.23 -3.07 10.27 29.12 0.30 -2.77 16 28 S 0.11 1.20 23.22 -107.50 -2.50 -1.29 16 29 C 0.04 0.43 12.23 51.59 0.63 1.06 16 30 N -0.45 -6.89 8.93 -11.89 -0.11 -6.99 16 31 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.40 7.92 7.26 -40.82 -0.30 7.62 16 38 H 0.42 6.00 7.90 -40.82 -0.32 5.68 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.17 2.07 6.94 -52.49 -0.36 1.71 16 49 H 0.20 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -30.44 404.64 -8.12 -38.56 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -7.16 Total: 15.25 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 1.00 Total: 7.08 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.01 Total: -55.68 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.55 Total: -25.59 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.50 Total: -1.29 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.44 -8.12 -38.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495989549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.655 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds