Wall clock time and date at job start Tue Mar 31 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48497 * 109.47526 * 274.97768 * 3 2 1 5 5 H 1.48503 * 109.47268 * 34.98329 * 3 2 1 6 6 H 1.48507 * 109.47230 * 154.97974 * 3 2 1 7 7 C 1.39922 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00219 * 146.41148 * 7 2 1 9 9 C 1.41204 * 119.99535 * 326.41890 * 7 2 1 10 10 C 1.40833 * 120.17853 * 156.68868 * 9 7 2 11 11 C 1.36436 * 119.80881 * 180.02562 * 10 9 7 12 12 C 1.39306 * 120.18903 * 359.97438 * 11 10 9 13 13 O 1.35700 * 119.81730 * 179.97438 * 12 11 10 14 14 C 1.34759 * 116.99701 * 75.85791 * 13 12 11 15 15 O 1.21490 * 120.00053 * 356.24851 * 14 13 12 16 16 C 1.47616 * 119.99970 * 176.24415 * 14 13 12 17 17 C 1.39813 * 120.58035 * 270.00503 * 16 14 13 18 18 Cl 1.73605 * 119.74015 * 359.97438 * 17 16 14 19 19 N 1.31783 * 120.51803 * 179.97438 * 17 16 14 20 20 C 1.31950 * 121.86364 * 0.02562 * 19 17 16 21 21 C 1.38315 * 121.12686 * 359.97438 * 20 19 17 22 22 C 1.38380 * 119.35066 * 359.76409 * 21 20 19 23 23 C 1.50692 * 120.85664 * 180.27435 * 22 21 20 24 24 F 1.39908 * 109.47245 * 0.20503 * 23 22 21 25 25 F 1.39904 * 109.47043 * 120.20426 * 23 22 21 26 26 F 1.39898 * 109.47425 * 240.20400 * 23 22 21 27 27 C 1.39296 * 120.36566 * 0.25921 * 12 11 10 28 28 C 1.36449 * 120.18711 * 359.48177 * 27 12 11 29 29 H 0.96999 * 120.00104 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.09467 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.90592 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.43757 * 180.02562 * 20 19 17 33 33 H 1.07998 * 120.33183 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.91231 * 179.74316 * 27 12 11 35 35 H 1.07997 * 120.09715 * 180.26403 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4965 2.6200 0.8027 6 1 3.5888 1.4122 0.5922 7 6 2.0082 -1.2117 -0.0005 8 1 2.9530 -1.2895 -0.5180 9 6 1.4789 -2.3328 0.6754 10 6 1.8703 -3.6335 0.3034 11 6 1.3538 -4.7114 0.9613 12 6 0.4421 -4.5281 1.9986 13 8 -0.0673 -5.6056 2.6474 14 6 0.7391 -6.2245 3.5321 15 8 1.8883 -5.8548 3.6686 16 6 0.2261 -7.3517 4.3354 17 6 -0.3706 -7.1252 5.5794 18 17 -0.5091 -5.5043 6.1856 19 7 -0.8286 -8.1323 6.2952 20 6 -0.7447 -9.3804 5.8753 21 6 -0.1684 -9.6873 4.6560 22 6 0.3237 -8.6662 3.8622 23 6 0.9527 -8.9615 2.5250 24 9 0.9258 -10.3406 2.2912 25 9 0.2381 -8.3037 1.5181 26 9 2.2783 -8.5142 2.5242 27 6 0.0461 -3.2452 2.3695 28 6 0.5571 -2.1563 1.7254 29 1 -0.4850 0.8400 0.0004 30 1 2.5766 -3.7773 -0.5008 31 1 1.6525 -5.7097 0.6770 32 1 -1.1334 -10.1758 6.4939 33 1 -0.1068 -10.7134 4.3247 34 1 -0.6642 -3.1118 3.1720 35 1 0.2523 -1.1621 2.0170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000163270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:32 Heat of formation + Delta-G solvation = -165.368693 kcal Electronic energy + Delta-G solvation = -30943.360547 eV Core-core repulsion = 25904.117856 eV Total energy + Delta-G solvation = -5039.242690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 371.032 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.44730 -47.99366 -47.83317 -41.21487 -40.04553 -37.53163 -37.08944 -36.06962 -34.12177 -33.66340 -32.04274 -29.81954 -29.45741 -27.50502 -25.95964 -24.78025 -23.22423 -22.26107 -21.23293 -20.39469 -19.17801 -18.98609 -18.72893 -17.94730 -17.53816 -17.25561 -17.08454 -16.29485 -15.53587 -15.38874 -15.13270 -15.09838 -14.66189 -14.59664 -14.32395 -14.27653 -14.00170 -13.98726 -13.94250 -13.47279 -13.09641 -12.79106 -12.69033 -12.26103 -12.21006 -12.10037 -11.71798 -11.62209 -11.34342 -11.02253 -10.92332 -10.83614 -10.70930 -10.51052 -10.21476 -10.04832 -9.60449 -9.40097 -9.11778 -7.74837 -7.57591 -7.12455 -4.50418 -0.03911 0.10923 1.25095 2.11528 2.15204 2.29714 2.73864 2.86620 2.94064 2.97344 3.03331 3.18692 3.27650 3.48200 3.76339 3.92730 4.02652 4.14948 4.24012 4.38585 4.44575 4.76363 5.02930 5.21854 5.50340 5.57825 6.07688 6.13354 6.62562 6.79941 6.87296 6.92669 6.97742 7.07796 7.38960 7.48521 7.76592 7.83004 7.99438 8.25462 8.44619 8.62749 8.80243 9.81772 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.002906 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.686730 B = 9634.297138 C =10972.005476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.088 3.912 3 Si 0.899 3.101 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.453 4.453 8 H 0.088 0.912 9 C 0.123 3.877 10 C -0.223 4.223 11 C -0.062 4.062 12 C -0.095 4.095 13 O -0.254 6.254 14 C 0.470 3.530 15 O -0.455 6.455 16 C -0.081 4.081 17 C 0.208 3.792 18 Cl 0.013 6.987 19 N -0.450 5.450 20 C 0.136 3.864 21 C -0.123 4.123 22 C -0.097 4.097 23 C 0.505 3.495 24 F -0.169 7.169 25 F -0.155 7.155 26 F -0.159 7.159 27 C -0.071 4.071 28 C -0.177 4.177 29 H 0.288 0.712 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.187 0.813 33 H 0.168 0.832 34 H 0.096 0.904 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -16.461 9.191 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.479 4.479 8 H 0.106 0.894 9 C 0.120 3.880 10 C -0.242 4.242 11 C -0.080 4.080 12 C -0.137 4.137 13 O -0.167 6.167 14 C 0.311 3.689 15 O -0.340 6.340 16 C -0.085 4.085 17 C 0.043 3.957 18 Cl 0.042 6.958 19 N -0.160 5.160 20 C -0.021 4.021 21 C -0.143 4.143 22 C -0.106 4.106 23 C 0.450 3.550 24 F -0.150 7.150 25 F -0.137 7.137 26 F -0.140 7.140 27 C -0.090 4.090 28 C -0.196 4.196 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.185 0.815 34 H 0.114 0.886 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.331 -15.850 9.999 19.034 hybrid contribution 0.782 0.637 -0.908 1.357 sum -2.550 -15.212 9.092 17.905 Atomic orbital electron populations 1.69927 1.08266 1.30529 1.28815 1.26038 0.94419 1.01893 0.91336 0.86441 0.81592 0.80320 0.79440 1.19202 1.19640 1.17827 1.19640 1.05985 0.93874 1.28435 0.89431 1.17642 0.88919 0.91863 0.89533 1.20517 1.07388 0.92105 1.04206 1.20348 0.94968 0.97679 0.95053 1.17914 1.11361 0.83667 1.00709 1.84889 1.42445 1.40956 1.48399 1.21508 0.85664 0.82352 0.79380 1.90906 1.17685 1.62199 1.63207 1.19845 1.00727 0.92828 0.95146 1.21623 0.94615 0.90226 0.89197 1.98490 1.95850 1.13829 1.87631 1.67212 1.15657 0.99592 1.33522 1.23017 0.93414 0.92509 0.93164 1.22128 0.96773 1.00551 0.94868 1.20477 1.01333 0.93673 0.95151 1.18010 0.77371 0.74797 0.84805 1.93195 1.96345 1.30331 1.95159 1.93353 1.77670 1.80471 1.62157 1.93335 1.35163 1.88836 1.96671 1.20297 0.98721 0.91095 0.98882 1.20643 1.03118 0.96618 0.99204 0.90087 0.88116 0.89064 0.79626 0.81453 0.88613 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.36 11.96 55.55 0.66 -17.69 16 2 C 0.09 2.07 4.72 -17.34 -0.08 1.99 16 3 Si 0.90 17.45 29.67 -169.99 -5.04 12.40 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 6 H -0.25 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.50 8.93 -37.83 -0.34 -11.84 16 8 H 0.09 2.13 8.02 -52.49 -0.42 1.71 16 9 C 0.12 3.22 5.56 -106.81 -0.59 2.63 16 10 C -0.22 -5.53 9.74 -39.25 -0.38 -5.91 16 11 C -0.06 -1.48 9.46 -39.83 -0.38 -1.86 16 12 C -0.10 -2.27 5.19 -38.79 -0.20 -2.47 16 13 O -0.25 -5.43 9.85 -24.23 -0.24 -5.67 16 14 C 0.47 9.24 4.50 34.56 0.16 9.40 16 15 O -0.46 -10.17 16.40 -19.26 -0.32 -10.49 16 16 C -0.08 -1.25 5.75 -104.80 -0.60 -1.86 16 17 C 0.21 2.94 7.32 -16.98 -0.12 2.81 16 18 Cl 0.01 0.19 28.20 -51.86 -1.46 -1.27 16 19 N -0.45 -5.14 10.33 -10.00 -0.10 -5.24 16 20 C 0.14 1.03 11.17 -17.47 -0.20 0.83 16 21 C -0.12 -0.99 9.49 -39.50 -0.37 -1.36 16 22 C -0.10 -1.21 5.43 -103.89 -0.56 -1.77 16 23 C 0.50 6.77 2.91 36.00 0.10 6.87 16 24 F -0.17 -1.80 16.08 2.25 0.04 -1.77 16 25 F -0.16 -2.40 16.47 2.25 0.04 -2.37 16 26 F -0.16 -2.48 16.45 2.25 0.04 -2.44 16 27 C -0.07 -1.71 9.92 -39.83 -0.40 -2.11 16 28 C -0.18 -4.50 8.76 -39.25 -0.34 -4.85 16 29 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 30 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.09 2.04 8.06 -52.48 -0.42 1.61 16 32 H 0.19 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.17 0.74 7.26 -52.49 -0.38 0.36 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.11 2.78 6.66 -52.49 -0.35 2.43 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -29.63 348.02 -7.43 -37.06 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -1.98 Total: 1.71 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -4.31 Total: -9.49 kcal Atomic # 7 Polarization: -23.49 SS G_CDS: 0.56 Total: -22.93 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.55 Total: -16.16 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.04 Total: 12.40 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.46 Total: -1.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.63 -7.43 -37.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000163270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.305 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds