Wall clock time and date at job start Tue Mar 31 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86803 * 119.99822 * 2 1 4 4 H 1.48497 * 109.47526 * 274.97768 * 3 2 1 5 5 H 1.48503 * 109.47268 * 34.98329 * 3 2 1 6 6 H 1.48507 * 109.47230 * 154.97974 * 3 2 1 7 7 C 1.39922 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00219 * 146.41148 * 7 2 1 9 9 C 1.41204 * 119.99535 * 326.41890 * 7 2 1 10 10 C 1.40833 * 120.17853 * 156.68868 * 9 7 2 11 11 C 1.36436 * 119.80881 * 180.02562 * 10 9 7 12 12 C 1.39306 * 120.18903 * 359.97438 * 11 10 9 13 13 O 1.35700 * 119.81730 * 179.97438 * 12 11 10 14 14 C 1.34759 * 116.99701 * 75.85791 * 13 12 11 15 15 O 1.21490 * 120.00053 * 356.24851 * 14 13 12 16 16 C 1.47616 * 119.99970 * 176.24415 * 14 13 12 17 17 C 1.39813 * 120.58035 * 270.00503 * 16 14 13 18 18 Cl 1.73605 * 119.74015 * 359.97438 * 17 16 14 19 19 N 1.31783 * 120.51803 * 179.97438 * 17 16 14 20 20 C 1.31950 * 121.86364 * 0.02562 * 19 17 16 21 21 C 1.38315 * 121.12686 * 359.97438 * 20 19 17 22 22 C 1.38380 * 119.35066 * 359.76409 * 21 20 19 23 23 C 1.50692 * 120.85664 * 180.27435 * 22 21 20 24 24 F 1.39908 * 109.47245 * 0.20503 * 23 22 21 25 25 F 1.39904 * 109.47043 * 120.20426 * 23 22 21 26 26 F 1.39898 * 109.47425 * 240.20400 * 23 22 21 27 27 C 1.39296 * 120.36566 * 0.25921 * 12 11 10 28 28 C 1.36449 * 120.18711 * 359.48177 * 27 12 11 29 29 H 0.96999 * 120.00104 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.09467 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.90592 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.43757 * 180.02562 * 20 19 17 33 33 H 1.07998 * 120.33183 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.91231 * 179.74316 * 27 12 11 35 35 H 1.07997 * 120.09715 * 180.26403 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4965 2.6200 0.8027 6 1 3.5888 1.4122 0.5922 7 6 2.0082 -1.2117 -0.0005 8 1 2.9530 -1.2895 -0.5180 9 6 1.4789 -2.3328 0.6754 10 6 1.8703 -3.6335 0.3034 11 6 1.3538 -4.7114 0.9613 12 6 0.4421 -4.5281 1.9986 13 8 -0.0673 -5.6056 2.6474 14 6 0.7391 -6.2245 3.5321 15 8 1.8883 -5.8548 3.6686 16 6 0.2261 -7.3517 4.3354 17 6 -0.3706 -7.1252 5.5794 18 17 -0.5091 -5.5043 6.1856 19 7 -0.8286 -8.1323 6.2952 20 6 -0.7447 -9.3804 5.8753 21 6 -0.1684 -9.6873 4.6560 22 6 0.3237 -8.6662 3.8622 23 6 0.9527 -8.9615 2.5250 24 9 0.9258 -10.3406 2.2912 25 9 0.2381 -8.3037 1.5181 26 9 2.2783 -8.5142 2.5242 27 6 0.0461 -3.2452 2.3695 28 6 0.5571 -2.1563 1.7254 29 1 -0.4850 0.8400 0.0004 30 1 2.5766 -3.7773 -0.5008 31 1 1.6525 -5.7097 0.6770 32 1 -1.1334 -10.1758 6.4939 33 1 -0.1068 -10.7134 4.3247 34 1 -0.6642 -3.1118 3.1720 35 1 0.2523 -1.1621 2.0170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000163270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:31 Heat of formation + Delta-G solvation = -180.289862 kcal Electronic energy + Delta-G solvation = -30944.007577 eV Core-core repulsion = 25904.117856 eV Total energy + Delta-G solvation = -5039.889721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 371.032 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.50670 -48.99910 -48.97689 -42.44122 -41.39632 -39.32580 -38.14119 -37.79994 -35.53431 -35.04370 -33.00571 -31.72762 -31.32882 -28.53999 -27.48512 -26.14489 -24.23298 -23.78138 -23.09815 -22.06299 -20.23738 -20.01155 -19.82065 -19.46876 -19.33579 -18.73484 -18.19130 -17.31761 -17.22910 -16.80509 -16.41214 -16.03767 -15.93745 -15.74793 -15.67995 -15.39447 -15.36242 -15.17183 -15.08673 -15.02656 -14.62521 -14.16941 -14.13597 -13.83623 -13.65328 -13.55553 -13.21040 -13.06687 -12.72788 -12.65085 -12.59794 -12.39009 -12.11400 -11.85308 -11.76808 -11.27492 -11.23725 -10.94809 -10.52885 -9.69442 -9.49344 -8.92905 -6.43268 -0.97263 -0.75220 0.23885 0.51705 0.67652 0.97891 1.12532 1.32834 1.39520 1.52977 1.68820 1.94841 2.13876 2.22095 2.49322 2.53042 2.95460 3.07315 3.17298 3.33573 3.54104 3.62466 3.83719 3.95850 4.18019 4.23110 4.42074 4.77782 4.93713 4.95771 5.03316 5.09351 5.25715 5.47351 5.67954 5.84271 5.89394 6.08899 6.10487 6.39065 6.61825 6.71542 6.92394 8.05971 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.002906 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.686730 B = 9634.297138 C =10972.005476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.052 3.948 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.089 0.911 9 C 0.097 3.903 10 C -0.238 4.238 11 C -0.069 4.069 12 C -0.097 4.097 13 O -0.261 6.261 14 C 0.480 3.520 15 O -0.491 6.491 16 C -0.115 4.115 17 C 0.199 3.801 18 Cl -0.009 7.009 19 N -0.458 5.458 20 C 0.164 3.836 21 C -0.092 4.092 22 C -0.107 4.107 23 C 0.502 3.498 24 F -0.149 7.149 25 F -0.173 7.173 26 F -0.177 7.177 27 C -0.078 4.078 28 C -0.193 4.193 29 H 0.300 0.700 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.248 0.752 33 H 0.215 0.785 34 H 0.112 0.888 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -18.813 10.568 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.171 4.171 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.510 4.510 8 H 0.107 0.893 9 C 0.094 3.906 10 C -0.258 4.258 11 C -0.088 4.088 12 C -0.139 4.139 13 O -0.174 6.174 14 C 0.323 3.677 15 O -0.378 6.378 16 C -0.120 4.120 17 C 0.037 3.963 18 Cl 0.020 6.980 19 N -0.168 5.168 20 C 0.006 3.994 21 C -0.112 4.112 22 C -0.116 4.116 23 C 0.448 3.552 24 F -0.130 7.130 25 F -0.154 7.154 26 F -0.159 7.159 27 C -0.096 4.096 28 C -0.212 4.212 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.264 0.736 33 H 0.232 0.768 34 H 0.130 0.870 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.060 -18.208 11.372 21.848 hybrid contribution 0.900 1.043 -1.265 1.870 sum -3.160 -17.165 10.108 20.169 Atomic orbital electron populations 1.69921 1.09686 1.32238 1.28659 1.26875 0.95077 1.04886 0.90235 0.85293 0.79655 0.75548 0.79981 1.17925 1.18512 1.18222 1.19897 1.06445 0.95051 1.29562 0.89347 1.17962 0.89672 0.92717 0.90284 1.20703 1.08097 0.92137 1.04827 1.20511 0.95091 0.98010 0.95150 1.17985 1.10538 0.84361 1.00983 1.84801 1.43042 1.40396 1.49173 1.21944 0.84806 0.82563 0.78423 1.90872 1.19185 1.63526 1.64176 1.19552 1.04394 0.92337 0.95718 1.21501 0.95469 0.90359 0.89020 1.98476 1.96012 1.15739 1.87754 1.67338 1.15768 1.00475 1.33250 1.24148 0.90253 0.92073 0.92935 1.22762 0.93373 1.01355 0.93675 1.20574 1.02304 0.93515 0.95210 1.18182 0.76545 0.75446 0.85067 1.93227 1.96194 1.28465 1.95098 1.93316 1.77959 1.81055 1.63114 1.93298 1.36581 1.89217 1.96754 1.20487 0.98943 0.91072 0.99129 1.20640 1.04068 0.96711 0.99791 0.88874 0.87197 0.88023 0.73643 0.76783 0.86967 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.78 11.96 21.82 0.26 -38.52 16 2 C 0.05 2.47 4.72 85.25 0.40 2.88 16 3 Si 0.98 35.83 29.67 68.60 2.04 37.86 16 4 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 5 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.48 -25.38 8.93 23.41 0.21 -25.17 16 8 H 0.09 4.45 8.02 -2.91 -0.02 4.43 16 9 C 0.10 5.27 5.56 -21.28 -0.12 5.15 16 10 C -0.24 -12.37 9.74 22.48 0.22 -12.15 16 11 C -0.07 -3.45 9.46 22.11 0.21 -3.24 16 12 C -0.10 -4.81 5.19 22.78 0.12 -4.70 16 13 O -0.26 -11.54 9.85 2.08 0.02 -11.52 16 14 C 0.48 19.37 4.50 70.30 0.32 19.69 16 15 O -0.49 -22.84 16.40 19.87 0.33 -22.52 16 16 C -0.12 -3.51 5.75 -19.98 -0.11 -3.62 16 17 C 0.20 5.41 7.32 85.08 0.62 6.03 16 18 Cl -0.01 -0.26 28.20 -2.72 -0.08 -0.34 16 19 N -0.46 -8.95 10.33 -185.54 -1.92 -10.87 16 20 C 0.16 1.52 11.17 84.69 0.95 2.47 16 21 C -0.09 -0.99 9.49 22.32 0.21 -0.78 16 22 C -0.11 -2.43 5.43 -19.39 -0.11 -2.53 16 23 C 0.50 12.84 2.91 71.23 0.21 13.05 16 24 F -0.15 -2.74 16.08 44.97 0.72 -2.01 16 25 F -0.17 -5.35 16.47 44.97 0.74 -4.61 16 26 F -0.18 -5.54 16.45 44.97 0.74 -4.80 16 27 C -0.08 -3.89 9.92 22.11 0.22 -3.67 16 28 C -0.19 -10.28 8.76 22.49 0.20 -10.08 16 29 H 0.30 13.08 8.30 -92.71 -0.77 12.31 16 30 H 0.11 5.30 8.06 -2.91 -0.02 5.28 16 31 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.25 -0.65 8.06 -2.91 -0.02 -0.68 16 33 H 0.22 0.34 7.26 -2.91 -0.02 0.32 16 34 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 35 H 0.10 5.49 6.66 -2.91 -0.02 5.48 16 Total: -1.00 -70.05 348.02 7.59 -62.47 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.19 Total: 11.55 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 3.54 Total: -16.68 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -1.66 Total: -49.39 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: 0.35 Total: -34.03 kcal Atomic # 9 Polarization: -13.64 SS G_CDS: 2.20 Total: -11.43 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.04 Total: 37.86 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -70.05 7.59 -62.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000163270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.824 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds