Wall clock time and date at job start Tue Mar 31 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86801 * 119.99875 * 2 1 4 4 H 1.48499 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46972 * 299.99390 * 3 2 1 6 6 H 1.48498 * 109.47635 * 59.99421 * 3 2 1 7 7 C 1.39904 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00242 * 175.56527 * 7 2 1 9 9 C 1.41154 * 119.99792 * 355.56194 * 7 2 1 10 10 C 1.40872 * 120.16242 * 214.78366 * 9 7 2 11 11 C 1.36368 * 119.82854 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16945 * 359.97438 * 11 10 9 13 13 N 1.39242 * 119.83461 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99689 * 35.29010 * 13 12 11 15 15 O 1.21275 * 120.00411 * 355.70054 * 14 13 12 16 16 C 1.50708 * 119.99522 * 175.71049 * 14 13 12 17 17 S 1.81401 * 109.46909 * 179.97438 * 16 14 13 18 18 C 1.81399 * 103.00054 * 179.97438 * 17 16 14 19 19 C 1.50695 * 109.47374 * 179.97438 * 18 17 16 20 20 C 1.38240 * 119.99898 * 90.00235 * 19 18 17 21 21 C 1.38233 * 120.00052 * 180.02562 * 20 19 18 22 22 C 1.38227 * 119.99945 * 0.02562 * 21 20 19 23 23 N 1.48024 * 120.00208 * 179.97438 * 22 21 20 24 24 O 1.21803 * 119.99812 * 0.02562 * 23 22 21 25 25 O 1.21795 * 120.00259 * 180.02562 * 23 22 21 26 26 C 1.38241 * 120.00375 * 0.25841 * 22 21 20 27 27 C 1.38232 * 120.00454 * 270.02531 * 19 18 17 28 28 C 1.39485 * 120.32886 * 0.25582 * 12 11 10 29 29 C 1.36372 * 120.16980 * 359.48588 * 28 12 11 30 30 H 0.97003 * 120.00475 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.08271 * 359.97438 * 10 9 7 32 32 H 1.07997 * 119.92052 * 179.97438 * 11 10 9 33 33 H 0.97005 * 119.99501 * 215.28604 * 13 12 11 34 34 H 1.09000 * 109.47224 * 59.99503 * 16 14 13 35 35 H 1.08998 * 109.46936 * 299.99568 * 16 14 13 36 36 H 1.09002 * 109.46650 * 60.00169 * 18 17 16 37 37 H 1.09000 * 109.47455 * 300.00558 * 18 17 16 38 38 H 1.08001 * 119.99859 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.99693 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.00209 * 179.72870 * 26 22 21 41 41 H 1.08008 * 119.99548 * 359.97438 * 27 19 18 42 42 H 1.08004 * 119.90905 * 179.74466 * 28 12 11 43 43 H 1.08002 * 120.08365 * 180.25762 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3465 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8839 2.3966 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3056 -2.4321 0.0957 10 6 1.8649 -3.5179 0.7977 11 6 1.1804 -4.6941 0.8849 12 6 -0.0706 -4.8236 0.2817 13 7 -0.7632 -6.0279 0.3746 14 6 -0.6807 -6.7677 1.4981 15 8 0.0572 -6.4245 2.3973 16 6 -1.5053 -8.0215 1.6369 17 16 -1.1744 -8.7875 3.2477 18 6 -2.2403 -10.2552 3.2282 19 6 -2.0763 -11.0124 4.5207 20 6 -2.8893 -10.7212 5.6002 21 6 -2.7386 -11.4153 6.7861 22 6 -1.7746 -12.4002 6.8927 23 7 -1.6127 -13.1432 8.1627 24 8 -2.3294 -12.8869 9.1137 25 8 -0.7630 -14.0107 8.2568 26 6 -0.9576 -12.6874 5.8151 27 6 -1.1127 -11.9977 4.6272 28 6 -0.6287 -3.7544 -0.4191 29 6 0.0416 -2.5703 -0.5105 30 1 -0.4851 0.8400 -0.0004 31 1 2.8336 -3.4193 1.2648 32 1 1.6079 -5.5276 1.4223 33 1 -1.3051 -6.3344 -0.3693 34 1 -1.2420 -8.7194 0.8421 35 1 -2.5634 -7.7704 1.5641 36 1 -1.9592 -10.8972 2.3933 37 1 -3.2800 -9.9478 3.1160 38 1 -3.6422 -9.9514 5.5170 39 1 -3.3735 -11.1875 7.6296 40 1 -0.2016 -13.4539 5.8999 41 1 -0.4775 -12.2252 3.7838 42 1 -1.5960 -3.8634 -0.8871 43 1 -0.3937 -1.7420 -1.0499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000452662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:09 Heat of formation + Delta-G solvation = 12.367929 kcal Electronic energy + Delta-G solvation = -27913.297953 eV Core-core repulsion = 23631.903226 eV Total energy + Delta-G solvation = -4281.394727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.098 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52321 -40.08402 -39.77407 -37.34920 -36.90438 -34.57707 -34.01868 -33.06732 -31.97520 -30.63607 -29.63713 -29.20517 -28.48710 -25.65284 -24.86872 -23.76310 -22.29462 -21.80708 -20.95067 -19.84927 -19.78658 -19.00675 -17.86773 -17.58224 -17.34662 -16.62665 -16.45195 -16.24725 -16.08605 -15.52898 -15.31722 -15.23776 -14.46210 -14.36279 -14.04213 -13.87376 -13.72629 -13.31426 -13.21770 -12.79560 -12.66084 -12.50593 -12.19520 -12.08043 -11.87763 -11.77050 -11.53618 -11.47354 -11.44221 -11.22474 -11.03326 -10.80395 -10.53053 -10.12493 -9.94736 -9.76257 -9.59464 -9.55373 -9.27092 -8.99580 -7.98929 -7.63324 -6.96306 -6.68786 -4.41560 -0.68034 0.41385 0.68262 1.01758 1.30514 2.09030 2.39820 2.81557 2.89833 3.01569 3.06243 3.11422 3.20887 3.51938 3.75012 3.79678 3.93164 3.97124 4.16115 4.35490 4.61703 4.63233 4.71051 4.74564 4.76429 4.86041 4.97609 5.10475 5.20345 5.22110 5.57583 5.57846 5.72102 6.03932 6.09696 6.35389 6.62824 6.80291 6.98795 7.11044 7.21212 7.27660 7.55762 7.62283 7.75328 7.98461 8.12614 8.23450 8.50266 8.59962 8.85853 8.91340 10.22239 Molecular weight = 372.10amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.001328 C = 0.001292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.000578 B =21073.802252 C =21666.770251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.083 4.083 12 C -0.002 4.002 13 N -0.644 5.644 14 C 0.513 3.487 15 O -0.510 6.510 16 C -0.130 4.130 17 S -0.151 6.151 18 C -0.088 4.088 19 C -0.013 4.013 20 C -0.101 4.101 21 C -0.052 4.052 22 C -0.045 4.045 23 N 0.029 4.971 24 O -0.160 6.160 25 O -0.161 6.161 26 C -0.052 4.052 27 C -0.102 4.102 28 C -0.118 4.118 29 C -0.142 4.142 30 H 0.278 0.722 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.396 0.604 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.091 0.909 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 -22.110 3.381 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.103 4.103 12 C -0.094 4.094 13 N -0.288 5.288 14 C 0.297 3.703 15 O -0.385 6.385 16 C -0.281 4.281 17 S 0.078 5.922 18 C -0.235 4.235 19 C -0.015 4.015 20 C -0.122 4.122 21 C -0.071 4.071 22 C -0.129 4.129 23 N 0.548 4.452 24 O -0.376 6.376 25 O -0.376 6.376 26 C -0.071 4.071 27 C -0.122 4.122 28 C -0.138 4.138 29 C -0.162 4.162 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.230 0.770 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.169 0.831 42 H 0.109 0.891 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.493 -20.952 4.179 22.991 hybrid contribution -0.910 0.058 -0.992 1.347 sum -9.402 -20.894 3.187 23.133 Atomic orbital electron populations 1.69760 1.07326 1.28718 1.37959 1.25893 0.94953 1.01258 0.92475 0.86135 0.80624 0.80730 0.78441 1.18527 1.19951 1.19937 1.19561 0.94843 0.90197 1.44375 0.90465 1.17754 0.92273 0.92038 0.88106 1.20814 1.01293 0.94917 1.05511 1.20394 0.92716 0.97893 0.99334 1.17235 0.94309 0.85655 1.12238 1.42845 1.48839 1.21360 1.15737 1.19515 0.83537 0.84301 0.82947 1.90753 1.38233 1.69948 1.39597 1.23588 1.04637 0.99903 1.00000 1.88009 1.57071 1.25306 1.21864 1.22585 1.04136 0.99220 0.97595 1.19666 0.93872 0.93531 0.94415 1.21149 1.00326 0.99701 0.90990 1.21064 0.95009 0.91620 0.99425 1.21179 1.04778 1.01139 0.85772 1.43635 0.99192 0.99874 1.02511 1.94550 1.42518 1.71029 1.29537 1.94546 1.28496 1.25070 1.89528 1.21062 0.96838 0.98727 0.90511 1.21138 0.98031 0.95369 0.97659 1.20299 0.98317 0.93094 1.02118 1.21193 0.97293 0.95537 1.02139 0.91121 0.88500 0.87465 0.77004 0.87294 0.87197 0.88156 0.88130 0.83094 0.82646 0.82657 0.83118 0.89068 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.66 10.59 55.55 0.59 -20.07 16 2 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 3 Si 0.92 18.68 29.56 -169.99 -5.03 13.65 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.03 9.02 -37.85 -0.34 -12.37 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 10 C -0.21 -5.09 9.74 -39.26 -0.38 -5.48 16 11 C -0.08 -1.94 8.61 -39.79 -0.34 -2.28 16 12 C 0.00 -0.05 6.31 -83.56 -0.53 -0.57 16 13 N -0.64 -10.20 5.30 -9.73 -0.05 -10.25 16 14 C 0.51 8.01 7.68 -10.98 -0.08 7.92 16 15 O -0.51 -10.42 13.28 5.56 0.07 -10.34 16 16 C -0.13 -1.24 6.43 36.01 0.23 -1.01 16 17 S -0.15 -1.58 20.86 -107.50 -2.24 -3.82 16 18 C -0.09 -0.47 6.07 36.00 0.22 -0.25 16 19 C -0.01 -0.08 5.14 -104.63 -0.54 -0.62 16 20 C -0.10 -0.59 9.70 -39.58 -0.38 -0.97 16 21 C -0.05 -0.36 9.55 -39.59 -0.38 -0.74 16 22 C -0.05 -0.38 6.85 -79.95 -0.55 -0.93 16 23 N 0.03 0.31 4.45 33.96 0.15 0.46 16 24 O -0.16 -1.87 18.45 -29.46 -0.54 -2.41 16 25 O -0.16 -1.86 18.45 -29.46 -0.54 -2.41 16 26 C -0.05 -0.35 9.56 -39.58 -0.38 -0.73 16 27 C -0.10 -0.57 9.70 -39.59 -0.38 -0.96 16 28 C -0.12 -2.57 9.90 -39.79 -0.39 -2.96 16 29 C -0.14 -3.53 8.61 -39.26 -0.34 -3.87 16 30 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 31 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.11 2.47 6.22 -52.49 -0.33 2.14 16 33 H 0.40 4.58 8.82 -40.82 -0.36 4.22 16 34 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.36 8.09 -51.92 -0.42 -0.06 16 37 H 0.10 0.38 8.09 -51.92 -0.42 -0.04 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.16 0.88 7.61 -52.49 -0.40 0.48 16 40 H 0.16 0.85 7.61 -52.49 -0.40 0.45 16 41 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.13 3.41 6.13 -52.49 -0.32 3.09 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -32.76 393.34 -11.65 -44.41 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.73 Total: 6.98 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -5.26 Total: -22.13 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.69 Total: -29.86 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.01 Total: -15.16 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.24 Total: -3.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.76 -11.65 -44.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000452662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.782 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds