Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48492 * 109.47135 * 240.00188 * 3 2 1 5 5 H 1.48497 * 109.46927 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46983 * 120.00071 * 3 2 1 7 7 C 1.39913 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99926 * 185.82249 * 7 2 1 9 9 C 1.41134 * 119.99540 * 5.82383 * 7 2 1 10 10 C 1.40884 * 120.16247 * 213.87007 * 9 7 2 11 11 C 1.36354 * 119.83114 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16806 * 0.02562 * 11 10 9 13 13 N 1.39128 * 119.83406 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00531 * 35.46784 * 13 12 11 15 15 O 1.21565 * 119.99579 * 356.10217 * 14 13 12 16 16 C 1.47792 * 120.00182 * 176.10585 * 14 13 12 17 17 C 1.39621 * 120.14718 * 5.12864 * 16 14 13 18 18 C 1.37929 * 119.85184 * 179.97438 * 17 16 14 19 19 C 1.38383 * 120.14785 * 0.02562 * 18 17 16 20 20 C 1.38346 * 120.29689 * 0.02562 * 19 18 17 21 21 C 1.37976 * 120.14561 * 359.69662 * 20 19 18 22 22 C 1.50703 * 120.07483 * 180.29842 * 21 20 19 23 23 C 1.52995 * 109.47251 * 259.31644 * 22 21 20 24 24 C 1.50703 * 109.47251 * 180.02562 * 23 22 21 25 25 C 1.38232 * 119.99803 * 269.72807 * 24 23 22 26 26 C 1.38244 * 119.99794 * 179.76249 * 25 24 23 27 27 C 1.38235 * 119.99694 * 0.50972 * 26 25 24 28 28 C 1.38238 * 120.00083 * 359.74514 * 27 26 25 29 29 C 1.38234 * 120.00071 * 0.02562 * 28 27 26 30 30 C 1.39508 * 120.32943 * 0.24120 * 12 11 10 31 31 C 1.36361 * 120.16291 * 359.49516 * 30 12 11 32 32 H 0.97003 * 120.00217 * 359.97438 * 1 2 3 33 33 H 1.07995 * 120.07984 * 0.02562 * 10 9 7 34 34 H 1.08001 * 119.91536 * 179.97438 * 11 10 9 35 35 H 0.97000 * 119.99434 * 215.74997 * 13 12 11 36 36 H 1.08004 * 120.07682 * 359.95714 * 17 16 14 37 37 H 1.07999 * 119.92639 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.85195 * 180.02562 * 19 18 17 39 39 H 1.07996 * 119.92642 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.47160 * 19.31597 * 22 21 20 41 41 H 1.09002 * 109.46838 * 139.31380 * 22 21 20 42 42 H 1.08992 * 109.47114 * 300.00034 * 23 22 21 43 43 H 1.09002 * 109.47415 * 60.00090 * 23 22 21 44 44 H 1.08000 * 120.00446 * 359.97438 * 25 24 23 45 45 H 1.07993 * 119.99933 * 180.22939 * 26 25 24 46 46 H 1.08002 * 119.99970 * 179.72230 * 27 26 25 47 47 H 1.07994 * 119.99631 * 179.97438 * 28 27 26 48 48 H 1.07992 * 120.00026 * 179.97438 * 29 28 27 49 49 H 1.08001 * 119.91799 * 179.72848 * 30 12 11 50 50 H 1.08002 * 120.08541 * 180.25124 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0084 -1.2116 0.0005 8 1 3.0841 -1.2139 0.0954 9 6 1.3082 -2.4308 -0.1229 10 6 1.7709 -3.5834 0.5420 11 6 1.0895 -4.7579 0.4176 12 6 -0.0630 -4.8201 -0.3662 13 7 -0.7526 -6.0222 -0.4887 14 6 -0.8276 -6.8661 0.5595 15 8 -0.2338 -6.6107 1.5890 16 6 -1.6315 -8.1020 0.4571 17 6 -2.2270 -8.4527 -0.7560 18 6 -2.9756 -9.6078 -0.8448 19 6 -3.1376 -10.4180 0.2653 20 6 -2.5512 -10.0758 1.4707 21 6 -1.7951 -8.9261 1.5717 22 6 -1.1515 -8.5584 2.8838 23 6 -1.9895 -7.4839 3.5795 24 6 -1.3456 -7.1157 4.8914 25 6 -1.6896 -7.7953 6.0449 26 6 -1.0952 -7.4608 7.2474 27 6 -0.1648 -6.4398 7.2981 28 6 0.1753 -5.7567 6.1454 29 6 -0.4155 -6.0943 4.9421 30 6 -0.5242 -3.6843 -1.0321 31 6 0.1437 -2.5015 -0.9128 32 1 -0.4850 0.8401 0.0004 33 1 2.6631 -3.5368 1.1487 34 1 1.4433 -5.6424 0.9264 35 1 -1.1760 -6.2548 -1.3299 36 1 -2.1020 -7.8209 -1.6230 37 1 -3.4371 -9.8800 -1.7825 38 1 -3.7244 -11.3216 0.1903 39 1 -2.6819 -10.7123 2.3333 40 1 -1.0926 -9.4416 3.5198 41 1 -0.1477 -8.1746 2.7012 42 1 -2.0484 -6.6007 2.9436 43 1 -2.9933 -7.8676 3.7622 44 1 -2.4201 -8.5898 6.0062 45 1 -1.3613 -7.9942 8.1480 46 1 0.2963 -6.1754 8.2383 47 1 0.9020 -4.9588 6.1851 48 1 -0.1501 -5.5604 4.0417 49 1 -1.4147 -3.7411 -1.6406 50 1 -0.2167 -1.6220 -1.4256 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001425959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = 31.237467 kcal Electronic energy + Delta-G solvation = -32206.136559 eV Core-core repulsion = 28127.208225 eV Total energy + Delta-G solvation = -4078.928334 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.163 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.49094 -39.07416 -38.59304 -37.10994 -35.03102 -34.07127 -33.00396 -31.48925 -31.28195 -30.69468 -29.59476 -28.84182 -28.10634 -25.34238 -24.17624 -23.47231 -22.38336 -21.82718 -21.42577 -20.82665 -20.38482 -19.73113 -17.71318 -17.26957 -16.64256 -16.38230 -15.89931 -15.45931 -15.20454 -15.11731 -14.98693 -14.64529 -14.57509 -13.95080 -13.76065 -13.59554 -13.39915 -13.21657 -12.97558 -12.82556 -12.67162 -12.52629 -12.47139 -12.13585 -11.83571 -11.73696 -11.65225 -11.39455 -11.32572 -11.11826 -11.11129 -10.95633 -10.76519 -10.66997 -10.53053 -9.93776 -9.51901 -9.36728 -9.08404 -9.07127 -8.88503 -8.82812 -8.73767 -8.44931 -7.57019 -6.89931 -6.67693 -4.34054 0.82892 1.21328 1.53665 1.58803 2.61795 3.04994 3.06506 3.08346 3.10890 3.28268 3.67178 3.88179 3.96152 3.99618 4.62466 4.66555 4.70375 4.77246 4.91705 4.99284 5.10246 5.16656 5.19197 5.29428 5.37080 5.46442 5.59354 5.61516 5.64875 5.70283 5.77657 5.79018 5.92138 6.06985 6.16470 6.18576 6.23830 6.27356 6.29774 6.38538 6.44255 6.58198 6.60177 6.72570 6.75962 6.79717 6.91046 6.93120 7.04878 7.18366 7.20861 7.27060 7.59406 7.70200 7.85446 8.03295 8.23836 8.28115 8.58798 8.73314 8.89483 8.97723 10.26629 Molecular weight = 371.16amu Principal moments of inertia in cm(-1) A = 0.007487 B = 0.002875 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.747518 B = 9738.082081 C =12946.057221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.107 3.893 10 C -0.208 4.208 11 C -0.080 4.080 12 C 0.002 3.998 13 N -0.644 5.644 14 C 0.539 3.461 15 O -0.516 6.516 16 C -0.125 4.125 17 C -0.087 4.087 18 C -0.134 4.134 19 C -0.099 4.099 20 C -0.129 4.129 21 C -0.022 4.022 22 C -0.083 4.083 23 C -0.065 4.065 24 C -0.073 4.073 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.130 4.130 28 C -0.120 4.120 29 C -0.100 4.100 30 C -0.118 4.118 31 C -0.141 4.141 32 H 0.279 0.721 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.393 0.607 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -17.166 3.762 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.105 3.895 10 C -0.228 4.228 11 C -0.099 4.099 12 C -0.091 4.091 13 N -0.287 5.287 14 C 0.327 3.673 15 O -0.394 6.394 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.152 4.152 19 C -0.117 4.117 20 C -0.147 4.147 21 C -0.023 4.023 22 C -0.119 4.119 23 C -0.102 4.102 24 C -0.073 4.073 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.148 4.148 28 C -0.138 4.138 29 C -0.117 4.117 30 C -0.138 4.138 31 C -0.161 4.161 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.228 0.772 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.152 0.848 49 H 0.108 0.892 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.799 -16.800 4.503 18.674 hybrid contribution -0.078 0.679 -0.445 0.816 sum -6.877 -16.121 4.058 17.990 Atomic orbital electron populations 1.69778 1.07303 1.29035 1.37259 1.25866 0.94882 1.01082 0.92539 0.86309 0.79912 0.80274 0.79828 1.18984 1.20417 1.19087 1.19475 0.94960 0.90262 1.44686 0.90583 1.17679 0.91661 0.92165 0.88012 1.20771 1.02848 0.94006 1.05195 1.20382 0.93224 0.97826 0.98508 1.17184 0.96725 0.84587 1.10566 1.42921 1.53348 1.18929 1.13504 1.18219 0.81831 0.83495 0.83739 1.90687 1.45503 1.74255 1.28977 1.19972 1.01563 0.96781 0.94532 1.21339 0.95902 0.96746 0.96635 1.21048 1.00075 0.95154 0.98944 1.21289 0.98414 0.99156 0.92845 1.21056 0.98492 0.97086 0.98070 1.20041 0.94557 0.92801 0.94905 1.20844 1.01950 0.98007 0.91129 1.20451 0.96972 0.99632 0.93128 1.19876 0.96945 0.95744 0.94747 1.21005 1.00581 1.00112 0.92511 1.21034 0.97803 0.98199 0.97548 1.21099 0.98634 0.96884 0.98207 1.21232 0.99948 0.99805 0.92806 1.21354 0.95361 0.96603 0.98430 1.20265 0.99077 0.92498 1.01944 1.20920 0.98499 0.95591 1.01056 0.90988 0.88657 0.87396 0.77244 0.85681 0.85685 0.85878 0.85633 0.92116 0.87182 0.90033 0.92203 0.86644 0.86656 0.86615 0.86150 0.84796 0.89191 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.89 10.94 55.55 0.61 -20.28 16 2 C 0.07 1.81 5.31 -17.33 -0.09 1.72 16 3 Si 0.91 18.80 29.56 -169.99 -5.03 13.78 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.20 9.03 -37.86 -0.34 -12.55 16 8 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 9 C 0.11 2.82 5.51 -106.80 -0.59 2.23 16 10 C -0.21 -5.13 9.74 -39.26 -0.38 -5.52 16 11 C -0.08 -1.83 8.60 -39.79 -0.34 -2.17 16 12 C 0.00 0.04 6.30 -83.60 -0.53 -0.49 16 13 N -0.64 -11.02 5.25 -10.61 -0.06 -11.08 16 14 C 0.54 9.09 7.20 -12.35 -0.09 9.00 16 15 O -0.52 -9.85 9.07 5.31 0.05 -9.81 16 16 C -0.13 -1.71 5.87 -104.97 -0.62 -2.33 16 17 C -0.09 -0.96 9.54 -39.18 -0.37 -1.34 16 18 C -0.13 -1.24 10.03 -39.64 -0.40 -1.64 16 19 C -0.10 -0.88 10.04 -39.49 -0.40 -1.28 16 20 C -0.13 -1.31 9.66 -39.64 -0.38 -1.70 16 21 C -0.02 -0.28 5.17 -104.22 -0.54 -0.82 16 22 C -0.08 -1.09 4.60 -27.88 -0.13 -1.22 16 23 C -0.06 -0.89 4.86 -27.88 -0.14 -1.03 16 24 C -0.07 -1.04 5.13 -104.62 -0.54 -1.58 16 25 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 26 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 27 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 28 C -0.12 -1.70 10.05 -39.58 -0.40 -2.09 16 29 C -0.10 -1.57 9.70 -39.58 -0.38 -1.95 16 30 C -0.12 -2.62 9.90 -39.78 -0.39 -3.01 16 31 C -0.14 -3.55 8.57 -39.26 -0.34 -3.88 16 32 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 33 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.11 2.42 6.25 -52.49 -0.33 2.09 16 35 H 0.39 5.40 6.87 -40.82 -0.28 5.12 16 36 H 0.13 1.15 6.43 -52.48 -0.34 0.82 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.13 1.02 8.03 -52.49 -0.42 0.60 16 40 H 0.06 0.70 8.00 -51.93 -0.42 0.28 16 41 H 0.11 1.74 5.85 -51.93 -0.30 1.44 16 42 H 0.08 1.34 6.50 -51.93 -0.34 1.01 16 43 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 48 H 0.13 2.40 7.84 -52.49 -0.41 1.99 16 49 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 50 H 0.12 3.13 6.44 -52.49 -0.34 2.80 16 LS Contribution 411.65 15.07 6.20 6.20 Total: -1.00 -29.13 411.65 -13.30 -42.43 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -6.52 Total: 16.22 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -8.56 Total: -37.47 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.55 Total: -31.36 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.05 Total: -9.81 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.13 -13.30 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001425959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.672 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds