Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46881 * 2 1 4 4 P 1.61001 * 122.99693 * 175.10776 * 3 2 1 5 5 O 1.47994 * 109.47052 * 55.33921 * 4 3 2 6 6 C 1.82302 * 109.46740 * 175.33691 * 4 3 2 7 7 C 1.52999 * 109.47251 * 294.99904 * 6 4 3 8 8 C 1.53005 * 109.47189 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47189 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47158 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46968 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00317 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00029 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99824 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46992 * 60.00141 * 15 13 11 17 17 H 1.48503 * 109.47329 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47402 * 300.00389 * 15 13 11 19 19 O 1.60993 * 109.47261 * 295.33568 * 4 3 2 20 20 C 1.35896 * 114.00502 * 166.04761 * 19 4 3 21 21 C 1.38727 * 120.05568 * 90.73015 * 20 19 4 22 22 C 1.38146 * 119.94780 * 179.97438 * 21 20 19 23 23 C 1.38270 * 120.05352 * 0.02562 * 22 21 20 24 24 N 1.47999 * 119.94592 * 179.97438 * 23 22 21 25 25 O 1.21800 * 119.99765 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99939 * 179.72132 * 24 23 22 27 27 C 1.38266 * 120.10649 * 0.27294 * 23 22 21 28 28 C 1.38142 * 120.06209 * 359.45190 * 27 23 22 29 29 H 1.09003 * 109.47564 * 60.00428 * 1 2 3 30 30 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47636 * 300.00468 * 1 2 3 32 32 H 1.08997 * 109.47300 * 239.99681 * 2 1 3 33 33 H 1.09000 * 109.47146 * 119.99272 * 2 1 3 34 34 H 1.09003 * 109.47481 * 55.00057 * 6 4 3 35 35 H 1.09002 * 109.47224 * 174.99785 * 6 4 3 36 36 H 1.09003 * 109.47219 * 299.99937 * 7 6 4 37 37 H 1.08997 * 109.47423 * 60.00126 * 7 6 4 38 38 H 1.09003 * 109.46805 * 299.99966 * 8 7 6 39 39 H 1.08997 * 109.47019 * 59.99653 * 8 7 6 40 40 H 1.09003 * 109.47002 * 300.00219 * 9 8 7 41 41 H 1.09002 * 109.47103 * 59.99582 * 9 8 7 42 42 H 1.09003 * 109.47453 * 300.00078 * 10 9 8 43 43 H 1.09002 * 109.47345 * 59.99864 * 10 9 8 44 44 H 0.96995 * 120.00138 * 180.02562 * 14 13 11 45 45 H 1.08001 * 120.03083 * 359.96734 * 21 20 19 46 46 H 1.07997 * 119.97722 * 179.97438 * 22 21 20 47 47 H 1.08003 * 119.97179 * 179.70435 * 27 23 22 48 48 H 1.07996 * 120.03735 * 180.27172 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 15 3.5670 1.7256 0.1152 5 8 4.3216 1.0379 -0.9562 6 6 3.7696 3.5288 -0.0602 7 6 3.3530 3.9542 -1.4695 8 6 3.5237 5.4676 -1.6169 9 6 3.1064 5.8931 -3.0260 10 6 3.2765 7.4064 -3.1731 11 6 2.8661 7.8254 -4.5613 12 1 2.5183 7.0863 -5.2678 13 6 2.9336 9.1526 -4.9291 14 7 3.3566 10.0527 -4.0686 15 14 2.4242 9.6721 -6.6495 16 1 1.0021 9.3091 -6.8754 17 1 2.5894 11.1410 -6.7924 18 1 3.2766 8.9791 -7.6487 19 8 4.1276 1.2596 1.5506 20 6 5.4837 1.2566 1.6400 21 6 6.1535 2.3894 2.0788 22 6 7.5320 2.3838 2.1694 23 6 8.2441 1.2504 1.8226 24 7 9.7209 1.2472 1.9200 25 8 10.3079 2.2422 2.3059 26 8 10.3488 0.2477 1.6196 27 6 7.5791 0.1222 1.3791 28 6 6.2005 0.1209 1.2922 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.1438 4.0378 0.6729 35 1 4.8135 3.7950 0.1060 36 1 3.9788 3.4453 -2.2026 37 1 2.3091 3.6881 -1.6357 38 1 2.8981 5.9768 -0.8837 39 1 4.5676 5.7333 -1.4508 40 1 3.7316 5.3838 -3.7594 41 1 2.0623 5.6273 -3.1916 42 1 2.6510 7.9154 -2.4397 43 1 4.3204 7.6726 -3.0074 44 1 3.4038 10.9864 -4.3271 45 1 5.5979 3.2752 2.3493 46 1 8.0540 3.2655 2.5106 47 1 8.1379 -0.7603 1.1043 48 1 5.6812 -0.7621 0.9499 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001730984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = -177.734184 kcal Electronic energy + Delta-G solvation = -30516.885383 eV Core-core repulsion = 26038.606177 eV Total energy + Delta-G solvation = -4478.279205 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.142 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.55530 -40.78443 -38.15862 -37.77345 -36.91142 -35.88295 -33.56646 -33.08059 -32.17358 -31.79011 -31.58424 -30.92975 -27.11905 -26.77731 -24.16300 -23.86428 -23.52861 -23.11566 -21.35828 -20.25366 -20.07914 -19.86352 -19.05736 -18.50404 -17.89323 -17.56497 -16.88263 -16.30174 -16.22187 -15.70245 -15.54936 -15.33329 -14.78241 -14.57404 -14.50362 -14.27535 -14.02743 -13.72619 -13.52326 -13.19190 -13.10385 -12.93472 -12.69692 -12.37257 -12.00082 -11.98495 -11.82507 -11.79669 -11.58845 -11.55780 -11.46199 -11.38878 -11.08102 -10.96913 -10.85899 -10.62088 -10.57102 -10.50900 -10.35728 -10.10990 -9.93269 -9.70888 -9.29486 -9.04410 -8.36171 -6.01230 -4.03771 -0.77118 0.24334 0.46187 0.89948 0.98381 2.54721 2.87351 3.32374 3.36319 3.39223 3.59432 3.71223 3.82367 4.05884 4.19393 4.37298 4.40901 4.45281 4.47240 4.57499 4.60366 4.80402 4.83222 4.97487 5.06397 5.16657 5.21196 5.24409 5.34055 5.34605 5.40035 5.44583 5.53300 5.66397 5.75510 5.84482 5.99010 6.04802 6.21102 6.27617 6.38506 6.70694 6.85603 6.92928 7.11312 7.26663 7.65214 7.79629 7.98538 8.41741 9.03191 9.60244 11.10235 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.007372 B = 0.002149 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.344988 B =13023.591384 C =16099.708935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.104 3.896 3 O -0.717 6.717 4 P 2.341 2.659 5 O -0.995 6.995 6 C -0.734 4.734 7 C -0.106 4.106 8 C -0.114 4.114 9 C -0.113 4.113 10 C 0.021 3.979 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 O -0.644 6.644 20 C 0.156 3.844 21 C -0.154 4.154 22 C -0.031 4.031 23 C -0.050 4.050 24 N 0.029 4.971 25 O -0.156 6.156 26 O -0.153 6.153 27 C -0.029 4.029 28 C -0.112 4.112 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.261 0.739 45 H 0.157 0.843 46 H 0.166 0.834 47 H 0.167 0.833 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -26.708 18.557 32.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 O -0.742 6.742 4 P 2.547 2.453 5 O -1.097 7.097 6 C -0.759 4.759 7 C -0.144 4.144 8 C -0.152 4.152 9 C -0.151 4.151 10 C -0.016 4.016 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 O -0.654 6.654 20 C 0.114 3.886 21 C -0.172 4.172 22 C -0.050 4.050 23 C -0.133 4.133 24 N 0.549 4.451 25 O -0.372 6.372 26 O -0.370 6.370 27 C -0.048 4.048 28 C -0.131 4.131 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.174 0.826 46 H 0.183 0.817 47 H 0.185 0.815 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.123 -25.595 18.684 31.690 hybrid contribution -0.036 1.386 -0.571 1.499 sum -0.159 -24.209 18.114 30.236 Atomic orbital electron populations 1.21928 0.92996 1.02848 1.04007 1.22400 0.96888 0.75771 1.01839 1.88054 1.53561 1.38229 1.94396 0.91813 0.50009 0.53265 0.50256 1.95175 1.75987 1.78047 1.60460 1.31494 1.09188 1.28360 1.06881 1.21338 1.01914 0.99637 0.91467 1.21652 1.01258 0.92508 0.99776 1.21664 0.99859 1.00339 0.93206 1.19097 0.96993 0.88737 0.96801 1.21244 1.43647 0.92797 0.98271 0.92686 1.25048 0.95373 0.96788 0.97363 1.69955 1.47205 1.01671 1.34859 0.86633 0.79134 0.77356 0.84738 1.20224 1.21266 1.20165 1.87442 1.23885 1.90634 1.63409 1.18374 0.78977 0.94289 0.96948 1.21400 0.93905 0.99124 1.02819 1.20904 0.93189 0.97254 0.93622 1.21221 0.80096 0.98937 1.12997 1.43506 1.03255 1.00304 0.98010 1.94572 1.70425 1.24309 1.47905 1.94556 1.67080 1.23745 1.51637 1.20987 0.93933 0.97353 0.92572 1.21375 0.92893 0.99208 0.99606 0.90893 0.90289 0.91545 0.90269 0.92056 0.88072 0.86965 0.89922 0.91135 0.92713 0.92530 0.93099 0.93291 0.96830 0.96744 0.92951 0.82560 0.81684 0.81527 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.10 0.65 7.17 37.16 0.27 0.92 16 3 O -0.72 -6.39 10.19 -11.30 -0.12 -6.50 16 4 P 2.34 22.89 4.97 -42.89 -0.21 22.67 16 5 O -0.99 -12.98 17.72 -9.10 -0.16 -13.14 16 6 C -0.73 -8.48 6.33 37.16 0.24 -8.24 16 7 C -0.11 -1.59 5.21 -26.73 -0.14 -1.73 16 8 C -0.11 -2.06 5.21 -26.73 -0.14 -2.20 16 9 C -0.11 -2.45 5.15 -26.73 -0.14 -2.59 16 10 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 11 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 12 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 15 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 O -0.64 -4.84 10.64 4.52 0.05 -4.79 16 20 C 0.16 1.22 5.17 -39.22 -0.20 1.02 16 21 C -0.15 -1.07 9.41 -39.43 -0.37 -1.44 16 22 C -0.03 -0.23 9.55 -39.60 -0.38 -0.60 16 23 C -0.05 -0.43 6.85 -79.94 -0.55 -0.98 16 24 N 0.03 0.31 4.45 33.97 0.15 0.46 16 25 O -0.16 -1.84 18.44 -29.46 -0.54 -2.38 16 26 O -0.15 -1.74 18.44 -29.46 -0.54 -2.28 16 27 C -0.03 -0.21 9.55 -39.61 -0.38 -0.58 16 28 C -0.11 -0.76 9.55 -39.43 -0.38 -1.14 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.11 1.22 7.56 -51.93 -0.39 0.82 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.17 0.96 7.60 -52.49 -0.40 0.56 16 47 H 0.17 0.82 7.61 -52.48 -0.40 0.42 16 48 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 426.90 15.07 6.43 6.43 Total: -1.00 -36.36 426.90 -9.06 -45.42 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -7.50 Total: -4.44 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -2.34 Total: -31.66 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.89 Total: -26.44 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -1.32 Total: -29.09 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 15 Polarization: 22.89 SS G_CDS: -0.21 Total: 22.67 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -36.36 -9.06 -45.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001730984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.311 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds