Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00174 * 2 1 4 4 H 1.48497 * 109.46816 * 270.00380 * 3 2 1 5 5 H 1.48492 * 109.46785 * 29.99918 * 3 2 1 6 6 H 1.48496 * 109.46876 * 150.00476 * 3 2 1 7 7 C 1.37886 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99382 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47097 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47304 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47302 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47305 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47010 * 180.02562 * 13 12 11 15 15 O 1.21254 * 120.00146 * 0.02562 * 14 13 12 16 16 C 1.47172 * 119.99651 * 180.02562 * 14 13 12 17 17 C 1.39868 * 120.17014 * 359.97438 * 16 14 13 18 18 C 1.37870 * 119.83827 * 180.02562 * 17 16 14 19 19 C 1.38417 * 120.17808 * 0.02562 * 18 17 16 20 20 C 1.38434 * 120.34489 * 359.97438 * 19 18 17 21 21 I 2.09498 * 119.92068 * 180.02562 * 20 19 18 22 22 C 1.37974 * 120.15672 * 0.02562 * 20 19 18 23 23 H 0.97005 * 119.99856 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47216 * 60.00147 * 9 7 2 25 25 H 1.09003 * 109.47427 * 299.99747 * 9 7 2 26 26 H 1.08993 * 109.47313 * 59.99601 * 10 9 7 27 27 H 1.09003 * 109.46580 * 300.00026 * 10 9 7 28 28 H 1.09001 * 109.47206 * 59.99786 * 11 10 9 29 29 H 1.08998 * 109.47128 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.46842 * 59.99958 * 12 11 10 31 31 H 1.08998 * 109.47554 * 300.00382 * 12 11 10 32 32 H 1.09001 * 109.46880 * 60.00379 * 13 12 11 33 33 H 1.08995 * 109.47706 * 300.00391 * 13 12 11 34 34 H 1.08005 * 120.08018 * 0.02562 * 17 16 14 35 35 H 1.07998 * 119.90838 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.82280 * 180.02562 * 19 18 17 37 37 H 1.08004 * 120.08696 * 180.26859 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7093 -7.4750 -0.0018 14 6 2.6886 -8.6205 -0.0018 15 8 3.8808 -8.3989 -0.0014 16 6 2.1980 -10.0080 -0.0024 17 6 0.8236 -10.2676 -0.0024 18 6 0.3715 -11.5701 -0.0024 19 6 1.2738 -12.6198 -0.0019 20 6 2.6356 -12.3715 -0.0019 21 53 3.9894 -13.9703 -0.0019 22 6 3.1035 -11.0735 -0.0018 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8893 27 1 2.8718 -3.6043 -0.8906 28 1 0.8538 -5.0446 -0.8914 29 1 0.8532 -5.0451 0.8885 30 1 3.1010 -6.0927 0.8882 31 1 3.1010 -6.0919 -0.8917 32 1 1.0824 -7.5326 -0.8916 33 1 1.0829 -7.5331 0.8883 34 1 0.1182 -9.4497 -0.0024 35 1 -0.6895 -11.7718 -0.0028 36 1 0.9133 -13.6379 -0.0023 37 1 4.1662 -10.8810 -0.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002392832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = -31.925201 kcal Electronic energy + Delta-G solvation = -17723.360123 eV Core-core repulsion = 14709.688076 eV Total energy + Delta-G solvation = -3013.672047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 372.033 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48013 -38.72076 -35.56134 -33.41587 -32.90899 -31.80928 -31.01109 -28.56756 -27.44875 -25.01370 -23.38071 -22.60131 -21.14572 -20.13679 -19.46141 -17.54229 -16.27455 -15.99112 -15.97665 -15.88357 -14.74232 -14.51118 -14.45778 -14.30420 -13.71467 -13.46008 -12.82105 -12.62594 -12.46176 -12.20643 -11.54751 -11.52885 -11.44207 -11.26738 -10.89881 -10.83739 -10.48750 -10.38956 -10.37434 -10.36839 -9.89923 -9.60258 -9.55119 -9.32276 -9.20310 -8.95616 -8.31030 -5.96462 -3.98175 0.15832 0.62131 0.65167 2.04697 3.21470 3.34230 3.40142 3.44235 3.66944 4.28274 4.44034 4.49180 4.53018 4.75232 4.83500 4.95379 5.08500 5.20661 5.29413 5.39185 5.54015 5.66192 5.71354 5.73767 5.76710 5.85859 6.09598 6.18704 6.29247 6.47726 6.58231 6.85466 6.99624 7.21627 7.30649 7.72864 7.88687 8.04811 8.48623 9.09364 9.65596 11.14888 Molecular weight = 372.03amu Principal moments of inertia in cm(-1) A = 0.042444 B = 0.001443 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.535105 B =19402.199593 C =20025.383724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.112 4.112 11 C -0.118 4.118 12 C -0.111 4.111 13 C -0.165 4.165 14 C 0.394 3.606 15 O -0.444 6.444 16 C -0.161 4.161 17 C -0.054 4.054 18 C -0.127 4.127 19 C -0.059 4.059 20 C -0.115 4.115 21 I -0.037 7.037 22 C -0.032 4.032 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 -37.436 -0.006 37.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.155 4.155 12 C -0.148 4.148 13 C -0.203 4.203 14 C 0.270 3.730 15 O -0.318 6.318 16 C -0.164 4.164 17 C -0.072 4.072 18 C -0.146 4.146 19 C -0.080 4.080 20 C -0.256 4.256 21 I 0.113 6.887 22 C -0.052 4.052 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.992 -38.318 -0.001 38.526 hybrid contribution -0.500 1.766 -0.010 1.835 sum 3.492 -36.553 -0.011 36.719 Atomic orbital electron populations 1.69966 1.06037 1.26479 1.51180 1.25038 0.94859 0.99238 0.95453 0.86606 0.79877 0.83528 0.78075 1.20699 1.21252 1.19894 1.21310 0.93072 0.91233 1.50143 0.92747 1.19109 0.94069 0.91497 0.97039 1.21626 0.99055 0.93971 1.00270 1.21661 0.97738 0.94730 1.01419 1.21485 0.98293 0.92009 1.03022 1.22120 0.99137 0.94366 1.04629 1.22670 0.90046 0.88979 0.71263 1.90542 1.18816 1.87124 1.35323 1.20748 0.94271 0.95336 1.06048 1.21705 0.94542 0.97722 0.93280 1.21235 1.00286 0.92081 1.01044 1.21361 0.91307 1.00262 0.95055 1.24240 0.96080 0.95767 1.09484 1.96906 1.55884 1.37201 1.98755 1.21400 1.00840 0.90219 0.92766 0.93092 0.96730 0.96732 0.93484 0.93495 0.92499 0.92493 0.91627 0.91620 0.88179 0.88183 0.83939 0.84304 0.84901 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C -0.12 -1.92 5.21 -26.74 -0.14 -2.06 16 12 C -0.11 -1.53 4.50 -26.74 -0.12 -1.65 16 13 C -0.17 -1.68 4.31 -27.88 -0.12 -1.80 16 14 C 0.39 4.44 7.12 -30.68 -0.22 4.22 16 15 O -0.44 -6.51 15.98 5.58 0.09 -6.42 16 16 C -0.16 -1.50 5.87 -105.07 -0.62 -2.12 16 17 C -0.05 -0.37 9.47 -39.11 -0.37 -0.74 16 18 C -0.13 -0.72 10.03 -39.65 -0.40 -1.12 16 19 C -0.06 -0.38 9.75 -39.44 -0.38 -0.77 16 20 C -0.12 -0.93 6.19 -39.61 -0.25 -1.18 16 21 I -0.04 -0.28 40.26 -73.02 -2.94 -3.22 16 22 C -0.03 -0.30 9.30 -39.08 -0.36 -0.66 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.14 0.67 7.05 -52.48 -0.37 0.30 16 35 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 37 H 0.14 1.43 7.65 -52.48 -0.40 1.03 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -32.42 344.93 -10.98 -43.40 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -5.38 Total: -5.54 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.66 Total: -23.85 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: 0.09 Total: -6.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 53 Polarization: -0.28 SS G_CDS: -2.94 Total: -3.22 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.42 -10.98 -43.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.474 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds