Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86802 * 119.99994 * 2 1 4 4 H 1.48498 * 109.46764 * 239.99761 * 3 2 1 5 5 H 1.48497 * 109.47074 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46964 * 119.99843 * 3 2 1 7 7 C 1.38796 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99598 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.76203 * 99.99767 * 179.97438 * 9 7 2 11 11 N 1.30959 * 118.47417 * 0.02562 * 10 9 7 12 12 C 1.34757 * 121.63450 * 179.97438 * 11 10 9 13 13 C 1.39809 * 121.56940 * 180.02562 * 12 11 10 14 14 C 1.37767 * 119.54079 * 179.97438 * 13 12 11 15 15 Cl 1.73601 * 119.60360 * 180.02562 * 14 13 12 16 16 C 1.39054 * 120.79261 * 0.02562 * 14 13 12 17 17 C 1.36715 * 120.73128 * 0.02562 * 16 14 13 18 18 C 1.39385 * 119.67908 * 359.97438 * 17 16 14 19 19 C 1.46941 * 121.81532 * 180.27916 * 18 17 16 20 20 O 1.21735 * 121.24886 * 359.97438 * 19 18 17 21 21 N 1.35330 * 117.50112 * 180.21961 * 19 18 17 22 22 C 1.46505 * 119.77830 * 179.76880 * 21 19 18 23 23 C 1.50703 * 109.47064 * 269.72946 * 22 21 19 24 24 C 1.38234 * 119.99770 * 269.72527 * 23 22 21 25 25 C 1.38239 * 119.99901 * 179.76875 * 24 23 22 26 26 C 1.38240 * 119.99645 * 0.50240 * 25 24 23 27 27 C 1.38227 * 120.00205 * 359.74956 * 26 25 24 28 28 C 1.38232 * 119.99860 * 89.99969 * 23 22 21 29 29 H 0.97005 * 119.99630 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.23066 * 359.95695 * 13 12 11 31 31 H 1.08007 * 119.63586 * 180.02562 * 16 14 13 32 32 H 1.07995 * 120.16903 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.47068 * 29.72915 * 22 21 19 34 34 H 1.09001 * 109.47372 * 149.73003 * 22 21 19 35 35 H 1.08001 * 120.00330 * 359.97438 * 24 23 22 36 36 H 1.08001 * 119.99843 * 180.23314 * 25 24 23 37 37 H 1.08002 * 119.99612 * 179.72381 * 26 25 24 38 38 H 1.07996 * 120.00251 * 179.97438 * 27 26 25 39 39 H 1.07998 * 120.00407 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0092 -1.2020 0.0005 8 1 3.0893 -1.2020 0.0001 9 16 1.1282 -2.7280 0.0005 10 6 2.4780 -3.8606 0.0005 11 7 3.6963 -3.3800 0.0011 12 6 4.7748 -4.1879 0.0016 13 6 6.0748 -3.6734 0.0027 14 6 7.1474 -4.5379 0.0037 15 17 8.7623 -3.9008 0.0058 16 6 6.9521 -5.9147 0.0032 17 6 5.6905 -6.4413 0.0011 18 6 4.5871 -5.5897 0.0000 19 6 3.2109 -6.1048 0.0038 20 8 2.9844 -7.3008 0.0076 21 7 2.2049 -5.1996 -0.0022 22 6 0.8135 -5.6583 -0.0039 23 6 0.3379 -5.8147 -1.4253 24 6 -0.2602 -4.7512 -2.0750 25 6 -0.6922 -4.8932 -3.3805 26 6 -0.5354 -6.1019 -4.0327 27 6 0.0579 -7.1670 -3.3813 28 6 0.4946 -7.0234 -2.0775 29 1 -0.4850 0.8401 -0.0004 30 1 6.2370 -2.6057 0.0024 31 1 7.8066 -6.5753 0.0045 32 1 5.5493 -7.5120 0.0003 33 1 0.7466 -6.6176 0.5093 34 1 0.1892 -4.9272 0.5097 35 1 -0.3870 -3.8083 -1.5638 36 1 -1.1560 -4.0611 -3.8893 37 1 -0.8769 -6.2142 -5.0511 38 1 0.1800 -8.1114 -3.8907 39 1 0.9574 -7.8558 -1.5683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002619620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = 27.421959 kcal Electronic energy + Delta-G solvation = -28016.489416 eV Core-core repulsion = 24040.623550 eV Total energy + Delta-G solvation = -3975.865866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 372.044 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14979 -39.14572 -38.18836 -37.02860 -36.32170 -34.26187 -32.95158 -31.59914 -30.71748 -30.62251 -29.67172 -26.61744 -25.95103 -24.64746 -23.52074 -22.43026 -21.68689 -21.19941 -19.23810 -18.49757 -17.80067 -17.04266 -16.67150 -15.78775 -15.66702 -15.21398 -15.09238 -14.99434 -14.78498 -14.76049 -14.38280 -13.72949 -13.47615 -13.30418 -13.22099 -13.05449 -12.56108 -12.47325 -12.33514 -12.09872 -11.85901 -11.56546 -11.46052 -11.35392 -11.29466 -11.00867 -10.92913 -10.83914 -10.49157 -9.90639 -9.73008 -9.53271 -9.23514 -9.20647 -8.73460 -8.73215 -8.63951 -8.17915 -7.07509 -6.75742 -4.51073 0.75783 1.00561 1.36663 1.59293 2.10069 2.20002 2.56995 2.90436 3.00109 3.08854 3.09113 3.13116 3.76216 3.99756 4.25210 4.53230 4.60449 4.72323 4.86067 4.90408 4.94970 5.04268 5.15483 5.20628 5.30536 5.36752 5.47004 5.57871 5.61683 5.73415 5.81082 6.02538 6.11620 6.12775 6.25070 6.30158 6.36649 6.53096 6.60178 6.69595 6.74111 6.82294 7.00927 7.15965 7.33238 8.02746 8.18969 8.41885 8.78382 10.30943 Molecular weight = 372.04amu Principal moments of inertia in cm(-1) A = 0.006048 B = 0.004845 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4628.618263 B = 5777.698660 C = 9519.290307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.080 3.920 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.119 0.881 9 S 0.186 5.814 10 C 0.332 3.668 11 N -0.540 5.540 12 C 0.218 3.782 13 C -0.127 4.127 14 C 0.020 3.980 15 Cl -0.074 7.074 16 C -0.172 4.172 17 C -0.013 4.013 18 C -0.236 4.236 19 C 0.560 3.440 20 O -0.529 6.529 21 N -0.528 5.528 22 C 0.133 3.867 23 C -0.114 4.114 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.095 4.095 29 H 0.280 0.720 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -9.235 -2.624 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.131 4.131 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.690 4.690 8 H 0.137 0.863 9 S 0.432 5.568 10 C -0.032 4.032 11 N -0.269 5.269 12 C 0.096 3.904 13 C -0.149 4.149 14 C -0.008 4.008 15 Cl -0.045 7.045 16 C -0.193 4.193 17 C -0.033 4.033 18 C -0.245 4.245 19 C 0.353 3.647 20 O -0.406 6.406 21 N -0.252 5.252 22 C 0.011 3.989 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.150 4.150 28 C -0.113 4.113 29 H 0.090 0.910 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.506 -9.041 -2.589 9.524 hybrid contribution 1.921 0.461 -0.085 1.977 sum 3.427 -8.580 -2.675 9.618 Atomic orbital electron populations 1.69876 1.06251 1.29299 1.44700 1.25194 0.95196 1.00035 0.92718 0.85931 0.79202 0.79182 0.79782 1.19186 1.20632 1.19160 1.23667 0.98191 0.88965 1.58175 0.86334 1.83429 0.99253 0.96669 1.77457 1.26255 0.99952 0.85221 0.91785 1.69066 0.95010 1.32748 1.30035 1.18650 0.92970 0.88242 0.90577 1.20586 0.88774 1.00341 1.05243 1.20882 0.85329 0.93478 1.01137 1.98357 1.22271 1.87184 1.96733 1.20476 0.97602 0.92740 1.08502 1.20518 0.90292 0.99691 0.92800 1.20527 0.93289 0.94680 1.16053 1.18266 0.84932 0.85587 0.75906 1.90763 1.84849 1.14169 1.50802 1.46482 1.08378 1.05940 1.64432 1.20806 0.80194 1.03080 0.94823 1.19958 1.00882 0.94643 0.96002 1.21630 0.95712 0.98648 0.95057 1.21189 1.00485 0.97514 0.94986 1.21186 0.99060 0.93444 0.99609 1.21080 1.00026 0.98909 0.94998 1.21170 0.98082 0.97230 0.94830 0.91047 0.83846 0.84984 0.84564 0.87643 0.87497 0.84107 0.85785 0.86348 0.86331 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.52 13.22 55.49 0.73 -20.79 16 2 C 0.08 1.93 5.49 -17.47 -0.10 1.83 16 3 Si 0.93 19.25 29.55 -169.99 -5.02 14.23 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.54 -13.29 9.23 30.94 0.29 -13.01 16 8 H 0.12 2.98 6.48 -52.48 -0.34 2.64 16 9 S 0.19 3.97 16.81 -107.50 -1.81 2.16 16 10 C 0.33 6.83 7.77 -88.49 -0.69 6.14 16 11 N -0.54 -11.61 8.28 -10.89 -0.09 -11.70 16 12 C 0.22 4.22 6.62 -84.78 -0.56 3.66 16 13 C -0.13 -2.17 9.80 -39.17 -0.38 -2.56 16 14 C 0.02 0.30 6.31 -39.45 -0.25 0.05 16 15 Cl -0.07 -0.96 28.93 -51.86 -1.50 -2.46 16 16 C -0.17 -2.38 9.74 -39.83 -0.39 -2.76 16 17 C -0.01 -0.20 9.62 -39.71 -0.38 -0.59 16 18 C -0.24 -4.32 5.90 -104.73 -0.62 -4.94 16 19 C 0.56 10.61 7.66 -12.49 -0.10 10.51 16 20 O -0.53 -10.14 15.91 5.16 0.08 -10.05 16 21 N -0.53 -9.78 2.61 -118.67 -0.31 -10.09 16 22 C 0.13 2.10 5.09 -5.19 -0.03 2.07 16 23 C -0.11 -1.77 5.46 -104.62 -0.57 -2.34 16 24 C -0.09 -1.44 9.27 -39.58 -0.37 -1.80 16 25 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 26 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 28 C -0.09 -1.38 9.70 -39.58 -0.38 -1.77 16 29 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.14 2.39 8.06 -52.49 -0.42 1.96 16 31 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.14 1.88 7.81 -52.49 -0.41 1.47 16 33 H 0.11 1.52 7.40 -51.93 -0.38 1.14 16 34 H 0.11 1.60 6.42 -51.93 -0.33 1.26 16 35 H 0.14 2.36 5.66 -52.49 -0.30 2.06 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.83 7.66 -52.49 -0.40 1.42 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -26.78 364.46 -11.56 -38.34 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.42 Total: 6.46 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -5.72 Total: -11.60 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.33 Total: -42.58 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.81 Total: 2.16 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.78 -11.56 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002619620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.762 kcal (2) G-P(sol) polarization free energy of solvation -26.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds