Wall clock time and date at job start Tue Mar 31 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 110.47078 * 2 1 4 4 C 1.53004 * 109.47140 * 62.34554 * 3 2 1 5 5 C 1.53003 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.47201 * 109.47385 * 179.97438 * 5 4 3 7 7 N 5.91002 * 88.60549 * 35.79533 * 2 1 3 8 8 N 1.47151 * 110.53041 * 122.80536 * 2 1 3 9 9 C 1.29810 * 107.55350 * 118.62206 * 8 2 1 10 10 S 1.76198 * 123.63070 * 180.02562 * 9 8 2 11 11 C 1.81000 * 99.99950 * 359.97201 * 10 9 8 12 12 C 1.52996 * 109.47124 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47347 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00355 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00054 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00239 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47535 * 120.00001 * 17 15 13 20 20 H 1.48502 * 109.47011 * 239.99990 * 17 15 13 21 21 N 1.37566 * 112.73707 * 359.75021 * 9 8 2 22 22 C 1.40141 * 124.69102 * 180.31633 * 21 9 8 23 23 C 1.38840 * 120.06593 * 247.15192 * 22 21 9 24 24 C 1.38116 * 119.93268 * 179.74202 * 23 22 21 25 25 C 1.38281 * 120.06332 * 0.51229 * 24 23 22 26 26 C 1.38271 * 120.13966 * 359.76419 * 25 24 23 27 27 C 1.38125 * 120.06229 * 359.97438 * 26 25 24 28 28 C 1.34970 * 110.61755 * 0.42953 * 21 9 8 29 29 O 1.21254 * 127.43131 * 179.86410 * 28 21 9 30 30 H 1.09008 * 109.46866 * 181.95783 * 1 2 3 31 31 H 1.09003 * 109.47270 * 301.95147 * 1 2 3 32 32 H 1.08995 * 109.47222 * 61.95462 * 1 2 3 33 33 H 1.08996 * 109.47222 * 182.34424 * 3 2 1 34 34 H 1.08998 * 109.47344 * 302.34722 * 3 2 1 35 35 H 1.09001 * 109.47274 * 299.99691 * 4 3 2 36 36 H 1.08998 * 109.46864 * 59.99875 * 4 3 2 37 37 H 1.09001 * 109.47028 * 300.00107 * 5 4 3 38 38 H 1.09004 * 109.46884 * 59.99639 * 5 4 3 39 39 H 1.08997 * 109.47333 * 300.00349 * 11 10 9 40 40 H 1.08999 * 109.47188 * 60.00343 * 11 10 9 41 41 H 1.08997 * 109.47326 * 300.00384 * 12 11 10 42 42 H 1.09003 * 109.47459 * 59.99878 * 12 11 10 43 43 H 0.97002 * 120.00177 * 179.97438 * 16 15 13 44 44 H 1.07998 * 120.03327 * 0.02562 * 23 22 21 45 45 H 1.08000 * 119.96806 * 180.25433 * 24 23 22 46 46 H 1.08002 * 119.92885 * 179.74435 * 25 24 23 47 47 H 1.07995 * 119.96877 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.03067 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0651 1.4333 0.0000 4 6 1.6162 2.1453 1.2777 5 6 2.1519 3.5785 1.2780 6 6 1.7195 4.2637 2.5070 7 7 1.3862 4.7923 3.4557 8 7 2.0461 -0.7466 1.1583 9 6 2.7386 -1.7457 0.7031 10 16 3.5508 -2.9207 1.7348 11 6 3.1007 -2.2727 3.3638 12 6 3.7117 -3.1583 4.4515 13 6 3.3376 -2.6185 5.8078 14 1 2.7249 -1.7326 5.8862 15 6 3.7775 -3.2555 6.9487 16 7 4.5232 -4.3346 6.8534 17 14 3.3131 -2.5867 8.6299 18 1 2.4738 -1.3728 8.4652 19 1 2.5514 -3.6177 9.3797 20 1 4.5454 -2.2377 9.3814 21 7 2.7652 -1.7919 -0.6716 22 6 3.4325 -2.7677 -1.4241 23 6 4.5337 -2.4193 -2.1947 24 6 5.1926 -3.3842 -2.9311 25 6 4.7501 -4.6941 -2.9099 26 6 3.6503 -5.0432 -2.1480 27 6 2.9905 -4.0836 -1.4051 28 6 2.0616 -0.7659 -1.1952 29 8 1.8880 -0.5143 -2.3685 30 1 -0.3633 -1.0272 0.0351 31 1 -0.3634 0.5438 0.8720 32 1 -0.3633 0.4832 -0.9069 33 1 3.1541 1.4147 -0.0420 34 1 1.6771 1.9661 -0.8682 35 1 0.5272 2.1641 1.3198 36 1 2.0043 1.6126 2.1459 37 1 3.2409 3.5594 1.2362 38 1 1.7642 4.1114 0.4097 39 1 3.4791 -1.2558 3.4675 40 1 2.0156 -2.2688 3.4661 41 1 3.3330 -4.1751 4.3476 42 1 4.7970 -3.1628 4.3494 43 1 4.8330 -4.7826 7.6561 44 1 4.8774 -1.3957 -2.2146 45 1 6.0517 -3.1146 -3.5275 46 1 5.2645 -5.4461 -3.4898 47 1 3.3069 -6.0669 -2.1337 48 1 2.1313 -4.3567 -0.8105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003026545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:23 Heat of formation + Delta-G solvation = 42.725879 kcal Electronic energy + Delta-G solvation = -30437.370252 eV Core-core repulsion = 26390.843701 eV Total energy + Delta-G solvation = -4046.526551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22535 -39.23759 -37.66403 -37.26437 -35.88125 -33.88052 -33.59190 -31.43687 -31.22532 -30.91228 -29.55410 -27.72369 -25.94406 -25.30453 -23.40641 -22.98935 -22.74454 -21.54583 -20.38250 -20.12826 -18.45041 -17.73437 -16.75617 -16.58549 -16.43329 -16.34755 -16.02202 -15.60198 -14.90426 -14.80504 -14.54536 -14.46848 -13.99444 -13.91986 -13.85614 -13.69021 -13.58735 -13.10744 -13.08636 -12.91548 -12.62484 -12.51399 -12.27352 -12.16296 -12.03459 -11.91459 -11.78876 -11.71376 -11.53199 -11.33775 -11.13158 -11.06809 -10.70534 -10.66970 -10.36179 -10.21537 -9.95088 -9.76119 -9.45173 -9.23974 -9.17419 -8.77482 -8.49097 -7.67881 -6.13269 -4.17480 0.91405 1.13548 1.25204 1.31106 2.38123 2.41339 2.61566 2.66481 2.71606 3.26098 3.34393 3.39109 3.44311 3.73188 3.92934 4.38070 4.38576 4.47148 4.60515 4.66665 4.69395 4.81775 4.86192 5.00088 5.05888 5.14293 5.21130 5.23510 5.25181 5.26770 5.31341 5.39420 5.53919 5.60643 5.72733 5.74983 5.84991 5.91161 5.95808 6.05422 6.09887 6.12245 6.20244 6.23995 6.30107 6.60030 6.70052 7.10648 7.41970 7.43637 7.47414 7.55356 7.82478 8.18041 8.87397 9.47478 10.97582 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.005532 B = 0.003599 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5060.402890 B = 7777.222088 C =12092.334228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.048 3.952 3 C -0.084 4.084 4 C -0.112 4.112 5 C -0.026 4.026 6 C 0.206 3.794 7 N -0.438 5.438 8 N -0.502 5.502 9 C 0.335 3.665 10 S -0.025 6.025 11 C -0.077 4.077 12 C 0.035 3.965 13 C -0.517 4.517 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.523 5.523 22 C 0.122 3.878 23 C -0.100 4.100 24 C -0.110 4.110 25 C -0.110 4.110 26 C -0.107 4.107 27 C -0.100 4.100 28 C 0.510 3.490 29 O -0.478 6.478 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 4.769 -22.126 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.050 4.050 3 C -0.123 4.123 4 C -0.151 4.151 5 C -0.066 4.066 6 C -0.111 4.111 7 N -0.115 5.115 8 N -0.232 5.232 9 C -0.047 4.047 10 S 0.208 5.792 11 C -0.225 4.225 12 C -0.005 4.005 13 C -0.558 4.558 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 N -0.250 5.250 22 C 0.032 3.968 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.120 4.120 28 C 0.296 3.704 29 O -0.347 6.347 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.150 0.850 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.037 5.122 -20.798 21.516 hybrid contribution -0.570 0.814 0.098 0.998 sum -2.606 5.936 -20.700 21.691 Atomic orbital electron populations 1.21672 0.89478 1.03231 1.03625 1.22181 0.98559 0.96069 0.88208 1.21363 1.01234 0.90703 0.98960 1.21519 1.02014 0.92327 0.99261 1.19324 1.02975 0.95101 0.89198 1.29192 0.93526 0.93626 0.94801 1.81250 1.09068 1.09821 1.11354 1.75882 1.16709 1.06892 1.23670 1.26051 0.96087 0.98608 0.83989 1.86293 1.61239 1.30012 1.01631 1.24056 1.04971 1.03998 0.89518 1.18990 0.96609 0.94387 0.90467 1.21064 1.32837 1.12189 0.89682 0.92053 1.24986 0.94878 0.94844 0.99392 1.69966 1.35105 1.18772 1.29120 0.86469 0.78377 0.79070 0.83746 1.19558 1.20864 1.20872 1.44126 1.48633 1.26414 1.05779 1.17539 0.94267 0.88163 0.96785 1.21125 0.93749 1.00262 0.96823 1.21027 0.99849 0.92835 0.99104 1.21277 0.96553 0.96381 0.98654 1.21063 0.95733 0.99367 0.96356 1.21236 1.00091 0.91686 0.98981 1.21796 0.77228 0.80598 0.90818 1.90737 1.57422 1.69331 1.17233 0.92165 0.89778 0.90881 0.91064 0.89829 0.90493 0.89133 0.87380 0.87479 0.89476 0.89473 0.95416 0.95410 0.92765 0.85827 0.85232 0.85414 0.85018 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.71 37.16 0.32 -0.91 16 2 C 0.05 0.56 0.99 -132.18 -0.13 0.43 16 3 C -0.08 -0.73 4.55 -26.73 -0.12 -0.85 16 4 C -0.11 -0.90 4.74 -26.73 -0.13 -1.03 16 5 C -0.03 -0.16 5.70 -29.52 -0.17 -0.33 16 6 C 0.21 2.14 15.43 -20.76 -0.32 1.82 16 7 N -0.44 -6.16 18.54 42.15 0.78 -5.38 16 8 N -0.50 -7.00 9.62 -48.68 -0.47 -7.47 16 9 C 0.33 4.86 7.77 -88.59 -0.69 4.17 16 10 S -0.03 -0.40 21.33 -107.50 -2.29 -2.69 16 11 C -0.08 -1.46 5.00 37.16 0.19 -1.28 16 12 C 0.03 0.83 4.98 -27.89 -0.14 0.69 16 13 C -0.52 -13.75 9.11 -34.44 -0.31 -14.06 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 17 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 N -0.52 -7.13 2.75 -59.88 -0.16 -7.29 16 22 C 0.12 1.57 5.01 -83.61 -0.42 1.15 16 23 C -0.10 -1.14 9.90 -39.40 -0.39 -1.53 16 24 C -0.11 -1.01 10.04 -39.61 -0.40 -1.41 16 25 C -0.11 -0.95 10.04 -39.55 -0.40 -1.34 16 26 C -0.11 -1.01 10.04 -39.61 -0.40 -1.40 16 27 C -0.10 -1.16 9.55 -39.40 -0.38 -1.54 16 28 C 0.51 6.87 6.94 -10.46 -0.07 6.80 16 29 O -0.48 -7.26 17.86 5.58 0.10 -7.16 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.77 6.49 -51.93 -0.34 0.43 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.59 6.53 -51.93 -0.34 0.25 16 36 H 0.09 0.96 7.67 -51.93 -0.40 0.56 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 48 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 426.65 15.07 6.43 6.43 Total: -1.00 -32.41 426.65 -10.90 -43.31 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.96 Total: -1.87 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -4.05 Total: -9.05 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.88 Total: -44.90 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.10 Total: -7.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.29 Total: -2.69 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -32.41 -10.90 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003026545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.040 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds