Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35865 * 116.99977 * 2 1 4 4 C 1.38848 * 119.92854 * 180.02562 * 3 2 1 5 5 C 1.37889 * 120.06768 * 179.97438 * 4 3 2 6 6 C 1.39423 * 119.93423 * 359.97438 * 5 4 3 7 7 C 1.48253 * 120.07333 * 179.97438 * 6 5 4 8 8 N 1.31387 * 126.51599 * 325.00581 * 7 6 5 9 9 N 1.39769 * 109.07848 * 179.97438 * 8 7 6 10 10 C 1.46501 * 125.15644 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.47192 * 304.97801 * 10 9 8 12 12 H 1.08001 * 119.99719 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99798 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00461 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99738 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46580 * 60.00788 * 15 13 11 17 17 H 1.48504 * 109.47027 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47329 * 300.00545 * 15 13 11 19 19 C 1.34135 * 109.68504 * 359.76398 * 9 8 7 20 20 C 1.37988 * 107.88960 * 0.37936 * 19 9 8 21 21 C 1.47260 * 126.81037 * 179.89396 * 20 19 9 22 22 O 1.21623 * 119.99864 * 127.67598 * 21 20 19 23 23 N 1.34776 * 120.00189 * 307.40617 * 21 20 19 24 24 C 1.47156 * 120.98074 * 4.10379 * 23 21 20 25 25 C 1.53713 * 108.16122 * 129.43641 * 24 23 21 26 26 O 1.42967 * 109.14781 * 52.53548 * 25 24 23 27 27 C 1.42967 * 114.16928 * 297.29488 * 26 25 24 28 28 C 1.47151 * 120.98148 * 184.39419 * 23 21 20 29 29 C 1.39427 * 119.86013 * 0.27698 * 6 5 4 30 30 C 1.37899 * 119.92285 * 359.46609 * 29 6 5 31 31 H 1.09005 * 109.47042 * 59.99674 * 1 2 3 32 32 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47167 * 300.00286 * 1 2 3 34 34 H 1.07998 * 119.96441 * 359.97438 * 4 3 2 35 35 H 1.08008 * 120.03457 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47073 * 64.97535 * 10 9 8 37 37 H 1.09001 * 109.47085 * 184.97805 * 10 9 8 38 38 H 0.96996 * 120.00589 * 179.97438 * 14 13 11 39 39 H 1.07997 * 126.05657 * 180.23731 * 19 9 8 40 40 H 1.09001 * 109.67772 * 249.21316 * 24 23 21 41 41 H 1.08993 * 109.68005 * 9.77166 * 24 23 21 42 42 H 1.08995 * 109.65560 * 292.57637 * 25 24 23 43 43 H 1.08995 * 109.48558 * 172.39695 * 25 24 23 44 44 H 1.09000 * 109.50706 * 302.65297 * 27 26 25 45 45 H 1.09001 * 109.55086 * 182.52948 * 27 26 25 46 46 H 1.09002 * 109.68586 * 350.22791 * 28 23 21 47 47 H 1.09000 * 109.68447 * 110.75197 * 28 23 21 48 48 H 1.07993 * 120.03464 * 179.70248 * 29 6 5 49 49 H 1.08006 * 119.95874 * 180.25559 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 3.4325 1.2815 -0.0005 5 6 4.0615 2.5086 -0.0011 6 6 3.3036 3.6789 -0.0016 7 6 3.9767 4.9998 -0.0016 8 7 5.1021 5.3038 0.6043 9 7 5.4022 6.6475 0.3635 10 6 6.5797 7.3536 0.8745 11 6 6.6349 7.2183 2.3745 12 1 5.8697 6.6616 2.8950 13 6 7.6630 7.8043 3.0820 14 7 8.5951 8.4817 2.4482 15 14 7.7310 7.6372 4.9413 16 1 7.8178 6.2003 5.3062 17 1 8.9247 8.3529 5.4593 18 1 6.5045 8.2259 5.5366 19 6 4.4509 7.1912 -0.4102 20 6 3.5132 6.2150 -0.6783 21 6 2.2926 6.3628 -1.4886 22 8 2.0671 5.5850 -2.3960 23 7 1.4224 7.3567 -1.2213 24 6 1.7132 8.3595 -0.1843 25 6 1.5051 9.7546 -0.7951 26 8 0.2072 9.8166 -1.3914 27 6 0.0163 8.9030 -2.4743 28 6 0.1508 7.4675 -1.9533 29 6 1.9114 3.6043 0.0042 30 6 1.2884 2.3740 -0.0006 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 4.0190 0.3747 -0.0005 35 1 5.1402 2.5632 -0.0019 36 1 7.4802 6.9221 0.4374 37 1 6.5154 8.4083 0.6069 38 1 9.3181 8.8943 2.9460 39 1 4.4225 8.2128 -0.7594 40 1 1.0379 8.2209 0.6600 41 1 2.7455 8.2539 0.1493 42 1 2.2641 9.9389 -1.5554 43 1 1.5827 10.5094 -0.0126 44 1 0.7699 9.0842 -3.2406 45 1 -0.9772 9.0443 -2.9000 46 1 0.1479 6.7710 -2.7917 47 1 -0.6791 7.2401 -1.2842 48 1 1.3216 4.5089 0.0087 49 1 0.2099 2.3156 -0.0003 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = -5.889299 kcal Electronic energy + Delta-G solvation = -33874.560805 eV Core-core repulsion = 29383.173271 eV Total energy + Delta-G solvation = -4491.387535 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90448 -39.97866 -39.68573 -38.01487 -37.33247 -34.69140 -33.85292 -32.18560 -31.84600 -31.07700 -30.14412 -29.56492 -28.01691 -27.58688 -26.66669 -24.30482 -23.64060 -23.25461 -22.51245 -21.83802 -20.86874 -19.80285 -19.02482 -18.12215 -17.31131 -16.66934 -16.63849 -16.34539 -16.04365 -15.79871 -15.73313 -15.35374 -15.27337 -15.06656 -14.66487 -14.44608 -14.38002 -13.96373 -13.82897 -13.61239 -13.49775 -13.16708 -12.78033 -12.67657 -12.55614 -12.30294 -12.07633 -11.95272 -11.85282 -11.60670 -11.57426 -11.25167 -11.08126 -10.92279 -10.86914 -10.80874 -10.39705 -10.37772 -10.25736 -9.86679 -9.63890 -9.06232 -8.89723 -8.74135 -8.60973 -8.15190 -7.62585 -6.37167 -4.43517 1.28053 1.48791 2.12610 2.73311 2.85112 3.18383 3.19057 3.22624 3.23002 3.29014 3.33044 3.63611 4.01775 4.21253 4.55339 4.61913 4.78426 4.80294 4.84180 4.91623 4.93912 4.99368 5.00241 5.02027 5.06776 5.12507 5.28446 5.29925 5.36532 5.43342 5.45077 5.47616 5.60328 5.64854 5.70016 5.74222 5.81771 5.94500 6.12662 6.23451 6.34835 6.42850 6.56996 6.75016 6.79996 6.83942 6.88149 7.01682 7.37850 7.39653 7.49140 7.68761 7.70451 8.27590 8.35671 8.63771 9.23417 10.71712 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.005694 B = 0.003744 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4916.150914 B = 7476.995278 C =11438.216520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.152 4.152 5 C -0.051 4.051 6 C -0.032 4.032 7 C 0.132 3.868 8 N -0.256 5.256 9 N -0.309 5.309 10 C 0.251 3.749 11 C -0.534 4.534 12 H 0.070 0.930 13 C 0.066 3.934 14 N -0.893 5.893 15 Si 0.908 3.092 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.088 3.912 20 C -0.307 4.307 21 C 0.608 3.392 22 O -0.537 6.537 23 N -0.618 5.618 24 C 0.067 3.933 25 C 0.047 3.953 26 O -0.381 6.381 27 C 0.048 3.952 28 C 0.079 3.921 29 C -0.044 4.044 30 C -0.207 4.207 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.270 0.730 39 H 0.175 0.825 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.119 0.881 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 -4.030 -7.184 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.171 4.171 5 C -0.070 4.070 6 C -0.034 4.034 7 C -0.034 4.034 8 N -0.078 5.078 9 N -0.086 5.086 10 C 0.134 3.866 11 C -0.572 4.572 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.735 3.265 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.065 4.065 20 C -0.323 4.323 21 C 0.398 3.602 22 O -0.413 6.413 23 N -0.354 5.354 24 C -0.057 4.057 25 C -0.031 4.031 26 O -0.300 6.300 27 C -0.029 4.029 28 C -0.044 4.044 29 C -0.064 4.064 30 C -0.226 4.226 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.192 0.808 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.091 0.909 48 H 0.137 0.863 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.290 -4.732 -6.775 18.266 hybrid contribution -0.467 0.557 0.449 0.854 sum -16.758 -4.176 -6.326 18.392 Atomic orbital electron populations 1.23029 0.78679 1.03641 1.01413 1.86041 1.21188 1.27170 1.88848 1.19067 0.92331 0.83899 0.96656 1.20298 0.91157 0.98439 1.07211 1.21055 1.00318 0.90254 0.95357 1.17600 0.92183 0.89292 1.04345 1.21521 0.93044 0.91902 0.96932 1.77449 1.14716 0.94279 1.21329 1.49204 1.19366 1.06617 1.33409 1.19926 0.79302 0.91152 0.96186 1.21145 1.11260 1.34949 0.89862 0.91145 1.24921 0.94754 0.94434 0.99664 1.69893 1.12872 1.33698 1.36593 0.86373 0.77641 0.78729 0.83738 1.19770 1.20967 1.19946 1.22743 0.90397 0.98394 0.94943 1.20780 1.01158 0.94543 1.15820 1.17374 0.81660 0.79145 0.82030 1.90748 1.76613 1.43273 1.30693 1.48047 1.19458 1.29152 1.38715 1.22687 1.04451 0.87726 0.90805 1.23101 0.85190 0.96720 0.98041 1.87952 1.32891 1.59735 1.49385 1.22978 1.02528 0.88321 0.89120 1.22227 0.85837 0.98145 0.98180 1.20773 0.93140 0.96957 0.95482 1.21015 0.99756 0.91959 1.09857 0.92657 0.88463 0.92696 0.84991 0.84608 0.93154 0.92385 0.92081 0.80801 0.90577 0.87573 0.92464 0.87427 0.92617 0.87846 0.88100 0.90929 0.86315 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.95 10.49 -19.31 -0.20 -4.16 16 3 C 0.13 1.75 6.69 -39.14 -0.26 1.49 16 4 C -0.15 -2.19 9.97 -39.48 -0.39 -2.58 16 5 C -0.05 -0.82 9.75 -39.27 -0.38 -1.20 16 6 C -0.03 -0.56 5.84 -104.90 -0.61 -1.17 16 7 C 0.13 2.57 6.93 -80.57 -0.56 2.02 16 8 N -0.26 -5.56 12.27 34.57 0.42 -5.14 16 9 N -0.31 -6.46 3.62 -62.03 -0.22 -6.69 16 10 C 0.25 5.83 6.21 -5.19 -0.03 5.79 16 11 C -0.53 -13.83 9.21 -34.44 -0.32 -14.15 16 12 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 15 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 19 C 0.09 1.52 9.14 -16.64 -0.15 1.37 16 20 C -0.31 -5.45 5.36 -102.95 -0.55 -6.00 16 21 C 0.61 9.95 5.90 -12.59 -0.07 9.87 16 22 O -0.54 -10.13 16.20 5.26 0.09 -10.04 16 23 N -0.62 -8.06 3.01 -173.35 -0.52 -8.58 16 24 C 0.07 0.76 6.49 -3.31 -0.02 0.74 16 25 C 0.05 0.46 7.00 37.53 0.26 0.72 16 26 O -0.38 -4.14 10.74 -35.23 -0.38 -4.52 16 27 C 0.05 0.44 6.99 37.31 0.26 0.70 16 28 C 0.08 0.84 6.65 -3.53 -0.02 0.82 16 29 C -0.04 -0.69 8.85 -39.26 -0.35 -1.04 16 30 C -0.21 -2.83 9.02 -39.49 -0.36 -3.18 16 31 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.14 2.14 8.06 -52.48 -0.42 1.72 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.18 2.35 7.52 -52.49 -0.39 1.95 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.11 1.32 4.20 -51.93 -0.22 1.10 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 1.14 7.06 -51.93 -0.37 0.77 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.12 1.84 6.87 -52.49 -0.36 1.48 16 49 H 0.13 1.38 6.28 -52.48 -0.33 1.05 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -31.98 408.40 -8.27 -40.25 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.66 Total: 3.52 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.67 Total: -2.95 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.41 Total: -43.64 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.50 Total: -18.72 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.98 -8.27 -40.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.362 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds