Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33341 * 122.70666 * 2 1 4 4 S 1.76162 * 108.10279 * 179.97438 * 3 2 1 5 5 C 1.70963 * 90.36181 * 0.02562 * 4 3 2 6 6 S 1.76197 * 124.95488 * 180.26728 * 5 4 3 7 7 C 1.80994 * 100.00068 * 359.69476 * 6 5 4 8 8 C 1.50702 * 109.47095 * 180.02562 * 7 6 5 9 9 O 1.21392 * 120.00175 * 0.02562 * 8 7 6 10 10 C 1.41733 * 119.99875 * 179.97438 * 8 7 6 11 11 C 1.37859 * 126.90971 * 0.03145 * 10 8 7 12 12 N 1.34675 * 109.61839 * 179.97438 * 11 10 8 13 13 C 1.46497 * 124.64698 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47515 * 265.02842 * 13 12 11 15 15 H 1.08001 * 119.99647 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00042 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00465 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99940 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46916 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46961 * 119.99800 * 18 16 14 21 21 H 1.48496 * 109.47355 * 239.99789 * 18 16 14 22 22 C 1.38019 * 110.71010 * 359.97438 * 12 11 10 23 23 C 1.39139 * 133.04117 * 180.02562 * 22 12 11 24 24 C 1.37773 * 119.95175 * 179.97438 * 23 22 12 25 25 C 1.38732 * 120.63515 * 0.02562 * 24 23 22 26 26 C 1.37797 * 120.26695 * 0.02562 * 25 24 23 27 27 C 1.39196 * 119.67329 * 359.64910 * 26 25 24 28 28 N 1.29764 * 110.09185 * 359.97438 * 5 4 3 29 29 H 1.09005 * 109.46788 * 270.01653 * 1 2 3 30 30 H 1.08998 * 109.46767 * 30.01396 * 1 2 3 31 31 H 1.09001 * 109.47240 * 150.01620 * 1 2 3 32 32 H 1.07998 * 125.94960 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46867 * 299.99973 * 7 6 5 34 34 H 1.08998 * 109.47309 * 59.99932 * 7 6 5 35 35 H 1.08001 * 125.19189 * 359.95858 * 11 10 8 36 36 H 1.09008 * 109.47127 * 25.02582 * 13 12 11 37 37 H 1.09000 * 109.47143 * 145.02265 * 13 12 11 38 38 H 0.96994 * 120.00044 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.02645 * 359.97438 * 23 22 12 40 40 H 1.07995 * 119.68692 * 179.97438 * 24 23 22 41 41 H 1.07991 * 119.86660 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.16661 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1220 0.0000 4 16 3.9322 0.6778 0.0007 5 6 3.5116 -0.9793 0.0002 6 16 4.6630 -2.3130 0.0073 7 6 6.2176 -1.3862 0.0047 8 6 7.3766 -2.3494 0.0095 9 8 7.1716 -3.5458 0.0137 10 6 8.7062 -1.8583 0.0079 11 6 9.1008 -0.5374 0.0029 12 7 10.4458 -0.4673 0.0035 13 6 11.2148 0.7796 -0.0015 14 6 11.5844 1.1363 -1.4182 15 1 11.2774 0.4977 -2.2334 16 6 12.3142 2.2777 -1.6737 17 7 12.6875 3.0555 -0.6812 18 14 12.7729 2.7194 -3.4299 19 1 12.2366 1.6896 -4.3555 20 1 12.1948 4.0432 -3.7745 21 1 14.2514 2.7771 -3.5558 22 6 11.0004 -1.7312 0.0096 23 6 12.3132 -2.1921 0.0130 24 6 12.5667 -3.5463 0.0197 25 6 11.5234 -4.4608 0.0224 26 6 10.2166 -4.0237 0.0180 27 6 9.9468 -2.6582 0.0182 28 7 2.2207 -1.1115 0.0001 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.8344 2.1279 -0.0004 33 1 6.2674 -0.7628 -0.8880 34 1 6.2657 -0.7548 0.8919 35 1 8.4334 0.3117 -0.0012 36 1 10.6126 1.5796 0.4293 37 1 12.1218 0.6494 0.5889 38 1 13.2013 3.8583 -0.8610 39 1 13.1329 -1.4889 0.0105 40 1 13.5873 -3.8994 0.0219 41 1 11.7364 -5.5195 0.0280 42 1 9.4057 -4.7371 0.0197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006534310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = 48.669050 kcal Electronic energy + Delta-G solvation = -26857.698474 eV Core-core repulsion = 23020.630752 eV Total energy + Delta-G solvation = -3837.067722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 372.071 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.48104 -40.69640 -39.96165 -38.08392 -35.47051 -33.66508 -32.99078 -31.94287 -31.22680 -29.67656 -28.71535 -28.56346 -26.25239 -25.47143 -24.07433 -23.15258 -21.93452 -21.00885 -19.98227 -19.47121 -18.84857 -18.10815 -17.86390 -17.31284 -16.82880 -16.64469 -16.40684 -16.12178 -15.97149 -15.71227 -15.53295 -15.33623 -14.81407 -14.77034 -14.42256 -14.28637 -14.14915 -13.86276 -13.60313 -13.48198 -13.43764 -13.33881 -13.10101 -12.75519 -12.54749 -12.47754 -12.34458 -12.31571 -11.85902 -11.82171 -11.58051 -10.87340 -10.86006 -10.75585 -10.63459 -10.53184 -10.19579 -9.20128 -8.73044 -8.63841 -8.32744 -6.53019 -0.46149 -0.10604 -0.08514 0.02022 0.53676 0.66976 0.89988 1.21440 1.35715 1.40354 1.50190 1.65900 1.98020 2.18738 2.33962 2.95846 2.98680 3.01898 3.46879 3.74894 3.79773 3.90751 4.04104 4.15373 4.23179 4.24159 4.33025 4.33294 4.56526 4.67327 4.69779 4.76669 4.80474 4.86276 4.86991 4.90556 4.94666 5.18337 5.31357 5.52705 5.55028 5.67027 5.73603 5.76555 5.90813 6.22240 6.30241 6.56891 6.58855 6.64632 7.19730 8.69756 Molecular weight = 372.07amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.002615 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.653103 B =10703.835025 C =13455.933331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.055 3.945 3 C -0.256 4.256 4 S 0.159 5.841 5 C -0.011 4.011 6 S 0.036 5.964 7 C -0.183 4.183 8 C 0.459 3.541 9 O -0.497 6.497 10 C -0.317 4.317 11 C 0.165 3.835 12 N -0.435 5.435 13 C 0.241 3.759 14 C -0.554 4.554 15 H 0.054 0.946 16 C 0.029 3.971 17 N -0.915 5.915 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.277 1.277 22 C 0.057 3.943 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.130 4.130 26 C -0.098 4.098 27 C -0.078 4.078 28 N -0.487 5.487 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.210 0.790 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.212 0.788 36 H 0.054 0.946 37 H 0.032 0.968 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -2.934 2.569 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.399 4.399 4 S 0.409 5.591 5 C -0.396 4.396 6 S 0.269 5.731 7 C -0.333 4.333 8 C 0.341 3.659 9 O -0.378 6.378 10 C -0.327 4.327 11 C 0.024 3.976 12 N -0.109 5.109 13 C 0.123 3.877 14 C -0.592 4.592 15 H 0.072 0.928 16 C -0.173 4.173 17 N -0.553 5.553 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.203 1.203 22 C -0.047 4.047 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.149 4.149 26 C -0.116 4.116 27 C -0.081 4.081 28 N -0.208 5.208 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.227 0.773 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.171 0.829 41 H 0.171 0.829 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.382 -4.304 2.631 15.241 hybrid contribution -0.149 2.001 -0.784 2.154 sum -14.531 -2.303 1.848 14.828 Atomic orbital electron populations 1.20471 0.84778 1.04316 1.03938 1.20903 0.99797 0.85954 1.01190 1.27127 0.94242 1.05129 1.13365 1.83950 1.08622 0.98302 1.68196 1.28766 0.99173 1.02622 1.09011 1.86544 0.93183 1.02503 1.90850 1.24525 0.94305 1.03805 1.10626 1.19106 0.87167 0.88073 0.71513 1.90538 1.87289 1.18594 1.41338 1.19446 0.93107 0.92582 1.27571 1.23135 0.84252 0.98273 0.91935 1.44498 1.06254 1.06765 1.53396 1.19564 0.91671 0.78716 0.97797 1.21462 1.36477 1.08883 0.92373 0.92752 1.25602 0.94795 0.95510 1.01403 1.69982 1.37599 1.14745 1.32938 0.85446 0.78158 0.78339 0.79438 1.19720 1.19715 1.20292 1.18651 0.95214 0.84154 1.06643 1.20398 0.93036 0.96984 1.03832 1.21114 1.00652 0.90916 1.00291 1.21281 0.91369 1.00828 1.01403 1.20706 0.97645 0.93014 1.00251 1.19145 0.91459 0.93565 1.03966 1.66480 1.03200 1.32811 1.18272 0.89584 0.88134 0.91197 0.77281 0.83836 0.83460 0.77158 0.92780 0.95039 0.91818 0.86639 0.82890 0.82904 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.31 71.24 0.73 -0.25 16 2 C 0.06 1.11 6.74 41.41 0.28 1.39 16 3 C -0.26 -4.20 11.10 66.71 0.74 -3.46 16 4 S 0.16 2.94 21.54 -56.49 -1.22 1.72 16 5 C -0.01 -0.27 7.59 130.55 0.99 0.73 16 6 S 0.04 0.97 21.45 -56.49 -1.21 -0.25 16 7 C -0.18 -4.10 4.40 71.24 0.31 -3.78 16 8 C 0.46 13.84 6.97 26.55 0.19 14.02 16 9 O -0.50 -17.79 15.50 -3.38 -0.05 -17.84 16 10 C -0.32 -10.46 6.11 -20.03 -0.12 -10.58 16 11 C 0.17 5.19 10.71 84.17 0.90 6.09 16 12 N -0.43 -16.79 2.70 -518.64 -1.40 -18.20 16 13 C 0.24 10.63 5.68 85.63 0.49 11.12 16 14 C -0.55 -27.16 9.39 25.60 0.24 -26.92 16 15 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 16 C 0.03 1.42 5.46 84.65 0.46 1.88 16 17 N -0.91 -47.29 13.29 21.45 0.28 -47.00 16 18 Si 0.96 39.70 29.54 68.60 2.03 41.73 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 22 C 0.06 2.22 6.78 38.90 0.26 2.48 16 23 C -0.12 -4.40 9.96 22.38 0.22 -4.18 16 24 C -0.11 -3.21 10.01 22.28 0.22 -2.99 16 25 C -0.13 -3.66 10.03 22.28 0.22 -3.44 16 26 C -0.10 -3.25 9.80 22.40 0.22 -3.03 16 27 C -0.08 -2.87 6.24 -20.06 -0.13 -3.00 16 28 N -0.49 -12.93 10.59 -188.53 -2.00 -14.93 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.10 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.21 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.14 2.65 7.98 -2.40 -0.02 2.63 16 34 H 0.15 2.56 7.97 -2.40 -0.02 2.54 16 35 H 0.21 4.69 7.91 -2.91 -0.02 4.67 16 36 H 0.05 2.35 8.10 -2.38 -0.02 2.34 16 37 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 39 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.13 4.11 7.38 -2.91 -0.02 4.09 16 Total: -1.00 -65.43 393.42 3.72 -61.70 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.05 Total: 16.98 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 6.24 Total: -23.92 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.11 Total: -80.13 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.05 Total: -17.84 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -2.43 Total: 1.48 kcal Total: -65.43 3.72 -61.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006534310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.372 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds