Wall clock time and date at job start Tue Mar 31 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38368 * 119.84949 * 2 1 4 4 C 1.37946 * 120.15255 * 179.97438 * 3 2 1 5 5 C 1.39627 * 119.84258 * 0.02562 * 4 3 2 6 6 C 1.47751 * 120.14439 * 179.97438 * 5 4 3 7 7 N 1.31523 * 126.45834 * 345.04626 * 6 5 4 8 8 N 1.28501 * 110.00987 * 179.97438 * 7 6 5 9 9 C 1.31599 * 110.08435 * 359.75755 * 8 7 6 10 10 S 1.76198 * 126.40919 * 180.26874 * 9 8 7 11 11 C 1.76205 * 99.99662 * 0.13246 * 10 9 8 12 12 H 1.07997 * 120.00383 * 0.02562 * 11 10 9 13 13 C 1.38649 * 119.99514 * 179.97438 * 11 10 9 14 14 N 1.31646 * 119.99693 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00390 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47213 * 89.99878 * 15 13 11 17 17 H 1.48495 * 109.47348 * 210.00146 * 15 13 11 18 18 H 1.48508 * 109.47019 * 330.00079 * 15 13 11 19 19 N 1.36970 * 107.18360 * 0.38050 * 9 8 7 20 20 C 1.40168 * 127.18026 * 179.89864 * 19 9 8 21 21 C 1.38846 * 120.05404 * 294.68224 * 20 19 9 22 22 C 1.38113 * 119.94490 * 179.97438 * 21 20 19 23 23 C 1.38383 * 120.05339 * 0.26208 * 22 21 20 24 24 Cl 1.73603 * 119.94765 * 179.72048 * 23 22 21 25 25 C 1.38393 * 120.10817 * 359.48358 * 23 22 21 26 26 C 1.38103 * 120.05631 * 0.51397 * 25 23 22 27 27 C 1.39628 * 119.70608 * 0.25179 * 5 4 3 28 28 C 1.37936 * 119.84560 * 359.48951 * 27 5 4 29 29 H 1.09000 * 109.47346 * 89.99524 * 1 2 3 30 30 H 1.09001 * 109.47092 * 209.99786 * 1 2 3 31 31 H 1.08997 * 109.47529 * 329.99588 * 1 2 3 32 32 H 1.08001 * 119.92513 * 359.96296 * 3 2 1 33 33 H 1.07995 * 120.08085 * 180.02562 * 4 3 2 34 34 H 0.97003 * 120.00000 * 180.02562 * 14 13 11 35 35 H 1.07999 * 120.02710 * 359.96061 * 21 20 19 36 36 H 1.08002 * 119.96953 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.96857 * 180.24242 * 25 23 22 38 38 H 1.07996 * 120.03019 * 179.76956 * 26 25 23 39 39 H 1.07997 * 120.07444 * 179.72339 * 27 5 4 40 40 H 1.08008 * 119.92577 * 180.23236 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5751 1.2074 0.0005 5 6 4.2763 0.0000 0.0005 6 6 5.7538 0.0000 0.0005 7 7 6.5353 1.0220 -0.2724 8 7 7.7678 0.6707 -0.1780 9 6 7.8512 -0.5967 0.1663 10 16 9.3328 -1.5157 0.4216 11 6 10.5292 -0.2651 0.0911 12 1 10.2094 0.7306 -0.1783 13 6 11.8814 -0.5591 0.1780 14 7 12.7753 0.3753 -0.0684 15 14 12.4347 -2.2811 0.6447 16 1 12.5891 -3.1014 -0.5836 17 1 13.7355 -2.2071 1.3572 18 1 11.4193 -2.9040 1.5315 19 7 6.5710 -1.0685 0.2866 20 6 6.1762 -2.3677 0.6346 21 6 6.4675 -3.4321 -0.2079 22 6 6.0780 -4.7114 0.1374 23 6 5.3930 -4.9319 1.3195 24 17 4.8983 -6.5400 1.7474 25 6 5.1061 -3.8733 2.1634 26 6 5.4936 -2.5923 1.8226 27 6 3.5750 -1.2074 -0.0053 28 6 2.1957 -1.2002 -0.0004 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6520 2.1333 -0.0006 33 1 4.1114 2.1448 0.0010 34 1 13.7213 0.1695 -0.0080 35 1 6.9982 -3.2599 -1.1327 36 1 6.3040 -5.5396 -0.5178 37 1 4.5748 -4.0485 3.0873 38 1 5.2662 -1.7660 2.4797 39 1 4.1114 -2.1448 -0.0099 40 1 1.6520 -2.1334 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006654215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:18 Heat of formation + Delta-G solvation = 120.755047 kcal Electronic energy + Delta-G solvation = -27472.615256 eV Core-core repulsion = 23598.515278 eV Total energy + Delta-G solvation = -3874.099977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 371.055 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48280 -39.64741 -39.19725 -36.87697 -34.57418 -33.44553 -32.69110 -31.54336 -31.03119 -30.00568 -29.62534 -26.91893 -25.82478 -23.95384 -23.46888 -22.84206 -22.14338 -21.50160 -20.47983 -18.84301 -17.62360 -17.04874 -16.38388 -16.24791 -15.72227 -15.51269 -15.20441 -14.96220 -14.83707 -14.61709 -13.99287 -13.90285 -13.88246 -13.54368 -13.43879 -13.09245 -12.74760 -12.45940 -12.33803 -12.08779 -12.00359 -11.91939 -11.46342 -11.31973 -11.25163 -11.18631 -11.11254 -11.00118 -10.32350 -10.18546 -10.09648 -10.03464 -9.45360 -9.22815 -9.10651 -9.05934 -8.82762 -8.40607 -7.12489 -6.48538 -4.29648 0.52827 0.85460 0.90220 1.31311 1.76338 1.99257 2.23633 2.82014 3.07493 3.14229 3.16466 3.22916 3.27042 3.81531 4.01494 4.25259 4.36544 4.44551 4.49912 4.66175 4.72273 4.84239 4.89355 4.89786 4.96969 5.04087 5.20556 5.28623 5.36012 5.46133 5.53824 5.56599 5.62565 5.74154 5.78270 5.83486 5.88651 5.98508 6.09124 6.20397 6.24384 6.42962 6.45733 6.53623 6.82904 7.20247 7.76884 8.56192 8.89274 9.15847 10.60327 Molecular weight = 371.06amu Principal moments of inertia in cm(-1) A = 0.008059 B = 0.003734 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.433527 B = 7495.899957 C =10697.551305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.077 4.077 5 C -0.003 4.003 6 C 0.187 3.813 7 N -0.262 5.262 8 N -0.283 5.283 9 C 0.199 3.801 10 S 0.072 5.928 11 C -0.529 4.529 12 H 0.123 0.877 13 C 0.103 3.897 14 N -0.858 5.858 15 Si 0.841 3.159 16 H -0.261 1.261 17 H -0.263 1.263 18 H -0.239 1.239 19 N -0.439 5.439 20 C 0.135 3.865 21 C -0.090 4.090 22 C -0.095 4.095 23 C -0.028 4.028 24 Cl -0.065 7.065 25 C -0.098 4.098 26 C -0.090 4.090 27 C -0.110 4.110 28 C -0.116 4.116 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.276 0.724 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.655 -10.927 2.916 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.097 4.097 5 C -0.005 4.005 6 C -0.078 4.078 7 N -0.102 5.102 8 N -0.128 5.128 9 C -0.170 4.170 10 S 0.305 5.695 11 C -0.678 4.678 12 H 0.140 0.860 13 C -0.108 4.108 14 N -0.492 5.492 15 Si 0.664 3.336 16 H -0.186 1.186 17 H -0.187 1.187 18 H -0.163 1.163 19 N -0.134 5.134 20 C 0.043 3.957 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.055 4.055 24 Cl -0.036 7.036 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.130 4.130 28 C -0.134 4.134 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.709 -10.675 2.849 24.359 hybrid contribution 0.123 -0.759 0.191 0.792 sum -21.586 -11.434 3.040 24.616 Atomic orbital electron populations 1.20798 0.91164 1.02755 1.02339 1.20024 0.96097 0.93154 0.99270 1.20958 0.93632 0.97688 1.01371 1.21212 0.93786 0.97489 0.97256 1.17468 0.85922 0.94284 1.02863 1.22778 0.92725 0.84233 1.08015 1.74330 0.97180 1.22473 1.16176 1.74910 1.09657 1.07851 1.20342 1.27817 0.90020 0.95956 1.03174 1.82948 0.89471 1.15190 1.81880 1.22559 0.90845 0.99433 1.54926 0.85954 1.24650 0.95254 0.97357 0.93547 1.69913 1.01776 1.32746 1.44766 0.87034 0.81220 0.84622 0.80679 1.18555 1.18743 1.16335 1.43721 1.05694 1.08232 1.55710 1.17582 1.00317 0.82814 0.94968 1.21265 0.98879 0.91016 0.99786 1.20952 0.97618 0.97130 0.95744 1.21013 1.01331 0.86531 0.96602 1.98382 1.90021 1.22130 1.93040 1.20903 1.00581 0.90379 0.99866 1.21172 0.97609 0.97532 0.94653 1.21414 0.94525 0.97230 0.99792 1.20846 0.93430 0.97625 1.01540 0.91131 0.91573 0.91490 0.85533 0.84598 0.91368 0.83731 0.83718 0.83875 0.84262 0.85744 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.00 36.00 0.36 -0.40 16 2 C -0.08 -0.81 5.89 -104.53 -0.62 -1.43 16 3 C -0.12 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.08 -1.03 9.70 -39.17 -0.38 -1.41 16 5 C 0.00 -0.04 5.87 -104.97 -0.62 -0.65 16 6 C 0.19 3.50 7.68 -153.63 -1.18 2.33 16 7 N -0.26 -5.81 11.97 32.60 0.39 -5.42 16 8 N -0.28 -7.06 11.03 30.82 0.34 -6.72 16 9 C 0.20 4.49 8.00 -87.67 -0.70 3.79 16 10 S 0.07 1.67 19.55 -107.50 -2.10 -0.43 16 11 C -0.53 -14.86 9.91 30.88 0.31 -14.55 16 12 H 0.12 3.85 7.15 -52.49 -0.38 3.47 16 13 C 0.10 2.84 5.50 -17.48 -0.10 2.75 16 14 N -0.86 -24.89 13.97 55.48 0.77 -24.12 16 15 Si 0.84 19.20 27.73 -169.99 -4.71 14.48 16 16 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.24 -5.18 6.74 56.52 0.38 -4.80 16 19 N -0.44 -8.13 2.86 -58.10 -0.17 -8.30 16 20 C 0.14 1.98 3.43 -83.59 -0.29 1.69 16 21 C -0.09 -1.16 9.83 -39.40 -0.39 -1.54 16 22 C -0.10 -0.99 9.82 -39.57 -0.39 -1.37 16 23 C -0.03 -0.28 6.32 -39.47 -0.25 -0.53 16 24 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 25 C -0.10 -0.96 9.82 -39.57 -0.39 -1.35 16 26 C -0.09 -1.09 8.03 -39.41 -0.32 -1.41 16 27 C -0.11 -1.37 8.50 -39.17 -0.33 -1.70 16 28 C -0.12 -1.19 9.68 -39.64 -0.38 -1.57 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.85 7.94 -52.49 -0.42 1.43 16 34 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.12 1.53 4.70 -52.49 -0.25 1.28 16 40 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -31.82 375.44 -11.35 -43.17 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.99 Total: 2.74 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -6.04 Total: -18.99 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 1.34 Total: -44.56 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.10 Total: -0.43 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.82 -11.35 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006654215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.929 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds