Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 110.65861 * 2 1 4 4 C 1.38253 * 119.92608 * 271.46289 * 3 2 1 5 5 C 1.38235 * 120.13962 * 179.97438 * 4 3 2 6 6 C 1.38544 * 120.03355 * 0.02562 * 5 4 3 7 7 C 1.39271 * 119.82580 * 359.97438 * 6 5 4 8 8 C 1.38241 * 119.92747 * 91.17866 * 3 2 1 9 9 O 1.36499 * 108.64216 * 179.97438 * 7 6 5 10 10 C 1.43988 * 105.48314 * 342.72072 * 9 7 6 11 11 O 1.36502 * 131.53675 * 179.97438 * 6 5 4 12 12 N 1.47317 * 110.59660 * 122.91382 * 2 1 3 13 13 C 1.34527 * 106.61579 * 118.75423 * 12 2 1 14 14 O 1.21542 * 123.76861 * 179.76750 * 13 12 2 15 15 N 1.33785 * 112.46096 * 359.60545 * 13 12 2 16 16 C 1.46504 * 124.17976 * 180.13940 * 15 13 12 17 17 C 1.52998 * 109.47172 * 270.30611 * 16 15 13 18 18 H 1.09001 * 109.47217 * 55.00209 * 17 16 15 19 19 C 1.47198 * 109.47244 * 294.99929 * 17 16 15 20 20 N 4.63138 * 135.48674 * 266.70447 * 2 1 3 21 21 C 1.52997 * 109.47176 * 174.99804 * 17 16 15 22 22 C 1.50700 * 109.47462 * 185.00164 * 21 17 16 23 23 H 1.08004 * 119.99868 * 0.02562 * 22 21 17 24 24 C 1.37879 * 120.00285 * 180.02562 * 22 21 17 25 25 N 1.31514 * 120.00020 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00078 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47470 * 89.99649 * 26 24 22 28 28 H 1.48505 * 109.46995 * 209.99880 * 26 24 22 29 29 H 1.48505 * 109.46843 * 329.99299 * 26 24 22 30 30 C 1.34771 * 111.64603 * 0.41435 * 15 13 12 31 31 O 1.21225 * 127.16082 * 179.72976 * 30 15 13 32 32 H 1.09004 * 109.47012 * 297.78516 * 1 2 3 33 33 H 1.09001 * 109.46616 * 57.78694 * 1 2 3 34 34 H 1.08996 * 109.46831 * 177.78679 * 1 2 3 35 35 H 1.07995 * 119.92958 * 359.94862 * 4 3 2 36 36 H 1.07997 * 119.98519 * 179.97438 * 5 4 3 37 37 H 1.07995 * 119.98344 * 0.02562 * 8 3 2 38 38 H 1.09003 * 110.57303 * 268.55196 * 10 9 7 39 39 H 1.09002 * 110.69775 * 145.74273 * 10 9 7 40 40 H 0.97001 * 126.68790 * 298.48341 * 12 2 1 41 41 H 1.09000 * 109.46960 * 30.30810 * 16 15 13 42 42 H 1.08998 * 109.46918 * 150.30893 * 16 15 13 43 43 H 1.09003 * 109.47085 * 305.00244 * 21 17 16 44 44 H 1.09001 * 109.47308 * 64.99885 * 21 17 16 45 45 H 0.96993 * 120.00450 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0617 1.4101 0.0000 4 6 2.2764 2.0663 -1.1978 5 6 2.7635 3.3600 -1.2029 6 6 3.0383 4.0022 -0.0065 7 6 2.8220 3.3412 1.2001 8 6 2.3281 2.0468 1.1978 9 8 3.1656 4.1769 2.2232 10 6 3.9776 5.2041 1.6242 11 8 3.5169 5.2523 0.2606 12 7 2.0483 -0.7493 1.1577 13 6 2.7641 -1.7752 0.6627 14 8 3.3374 -2.5944 1.3537 15 7 2.7715 -1.7949 -0.6750 16 6 3.4687 -2.8015 -1.4794 17 6 4.8975 -2.3310 -1.7586 18 1 5.3967 -2.1059 -0.8161 19 6 4.8609 -1.1207 -2.5956 20 7 4.8326 -0.1867 -3.2416 21 6 5.6639 -3.4343 -2.4907 22 6 7.1035 -3.0208 -2.6569 23 1 7.4384 -2.0665 -2.2778 24 6 7.9931 -3.8606 -3.2929 25 7 7.5854 -5.0228 -3.7541 26 14 9.7777 -3.3483 -3.4982 27 1 10.5634 -3.8102 -2.3258 28 1 10.3287 -3.9584 -4.7349 29 1 9.8596 -1.8688 -3.5973 30 6 2.0633 -0.7711 -1.1912 31 8 1.8895 -0.5188 -2.3641 32 1 -0.3633 0.4791 0.9092 33 1 -0.3632 0.5478 -0.8695 34 1 -0.3633 -1.0269 -0.0397 35 1 2.0636 1.5669 -2.1314 36 1 2.9307 3.8700 -2.1401 37 1 2.1554 1.5332 2.1320 38 1 5.0320 4.9304 1.6632 39 1 3.8132 6.1620 2.1178 40 1 1.9049 -0.5411 2.0941 41 1 3.4968 -3.7456 -0.9354 42 1 2.9414 -2.9414 -2.4230 43 1 5.6153 -4.3563 -1.9113 44 1 5.2173 -3.5976 -3.4715 45 1 8.2112 -5.6138 -4.2011 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007206558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = -43.157749 kcal Electronic energy + Delta-G solvation = -34132.503138 eV Core-core repulsion = 29503.666427 eV Total energy + Delta-G solvation = -4628.836710 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.89004 -42.38258 -38.99392 -38.39770 -36.91774 -36.62278 -36.27591 -34.96579 -33.62142 -32.02066 -31.31815 -30.87362 -29.44085 -27.63276 -26.28384 -25.20701 -24.24320 -23.43600 -23.27189 -21.88616 -21.68490 -20.55607 -18.43062 -18.36708 -17.93671 -17.59018 -17.21614 -16.98699 -16.49054 -16.25804 -15.87354 -15.72262 -15.41858 -14.84493 -14.75161 -14.52603 -14.34758 -14.22156 -14.07569 -14.02135 -13.54207 -13.31877 -13.14107 -13.10445 -12.99415 -12.86391 -12.56116 -12.41916 -12.13160 -11.78325 -11.55737 -11.48501 -11.21191 -11.12812 -10.93932 -10.88261 -10.61458 -10.37642 -10.23039 -9.97220 -9.80529 -9.50844 -9.21784 -9.20550 -8.46930 -8.40512 -6.11257 -4.14476 0.67201 0.87047 1.49628 2.08918 2.37944 2.85540 2.94630 3.06112 3.24518 3.29187 3.35806 3.40345 3.58533 3.61790 3.66550 3.98951 4.09804 4.32989 4.39764 4.41406 4.55601 4.65065 4.74536 4.83374 4.92593 5.01363 5.13016 5.16258 5.22173 5.27011 5.33590 5.41756 5.52211 5.57789 5.63459 5.68461 5.83532 5.87908 6.01047 6.09651 6.23056 6.39179 6.57222 6.75387 6.96528 7.26733 7.37280 7.45874 7.82940 8.02808 8.19223 8.39757 8.88828 9.50947 10.99653 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.009803 B = 0.002987 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.585605 B = 9370.526386 C =10795.779248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.170 3.830 3 C -0.089 4.089 4 C -0.087 4.087 5 C -0.091 4.091 6 C 0.041 3.959 7 C 0.030 3.970 8 C -0.077 4.077 9 O -0.308 6.308 10 C 0.213 3.787 11 O -0.307 6.307 12 N -0.723 5.723 13 C 0.705 3.295 14 O -0.529 6.529 15 N -0.574 5.574 16 C 0.124 3.876 17 C -0.008 4.008 18 H 0.107 0.893 19 C 0.229 3.771 20 N -0.451 5.451 21 C 0.035 3.965 22 C -0.526 4.526 23 H 0.056 0.944 24 C 0.064 3.936 25 N -0.890 5.890 26 Si 0.892 3.108 27 H -0.278 1.278 28 H -0.285 1.285 29 H -0.274 1.274 30 C 0.531 3.469 31 O -0.446 6.446 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.438 0.562 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.044 0.956 44 H 0.030 0.970 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.640 14.569 12.744 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.079 3.921 3 C -0.091 4.091 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.004 4.004 7 C -0.014 4.014 8 C -0.096 4.096 9 O -0.224 6.224 10 C 0.101 3.899 11 O -0.223 6.223 12 N -0.388 5.388 13 C 0.406 3.594 14 O -0.401 6.401 15 N -0.319 5.319 16 C 0.003 3.997 17 C -0.031 4.031 18 H 0.125 0.875 19 C -0.088 4.088 20 N -0.128 5.128 21 C -0.003 4.003 22 C -0.564 4.564 23 H 0.074 0.926 24 C -0.138 4.138 25 N -0.528 5.528 26 Si 0.720 3.280 27 H -0.204 1.204 28 H -0.211 1.211 29 H -0.199 1.199 30 C 0.316 3.684 31 O -0.314 6.314 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.283 0.717 41 H 0.136 0.864 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.385 15.619 11.428 25.358 hybrid contribution 1.360 0.220 0.669 1.531 sum -15.025 15.839 12.097 24.960 Atomic orbital electron populations 1.22011 0.89026 1.04149 1.04781 1.20056 0.97113 0.89377 0.85533 1.19025 1.03092 0.93803 0.93161 1.21192 0.96924 0.93505 0.98902 1.20099 1.01310 0.94101 0.95471 1.19906 1.01160 0.84272 0.95021 1.19577 1.03547 0.92907 0.85401 1.19540 1.01532 0.90077 0.98447 1.87358 1.67394 1.36759 1.30870 1.25665 0.94883 0.92885 0.76481 1.87387 1.77280 1.27162 1.30512 1.45660 1.55468 1.29027 1.08634 1.15852 0.79519 0.82227 0.81837 1.91054 1.47272 1.41090 1.60685 1.46542 1.48787 1.28749 1.07853 1.22061 0.91560 0.90272 0.95853 1.19621 0.95412 0.90099 0.97949 0.87536 1.28989 0.92366 0.93837 0.93646 1.80996 1.09208 1.12580 1.09995 1.19157 0.94328 0.91167 0.95679 1.21068 0.93608 1.03663 1.38103 0.92564 1.24929 0.98914 0.94851 0.95136 1.69925 1.35292 1.09280 1.38343 0.86582 0.84870 0.78878 0.77709 1.20408 1.21087 1.19906 1.20510 0.77726 0.80585 0.89607 1.90809 1.56340 1.68073 1.16152 0.90025 0.89459 0.90630 0.82616 0.84067 0.84675 0.89658 0.84997 0.71737 0.86366 0.87918 0.93828 0.95173 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.97 37.16 0.33 -0.61 16 2 C 0.17 1.65 1.16 -133.24 -0.15 1.49 16 3 C -0.09 -0.94 4.88 -104.61 -0.51 -1.45 16 4 C -0.09 -1.02 9.17 -39.58 -0.36 -1.39 16 5 C -0.09 -1.06 10.06 -39.47 -0.40 -1.45 16 6 C 0.04 0.48 7.15 -39.08 -0.28 0.20 16 7 C 0.03 0.34 7.15 -39.08 -0.28 0.06 16 8 C -0.08 -0.76 9.36 -39.47 -0.37 -1.12 16 9 O -0.31 -3.20 11.40 -45.68 -0.52 -3.72 16 10 C 0.21 1.70 8.89 101.05 0.90 2.59 16 11 O -0.31 -3.40 11.40 -45.69 -0.52 -3.92 16 12 N -0.72 -6.74 5.29 -54.02 -0.29 -7.02 16 13 C 0.70 9.31 8.62 -88.02 -0.76 8.55 16 14 O -0.53 -8.59 17.49 5.33 0.09 -8.50 16 15 N -0.57 -7.87 2.49 -120.73 -0.30 -8.17 16 16 C 0.12 1.84 5.13 -4.04 -0.02 1.82 16 17 C -0.01 -0.16 2.42 -93.41 -0.23 -0.38 16 18 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 19 C 0.23 4.74 12.37 -20.76 -0.26 4.49 16 20 N -0.45 -9.94 18.54 42.15 0.78 -9.16 16 21 C 0.04 0.81 4.42 -27.88 -0.12 0.69 16 22 C -0.53 -14.03 8.60 -34.44 -0.30 -14.33 16 23 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 26 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 30 C 0.53 6.96 5.81 -10.55 -0.06 6.89 16 31 O -0.45 -6.80 14.99 5.60 0.08 -6.72 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.16 2.00 5.77 -52.49 -0.30 1.70 16 36 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.14 0.99 6.95 -52.49 -0.36 0.63 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.44 2.85 8.10 -40.82 -0.33 2.52 16 41 H 0.12 1.61 7.87 -51.93 -0.41 1.20 16 42 H 0.10 1.46 8.00 -51.93 -0.42 1.04 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 391.15 15.07 5.89 5.89 Total: -1.00 -34.39 391.15 -7.18 -41.57 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.16 Total: 0.23 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.96 Total: 7.72 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.93 Total: -48.93 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.86 Total: -22.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.39 -7.18 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007206558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.584 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds