Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 110.53752 * 2 1 4 4 C 1.38255 * 119.92325 * 92.83356 * 3 2 1 5 5 C 1.38242 * 120.14112 * 179.97438 * 4 3 2 6 6 C 1.38547 * 120.02843 * 0.02562 * 5 4 3 7 7 C 1.39265 * 119.82892 * 359.97438 * 6 5 4 8 8 C 1.38237 * 119.93271 * 272.81151 * 3 2 1 9 9 O 1.36496 * 108.63997 * 179.97438 * 7 6 5 10 10 C 1.43989 * 105.48706 * 17.27637 * 9 7 6 11 11 O 1.36502 * 131.52949 * 179.97438 * 6 5 4 12 12 N 1.47319 * 110.72672 * 237.08491 * 2 1 3 13 13 C 1.34533 * 106.61861 * 241.41042 * 12 2 1 14 14 O 1.21531 * 123.77163 * 179.97438 * 13 12 2 15 15 N 1.33796 * 112.45458 * 0.02562 * 13 12 2 16 16 C 1.46497 * 124.17437 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46949 * 270.03904 * 16 15 13 18 18 H 1.09002 * 109.47388 * 304.99813 * 17 16 15 19 19 C 1.47201 * 109.47146 * 65.00213 * 17 16 15 20 20 N 5.20602 * 94.56613 * 185.31372 * 2 1 3 21 21 C 1.53001 * 109.47473 * 185.00000 * 17 16 15 22 22 C 1.50696 * 109.47839 * 174.99973 * 21 17 16 23 23 H 1.08008 * 119.99332 * 0.02562 * 22 21 17 24 24 C 1.37872 * 120.00431 * 180.02562 * 22 21 17 25 25 N 1.31516 * 119.99729 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99988 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47136 * 89.99870 * 26 24 22 28 28 H 1.48497 * 109.47035 * 209.99930 * 26 24 22 29 29 H 1.48508 * 109.46823 * 329.99863 * 26 24 22 30 30 C 1.34766 * 111.64621 * 359.97438 * 15 13 12 31 31 O 1.21231 * 127.15600 * 180.02562 * 30 15 13 32 32 H 1.08999 * 109.47349 * 59.99206 * 1 2 3 33 33 H 1.08997 * 109.47428 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46288 * 299.99556 * 1 2 3 35 35 H 1.08003 * 119.93234 * 359.70258 * 4 3 2 36 36 H 1.07996 * 119.98134 * 179.97438 * 5 4 3 37 37 H 1.07998 * 119.98031 * 0.02562 * 8 3 2 38 38 H 1.09007 * 110.56997 * 91.44608 * 10 9 7 39 39 H 1.09000 * 110.57689 * 214.31831 * 10 9 7 40 40 H 0.96999 * 126.68903 * 61.38819 * 12 2 1 41 41 H 1.09005 * 109.47447 * 30.03412 * 16 15 13 42 42 H 1.08994 * 109.47288 * 150.03646 * 16 15 13 43 43 H 1.09009 * 109.46860 * 295.00217 * 21 17 16 44 44 H 1.09003 * 109.46869 * 54.99516 * 21 17 16 45 45 H 0.97002 * 119.99455 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3561 2.0363 1.1968 5 6 2.8418 3.3305 1.2020 6 6 3.0313 4.0048 0.0066 7 6 2.7317 3.3752 -1.1989 8 6 2.2456 2.0778 -1.1965 9 8 3.0006 4.2390 -2.2209 10 6 3.8508 5.2532 -1.6535 11 8 3.4885 5.2630 -0.2601 12 7 2.0514 -0.7487 -1.1567 13 6 2.7645 -1.7759 -0.6604 14 8 3.3355 -2.5975 -1.3502 15 7 2.7739 -1.7923 0.6774 16 6 3.4709 -2.7979 1.4832 17 6 2.5289 -3.9711 1.7610 18 1 1.6142 -3.6009 2.2241 19 6 2.1996 -4.6463 0.4952 20 7 1.9444 -5.1672 -0.4806 21 6 3.2132 -4.9622 2.7047 22 6 2.2432 -6.0540 3.0760 23 1 1.2391 -6.0425 2.6782 24 6 2.6374 -7.0677 3.9233 25 7 1.7910 -8.0208 4.2468 26 14 4.3743 -7.0880 4.6106 27 1 4.4081 -6.3397 5.8928 28 1 4.7973 -8.4920 4.8456 29 1 5.2983 -6.4485 3.6397 30 6 2.0630 -0.7696 1.1922 31 8 1.8867 -0.5175 2.3648 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3632 0.5138 0.8901 35 1 2.2045 1.5139 2.1298 36 1 3.0729 3.8165 2.1384 37 1 2.0124 1.5870 -2.1299 38 1 4.9003 4.9846 -1.7740 39 1 3.6477 6.2223 -2.1092 40 1 1.9081 -0.5417 -2.0934 41 1 4.3461 -3.1553 0.9406 42 1 3.7853 -2.3529 2.4272 43 1 4.0790 -5.3991 2.2070 44 1 3.5366 -4.4415 3.6060 45 1 2.0685 -8.7342 4.8427 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007206563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -38.539020 kcal Electronic energy + Delta-G solvation = -33628.846680 eV Core-core repulsion = 29000.210253 eV Total energy + Delta-G solvation = -4628.636427 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.97600 -42.51186 -39.10902 -38.47289 -37.03113 -36.76643 -36.32728 -35.01817 -33.63572 -32.09774 -31.43766 -31.02229 -29.52491 -28.09617 -26.42165 -25.27190 -24.39669 -23.53752 -23.40953 -21.73653 -21.57723 -20.61289 -18.51065 -18.50461 -18.07476 -17.73449 -17.23991 -17.02724 -16.87401 -16.44751 -16.05454 -15.79331 -15.52975 -14.95712 -14.81980 -14.49932 -14.36326 -14.22396 -14.19582 -14.05236 -13.54463 -13.46782 -13.44519 -13.23521 -13.08610 -12.86175 -12.55839 -12.46755 -12.36900 -12.06230 -11.65826 -11.56969 -11.35123 -11.27977 -11.04505 -10.94413 -10.50185 -10.39370 -10.22467 -9.94791 -9.81947 -9.55284 -9.37062 -9.34835 -8.63196 -8.55504 -6.12164 -4.13536 0.52759 0.71164 1.40634 2.01870 2.24453 2.78272 2.89856 2.93144 3.10679 3.25919 3.34957 3.35186 3.56501 3.61692 3.64989 3.90211 3.95473 4.17893 4.37112 4.37919 4.42002 4.56419 4.61671 4.69649 4.77239 4.93979 5.01667 5.15626 5.17608 5.20917 5.22290 5.34785 5.46381 5.47074 5.55021 5.63751 5.64357 5.71952 5.86256 5.92906 6.09886 6.15419 6.55072 6.60843 6.84074 6.89935 7.05171 7.16969 7.58810 8.00093 8.36597 8.43248 8.90204 9.46816 11.00766 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002263 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.591213 B =12371.922885 C =12923.749158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.170 3.830 3 C -0.083 4.083 4 C -0.095 4.095 5 C -0.093 4.093 6 C 0.039 3.961 7 C 0.031 3.969 8 C -0.077 4.077 9 O -0.307 6.307 10 C 0.213 3.787 11 O -0.307 6.307 12 N -0.722 5.722 13 C 0.700 3.300 14 O -0.521 6.521 15 N -0.573 5.573 16 C 0.120 3.880 17 C 0.004 3.996 18 H 0.111 0.889 19 C 0.227 3.773 20 N -0.442 5.442 21 C -0.002 4.002 22 C -0.528 4.528 23 H 0.074 0.926 24 C 0.072 3.928 25 N -0.895 5.895 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.287 1.287 29 H -0.263 1.263 30 C 0.536 3.464 31 O -0.452 6.452 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.438 0.562 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.029 0.971 44 H 0.038 0.962 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 29.876 -8.870 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.078 3.922 3 C -0.085 4.085 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.005 4.005 7 C -0.013 4.013 8 C -0.096 4.096 9 O -0.224 6.224 10 C 0.101 3.899 11 O -0.224 6.224 12 N -0.388 5.388 13 C 0.401 3.599 14 O -0.392 6.392 15 N -0.318 5.318 16 C -0.001 4.001 17 C -0.019 4.019 18 H 0.128 0.872 19 C -0.091 4.091 20 N -0.118 5.118 21 C -0.041 4.041 22 C -0.566 4.566 23 H 0.092 0.908 24 C -0.130 4.130 25 N -0.533 5.533 26 Si 0.704 3.296 27 H -0.199 1.199 28 H -0.213 1.213 29 H -0.187 1.187 30 C 0.322 3.678 31 O -0.321 6.321 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.283 0.717 41 H 0.123 0.877 42 H 0.135 0.865 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.175 28.715 -10.011 30.487 hybrid contribution 0.973 0.293 0.175 1.031 sum 3.149 29.008 -9.836 30.791 Atomic orbital electron populations 1.22052 0.88883 1.04548 1.04864 1.20066 0.97319 0.89207 0.85565 1.19047 1.02497 0.93813 0.93155 1.21262 0.97076 0.93935 0.99027 1.20102 1.01895 0.93668 0.95541 1.19926 1.01245 0.84240 0.95134 1.19601 1.03552 0.92539 0.85595 1.19587 1.01550 0.89832 0.98611 1.87380 1.66419 1.35884 1.32675 1.25670 0.94777 0.93446 0.75994 1.87383 1.80172 1.26951 1.27851 1.45653 1.55411 1.29064 1.08644 1.15902 0.79963 0.82157 0.81902 1.91087 1.47209 1.40251 1.60624 1.46490 1.49100 1.28319 1.07916 1.22073 0.95321 0.86496 0.96237 1.19329 1.00802 0.93789 0.87944 0.87153 1.28688 0.93321 0.93430 0.93684 1.80980 1.08873 1.09260 1.12658 1.19627 0.96993 0.93993 0.93512 1.20944 0.99398 1.07064 1.29184 0.90792 1.24978 0.97275 0.95058 0.95738 1.69903 1.35280 1.12714 1.35411 0.86823 0.85268 0.77631 0.79907 1.19908 1.21275 1.18735 1.20461 0.77382 0.80412 0.89555 1.90777 1.56324 1.68868 1.16135 0.90030 0.90386 0.89227 0.82329 0.83990 0.84653 0.89682 0.84969 0.71739 0.87728 0.86545 0.95235 0.94390 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.97 37.16 0.33 -0.71 16 2 C 0.17 1.50 1.16 -133.24 -0.15 1.35 16 3 C -0.08 -0.69 4.89 -104.62 -0.51 -1.20 16 4 C -0.09 -0.79 9.17 -39.57 -0.36 -1.15 16 5 C -0.09 -0.74 10.06 -39.47 -0.40 -1.14 16 6 C 0.04 0.35 7.15 -39.09 -0.28 0.07 16 7 C 0.03 0.28 7.15 -39.09 -0.28 0.00 16 8 C -0.08 -0.61 9.36 -39.47 -0.37 -0.98 16 9 O -0.31 -2.63 11.40 -45.68 -0.52 -3.15 16 10 C 0.21 1.22 8.89 101.05 0.90 2.12 16 11 O -0.31 -2.62 11.40 -45.69 -0.52 -3.14 16 12 N -0.72 -6.92 5.37 -54.02 -0.29 -7.21 16 13 C 0.70 9.61 7.98 -88.01 -0.70 8.91 16 14 O -0.52 -9.18 16.52 5.34 0.09 -9.09 16 15 N -0.57 -7.48 2.49 -120.73 -0.30 -7.78 16 16 C 0.12 1.66 5.14 -4.04 -0.02 1.64 16 17 C 0.00 0.07 2.42 -93.41 -0.23 -0.16 16 18 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 19 C 0.23 4.75 12.19 -20.79 -0.25 4.49 16 20 N -0.44 -10.20 18.49 42.12 0.78 -9.42 16 21 C 0.00 -0.05 3.49 -27.88 -0.10 -0.14 16 22 C -0.53 -14.10 9.15 -34.44 -0.32 -14.42 16 23 H 0.07 2.18 7.84 -52.48 -0.41 1.77 16 24 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 25 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 26 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 30 C 0.54 6.17 6.46 -10.56 -0.07 6.10 16 31 O -0.45 -5.68 15.61 5.60 0.09 -5.59 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.16 1.35 5.61 -52.48 -0.29 1.05 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 0.83 7.10 -52.49 -0.37 0.45 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.44 3.14 8.18 -40.82 -0.33 2.81 16 41 H 0.10 1.44 7.86 -51.93 -0.41 1.03 16 42 H 0.12 1.33 8.00 -51.93 -0.42 0.91 16 43 H 0.03 0.63 7.20 -51.92 -0.37 0.26 16 44 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -36.05 387.13 -6.77 -42.82 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.13 Total: 0.38 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.90 Total: 6.71 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.96 Total: -50.49 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.87 Total: -20.97 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.05 -6.77 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007206563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.283 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds