Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36152 * 119.93595 * 244.05272 * 3 2 1 5 5 S 1.76196 * 119.74201 * 359.97438 * 4 3 2 6 6 C 1.81007 * 100.00093 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47522 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47377 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99779 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00005 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00373 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99665 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47488 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47128 * 120.00185 * 12 10 8 15 15 H 1.48502 * 109.47049 * 239.99947 * 12 10 8 16 16 N 1.37897 * 120.51262 * 179.97438 * 4 3 2 17 17 C 1.34567 * 120.72635 * 341.23766 * 16 4 3 18 18 O 1.21268 * 119.76214 * 179.74878 * 17 16 4 19 19 C 1.50578 * 120.48639 * 359.72446 * 17 16 4 20 20 C 1.50674 * 119.93583 * 64.03660 * 3 2 1 21 21 H 1.09002 * 109.47711 * 333.87067 * 20 3 2 22 22 C 1.50707 * 109.47658 * 93.88729 * 20 3 2 23 23 C 1.38250 * 119.92639 * 59.70601 * 22 20 3 24 24 C 1.38244 * 120.13805 * 179.72645 * 23 22 20 25 25 C 1.38549 * 120.02582 * 0.58720 * 24 23 22 26 26 C 1.39263 * 119.83274 * 359.67515 * 25 24 23 27 27 C 1.38241 * 119.92520 * 239.98542 * 22 20 3 28 28 O 1.36491 * 108.64108 * 180.02562 * 26 25 24 29 29 C 1.43992 * 105.48537 * 342.71838 * 28 26 25 30 30 O 1.36501 * 131.52599 * 179.69116 * 25 24 23 31 31 H 1.09005 * 109.46431 * 300.00124 * 6 5 4 32 32 H 1.08998 * 109.46980 * 59.99638 * 6 5 4 33 33 H 1.09004 * 109.47040 * 299.99986 * 7 6 5 34 34 H 1.08998 * 109.47375 * 59.99774 * 7 6 5 35 35 H 0.97000 * 120.00443 * 180.02562 * 11 10 8 36 36 H 0.96997 * 119.63834 * 161.21566 * 16 4 3 37 37 H 1.09000 * 109.43978 * 274.25213 * 19 17 16 38 38 H 1.09002 * 109.46095 * 154.31476 * 19 17 16 39 39 H 1.07997 * 119.92858 * 0.02562 * 23 22 20 40 40 H 1.08000 * 119.98258 * 180.25692 * 24 23 22 41 41 H 1.07996 * 119.98412 * 359.97438 * 27 22 20 42 42 H 1.08994 * 110.57042 * 268.55537 * 29 28 26 43 43 H 1.09002 * 110.56947 * 145.68334 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2472 0.5172 1.0609 5 16 2.3574 1.1829 2.4282 6 6 3.7371 1.6950 3.4819 7 6 3.1924 2.3202 4.7677 8 6 4.3412 2.7460 5.6452 9 1 5.3581 2.5862 5.3186 10 6 4.0939 3.3394 6.8649 11 7 2.8555 3.5335 7.2627 12 14 5.5179 3.8679 7.9522 13 1 6.8014 3.5401 7.2810 14 1 5.4426 5.3318 8.1897 15 1 5.4418 3.1512 9.2506 16 7 4.6261 0.5234 1.0736 17 6 5.3249 -0.2875 0.2581 18 8 6.5371 -0.2644 0.2806 19 6 4.6126 -1.2237 -0.6818 20 6 3.3202 -0.5707 -1.1739 21 1 2.7023 -1.3173 -1.6729 22 6 3.6539 0.5344 -2.1428 23 6 4.4283 1.6028 -1.7304 24 6 4.7418 2.6160 -2.6170 25 6 4.2699 2.5688 -3.9188 26 6 3.4852 1.4953 -4.3327 27 6 3.1801 0.4803 -3.4404 28 8 3.1499 1.6796 -5.6429 29 6 3.3941 3.0733 -5.9099 30 8 4.4259 3.4259 -4.9696 31 1 4.3463 0.8260 3.7306 32 1 4.3470 2.4265 2.9519 33 1 2.5829 3.1891 4.5193 34 1 2.5828 1.5883 5.2976 35 1 2.6815 3.9513 8.1207 36 1 5.0976 1.1190 1.6768 37 1 4.3747 -2.1504 -0.1595 38 1 5.2565 -1.4424 -1.5337 39 1 4.7932 1.6434 -0.7147 40 1 5.3504 3.4474 -2.2933 41 1 2.5720 -0.3535 -3.7586 42 1 2.4943 3.6612 -5.7292 43 1 3.7443 3.2116 -6.9328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009015001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = -46.008058 kcal Electronic energy + Delta-G solvation = -30317.690727 eV Core-core repulsion = 26033.764626 eV Total energy + Delta-G solvation = -4283.926100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 372.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.19439 -42.26475 -39.38671 -38.18998 -37.29339 -37.19572 -35.88259 -35.01069 -33.01381 -31.64774 -31.50871 -30.36795 -27.53550 -26.88008 -25.96772 -25.13976 -24.01597 -23.33118 -22.89548 -21.22728 -19.56071 -18.98930 -18.75296 -18.57020 -18.35302 -18.06331 -17.75268 -17.50013 -16.68155 -16.54769 -16.17714 -15.76731 -15.60832 -15.39301 -15.10486 -14.98593 -14.86553 -14.75661 -14.43183 -14.16284 -14.08836 -13.99606 -13.87704 -13.73362 -13.71085 -13.21475 -13.15324 -13.00591 -12.84672 -12.53923 -12.31899 -12.26924 -12.05742 -11.86647 -11.77994 -11.64477 -11.19178 -11.10670 -10.63378 -10.10959 -9.88629 -9.08893 -8.67226 -8.25643 -6.38005 -0.30772 0.03062 0.17372 0.21217 0.88066 1.40864 1.41968 1.43122 1.54407 1.69535 1.78897 1.96990 2.37398 2.38957 2.50186 2.53055 2.87793 3.09706 3.45505 3.52441 3.62253 3.79259 3.82878 3.99810 4.03999 4.05753 4.11835 4.12410 4.20683 4.23835 4.30586 4.51105 4.63685 4.70709 4.82686 4.93269 5.00579 5.05647 5.19563 5.27570 5.32536 5.34151 5.40975 5.48101 5.69468 5.70557 6.06249 6.10021 6.60434 6.68886 6.76771 7.32386 8.85908 Molecular weight = 372.10amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.002341 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.219959 B =11959.235863 C =12418.102412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.284 3.716 3 C -0.121 4.121 4 C 0.198 3.802 5 S -0.085 6.085 6 C -0.095 4.095 7 C 0.041 3.959 8 C -0.537 4.537 9 H 0.072 0.928 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.965 3.035 13 H -0.258 1.258 14 H -0.281 1.281 15 H -0.281 1.281 16 N -0.658 5.658 17 C 0.528 3.472 18 O -0.539 6.539 19 C -0.127 4.127 20 C 0.037 3.963 21 H 0.149 0.851 22 C -0.069 4.069 23 C -0.113 4.113 24 C -0.105 4.105 25 C 0.014 3.986 26 C 0.019 3.981 27 C -0.084 4.084 28 O -0.321 6.321 29 C 0.204 3.796 30 O -0.327 6.327 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.004 0.996 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.418 0.582 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -8.292 -25.513 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.021 4.021 5 S 0.162 5.838 6 C -0.243 4.243 7 C 0.002 3.998 8 C -0.576 4.576 9 H 0.090 0.910 10 C -0.195 4.195 11 N -0.569 5.569 12 Si 0.789 3.211 13 H -0.182 1.182 14 H -0.207 1.207 15 H -0.207 1.207 16 N -0.305 5.305 17 C 0.317 3.683 18 O -0.414 6.414 19 C -0.166 4.166 20 C 0.016 3.984 21 H 0.166 0.834 22 C -0.070 4.070 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.031 4.031 26 C -0.025 4.025 27 C -0.102 4.102 28 O -0.237 6.237 29 C 0.094 3.906 30 O -0.244 6.244 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.260 0.740 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.182 0.818 42 H 0.117 0.883 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.000 -8.156 -25.386 26.683 hybrid contribution 2.128 1.291 1.045 2.700 sum 3.128 -6.865 -24.341 25.483 Atomic orbital electron populations 1.81254 1.12973 1.10861 1.08508 1.25235 0.92143 0.92669 0.92944 1.17077 0.84033 1.15910 0.97379 1.22054 0.85662 0.97643 0.96737 1.86964 1.13514 1.71322 1.12008 1.23866 0.97059 1.04417 0.98977 1.18697 0.96178 0.94872 0.90032 1.21529 0.93511 1.39795 1.02799 0.90965 1.25928 0.98259 0.95736 0.99553 1.70088 1.20914 1.44096 1.21837 0.85395 0.79477 0.77776 0.78404 1.18152 1.20699 1.20699 1.43837 1.03937 1.41250 1.41439 1.21539 0.87281 0.79837 0.79605 1.90819 1.15036 1.67447 1.68101 1.22040 0.95906 0.98638 1.00019 1.18754 0.95119 0.94898 0.89589 0.83366 1.19580 0.97620 0.96385 0.93371 1.21110 0.98869 0.93462 0.99677 1.20207 1.02438 1.01092 0.88621 1.20023 1.00975 0.91531 0.90533 1.19981 1.00222 0.97769 0.84534 1.20162 1.01318 0.98616 0.90146 1.87327 1.84168 1.29208 1.23017 1.26091 0.90375 0.77983 0.96173 1.87333 1.53466 1.55547 1.28048 0.88301 0.88205 0.97799 0.97829 0.92627 0.74001 0.83356 0.84313 0.85044 0.84249 0.81810 0.88349 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.37 18.54 19.00 0.35 -13.02 16 2 C 0.28 6.81 14.10 88.33 1.25 8.06 16 3 C -0.12 -2.23 4.78 -19.11 -0.09 -2.32 16 4 C 0.20 4.20 6.39 83.25 0.53 4.74 16 5 S -0.08 -2.50 20.87 -56.49 -1.18 -3.68 16 6 C -0.10 -3.15 4.29 71.98 0.31 -2.84 16 7 C 0.04 1.91 4.98 29.84 0.15 2.06 16 8 C -0.54 -27.42 9.11 25.60 0.23 -27.19 16 9 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 10 C 0.00 0.22 5.46 84.66 0.46 0.68 16 11 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 12 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 13 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 16 N -0.66 -12.91 3.75 -306.45 -1.15 -14.05 16 17 C 0.53 9.81 5.57 87.65 0.49 10.29 16 18 O -0.54 -13.86 17.92 -2.99 -0.05 -13.91 16 19 C -0.13 -1.29 5.52 29.79 0.16 -1.13 16 20 C 0.04 0.43 2.73 -12.31 -0.03 0.40 16 21 H 0.15 0.81 7.80 -2.39 -0.02 0.79 16 22 C -0.07 -1.06 4.73 -19.86 -0.09 -1.16 16 23 C -0.11 -2.14 8.41 22.27 0.19 -1.95 16 24 C -0.10 -2.16 10.06 22.35 0.22 -1.94 16 25 C 0.01 0.29 7.15 22.59 0.16 0.46 16 26 C 0.02 0.38 7.15 22.59 0.16 0.54 16 27 C -0.08 -1.29 9.68 22.34 0.22 -1.08 16 28 O -0.32 -5.94 11.40 -75.95 -0.87 -6.80 16 29 C 0.20 2.74 8.89 113.37 1.01 3.75 16 30 O -0.33 -6.71 11.40 -76.06 -0.87 -7.58 16 31 H 0.10 3.01 8.01 -2.39 -0.02 2.99 16 32 H 0.10 2.95 7.38 -2.40 -0.02 2.93 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.42 8.56 6.42 -92.71 -0.60 7.96 16 37 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.14 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.13 2.55 4.42 -2.91 -0.01 2.53 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.16 1.61 7.94 -2.91 -0.02 1.59 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -71.64 381.89 4.37 -67.27 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.50 Total: 10.20 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.32 Total: -8.63 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -0.51 Total: -80.49 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -1.79 Total: -28.29 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -1.18 Total: -3.68 kcal Total: -71.64 4.37 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009015001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.261 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds