Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48499 * 109.47105 * 239.99418 * 3 2 1 5 5 H 1.48502 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47191 * 119.99831 * 3 2 1 7 7 C 1.38670 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99897 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00446 * 0.02562 * 7 2 1 10 10 C 1.76196 * 100.00321 * 179.97438 * 9 7 2 11 11 N 1.31429 * 126.50757 * 0.02571 * 10 9 7 12 12 N 1.28516 * 109.85144 * 179.97438 * 11 10 9 13 13 C 1.30505 * 110.12836 * 0.02562 * 12 11 10 14 14 C 1.50706 * 126.32439 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46982 * 90.02236 * 14 13 12 16 16 C 1.38234 * 120.00257 * 90.00130 * 15 14 13 17 17 C 1.38238 * 119.99675 * 180.27927 * 16 15 14 18 18 C 1.38228 * 120.00120 * 359.47825 * 17 16 15 19 19 C 1.38234 * 120.00000 * 0.52176 * 18 17 16 20 20 C 1.38234 * 119.99503 * 270.01730 * 15 14 13 21 21 N 1.36691 * 107.34741 * 0.23430 * 13 12 11 22 22 C 1.40239 * 127.15230 * 179.76640 * 21 13 12 23 23 C 1.38831 * 120.04987 * 294.71434 * 22 21 13 24 24 C 1.38111 * 119.94155 * 179.79738 * 23 22 21 25 25 C 1.38386 * 120.05698 * 0.48607 * 24 23 22 26 26 Cl 1.73604 * 119.94680 * 179.72269 * 25 24 23 27 27 C 1.38382 * 120.10522 * 359.74745 * 25 24 23 28 28 C 1.38117 * 120.05116 * 0.02562 * 27 25 24 29 29 H 0.97001 * 119.99922 * 0.02562 * 1 2 3 30 30 H 1.08988 * 109.47229 * 330.01691 * 14 13 12 31 31 H 1.09000 * 109.46558 * 210.01671 * 14 13 12 32 32 H 1.08002 * 119.99744 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.99577 * 179.72816 * 17 16 15 34 34 H 1.07999 * 119.99932 * 180.24104 * 18 17 16 35 35 H 1.08001 * 120.00310 * 179.72161 * 19 18 17 36 36 H 1.07997 * 120.00460 * 0.02562 * 20 15 14 37 37 H 1.07999 * 120.02629 * 0.02562 * 23 22 21 38 38 H 1.08007 * 119.97087 * 180.23411 * 24 23 22 39 39 H 1.07994 * 119.97461 * 179.97438 * 27 25 24 40 40 H 1.08001 * 120.02054 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6965 1.2126 7 6 2.0097 -1.2009 0.0005 8 1 3.0897 -1.2009 0.0001 9 16 1.1288 -2.7269 0.0005 10 6 2.4786 -3.8594 0.0005 11 7 3.7566 -3.5528 0.0010 12 7 4.4630 -4.6264 0.0014 13 6 3.6862 -5.6751 0.0006 14 6 4.1306 -7.1152 0.0002 15 6 4.2776 -7.5959 1.4209 16 6 3.2011 -8.1694 2.0715 17 6 3.3345 -8.6051 3.3766 18 6 4.5472 -8.4771 4.0275 19 6 5.6237 -7.9036 3.3769 20 6 5.4889 -7.4630 2.0736 21 7 2.3952 -5.2260 -0.0056 22 6 1.2281 -6.0035 -0.0131 23 6 0.9339 -6.8053 -1.1076 24 6 -0.2140 -7.5733 -1.1109 25 6 -1.0757 -7.5363 -0.0287 26 17 -2.5215 -8.4973 -0.0389 27 6 -0.7871 -6.7341 1.0613 28 6 0.3620 -5.9679 1.0712 29 1 -0.4850 0.8401 -0.0004 30 1 5.0884 -7.1997 -0.5130 31 1 3.3876 -7.7244 -0.5145 32 1 2.2546 -8.2725 1.5617 33 1 2.4922 -9.0491 3.8863 34 1 4.6524 -8.8210 5.0458 35 1 6.5699 -7.7995 3.8870 36 1 6.3297 -7.0144 1.5656 37 1 1.6041 -6.8313 -1.9542 38 1 -0.4413 -8.2002 -1.9605 39 1 -1.4613 -6.7066 1.9045 40 1 0.5866 -5.3417 1.9220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009570839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = 115.940173 kcal Electronic energy + Delta-G solvation = -27588.211470 eV Core-core repulsion = 23713.902704 eV Total energy + Delta-G solvation = -3874.308766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 371.055 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37822 -39.43037 -39.21835 -36.76198 -34.43667 -33.57815 -32.68828 -31.40199 -30.93256 -29.90480 -29.45197 -26.83619 -25.59869 -23.63153 -23.24243 -22.64949 -21.76605 -21.62561 -20.27522 -18.58067 -17.47405 -16.92793 -16.71419 -16.22382 -15.65391 -15.31670 -15.05133 -14.95999 -14.62039 -14.58970 -14.34723 -13.79707 -13.66820 -13.44277 -13.21307 -13.07550 -12.73812 -12.44778 -12.26893 -11.97586 -11.75806 -11.45272 -11.28703 -11.13372 -11.12961 -11.07754 -11.03916 -10.71430 -10.26787 -10.13967 -9.92872 -9.63570 -9.32689 -8.96069 -8.94302 -8.88936 -8.75970 -8.69931 -6.82757 -6.49754 -4.24629 0.70582 1.01859 1.25185 1.36719 1.87177 2.22947 2.36871 3.15455 3.20856 3.21813 3.28348 3.29985 3.47765 3.73814 3.99251 4.54641 4.59888 4.66119 4.73125 4.75452 4.94198 4.94663 4.97373 5.01681 5.06055 5.10082 5.12378 5.32372 5.42917 5.55814 5.59291 5.66485 5.73622 5.92505 5.94645 5.97057 5.99835 6.10195 6.31326 6.37783 6.39936 6.45786 6.58524 6.63209 6.94559 7.40638 7.54217 8.33636 9.02031 9.36797 10.58252 Molecular weight = 371.06amu Principal moments of inertia in cm(-1) A = 0.006990 B = 0.003840 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4004.855088 B = 7290.603969 C =10232.812456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.105 0.895 9 S 0.145 5.855 10 C 0.177 3.823 11 N -0.305 5.305 12 N -0.278 5.278 13 C 0.154 3.846 14 C 0.015 3.985 15 C -0.078 4.078 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.100 4.100 21 N -0.440 5.440 22 C 0.141 3.859 23 C -0.098 4.098 24 C -0.098 4.098 25 C -0.029 4.029 26 Cl -0.067 7.067 27 C -0.094 4.094 28 C -0.084 4.084 29 H 0.275 0.725 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -20.675 2.672 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.757 3.243 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.685 4.685 8 H 0.123 0.877 9 S 0.378 5.622 10 C -0.192 4.192 11 N -0.149 5.149 12 N -0.117 5.117 13 C -0.115 4.115 14 C -0.025 4.025 15 C -0.080 4.080 16 C -0.128 4.128 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.119 4.119 21 N -0.135 5.135 22 C 0.049 3.951 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.056 4.056 26 Cl -0.039 7.039 27 C -0.114 4.114 28 C -0.104 4.104 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.359 -19.870 2.654 20.050 hybrid contribution 0.427 0.508 0.037 0.665 sum 0.067 -19.362 2.692 19.549 Atomic orbital electron populations 1.69938 1.06060 1.28605 1.46593 1.25061 0.95170 0.99597 0.93382 0.85980 0.79089 0.79624 0.79561 1.19402 1.20749 1.19399 1.23179 0.97195 0.89168 1.58918 0.87750 1.83583 0.97310 0.95319 1.85994 1.28628 1.02392 0.84790 1.03342 1.74781 0.98746 1.18241 1.23094 1.73889 1.26879 0.94528 1.16393 1.24443 0.80043 0.97641 1.09361 1.18832 1.03171 0.86359 0.94121 1.19674 0.94119 0.98580 0.95597 1.21023 0.97968 0.98702 0.95069 1.21086 0.97570 1.00420 0.94792 1.21139 0.93334 0.99832 0.99755 1.21143 0.98921 0.98911 0.94905 1.21109 0.97379 0.98480 0.94890 1.43686 1.04966 1.05374 1.59490 1.17587 0.87404 0.95020 0.95076 1.21128 0.97333 0.96333 0.97005 1.20882 0.93188 0.99868 0.97830 1.20985 0.90214 0.97533 0.96887 1.98377 1.36588 1.70316 1.98574 1.20942 0.97022 0.95418 0.97972 1.21230 0.93311 0.98074 0.97797 0.91528 0.87773 0.89592 0.86485 0.86187 0.86291 0.86083 0.85589 0.84388 0.84061 0.83916 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.33 13.22 55.48 0.73 -23.59 16 2 C 0.08 2.10 5.49 -17.48 -0.10 2.00 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.95 9.37 30.89 0.29 -14.66 16 8 H 0.10 3.01 6.93 -52.48 -0.36 2.65 16 9 S 0.15 3.60 21.58 -107.50 -2.32 1.28 16 10 C 0.18 4.08 8.00 -87.86 -0.70 3.37 16 11 N -0.30 -7.56 11.04 30.78 0.34 -7.22 16 12 N -0.28 -6.06 12.18 33.02 0.40 -5.65 16 13 C 0.15 2.74 7.24 -153.88 -1.11 1.63 16 14 C 0.01 0.19 5.70 -29.03 -0.17 0.02 16 15 C -0.08 -1.00 5.12 -104.62 -0.54 -1.53 16 16 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 17 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 18 C -0.12 -1.29 10.05 -39.59 -0.40 -1.68 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.10 -1.24 9.70 -39.58 -0.38 -1.63 16 21 N -0.44 -8.10 2.84 -57.58 -0.16 -8.27 16 22 C 0.14 2.10 5.28 -83.57 -0.44 1.66 16 23 C -0.10 -1.18 9.05 -39.41 -0.36 -1.54 16 24 C -0.10 -1.00 9.82 -39.57 -0.39 -1.39 16 25 C -0.03 -0.31 6.32 -39.47 -0.25 -0.56 16 26 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 27 C -0.09 -1.06 9.82 -39.57 -0.39 -1.45 16 28 C -0.08 -1.16 9.92 -39.41 -0.39 -1.55 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.10 1.18 8.08 -51.94 -0.42 0.76 16 31 H 0.09 0.91 7.07 -51.93 -0.37 0.55 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 39 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -32.01 384.28 -12.33 -44.34 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.09 Total: 1.67 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -6.50 Total: -22.42 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 1.31 Total: -44.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.32 Total: 1.28 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.01 -12.33 -44.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009570839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.279 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds