Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47266 * 180.02562 * 12 10 9 14 14 C 1.33661 * 125.88692 * 89.71321 * 13 12 10 15 15 N 1.31367 * 115.85692 * 179.81844 * 14 13 12 16 16 C 1.30249 * 117.01502 * 0.48854 * 15 14 13 17 17 C 1.47819 * 125.47571 * 179.77554 * 16 15 14 18 18 C 1.39595 * 120.08575 * 179.67903 * 17 16 15 19 19 C 1.37847 * 119.90661 * 179.74089 * 18 17 16 20 20 C 1.38875 * 120.08807 * 0.56036 * 19 18 17 21 21 O 1.35851 * 119.91234 * 179.71778 * 20 19 18 22 22 C 1.42902 * 116.99775 * 359.97438 * 21 20 19 23 23 F 1.39894 * 109.47353 * 60.00118 * 22 21 20 24 24 F 1.39901 * 109.46933 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47419 * 299.99556 * 22 21 20 26 26 C 1.38876 * 120.17399 * 359.69096 * 20 19 18 27 27 C 1.37844 * 120.08273 * 0.02964 * 26 20 19 28 28 S 1.76175 * 109.05175 * 359.73661 * 16 15 14 29 29 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 31 31 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 32 32 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 33 33 H 1.08007 * 122.07224 * 0.02562 * 14 13 12 34 34 H 1.07998 * 120.04552 * 0.02882 * 18 17 16 35 35 H 1.08004 * 119.95230 * 180.25185 * 19 18 17 36 36 H 1.07991 * 119.95536 * 179.97438 * 26 20 19 37 37 H 1.08001 * 120.04049 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 6 2.2231 -6.0084 0.0016 14 6 2.7364 -6.5999 1.0848 15 7 3.5733 -7.5865 0.8564 16 6 3.8208 -7.8760 -0.3891 17 6 4.7316 -8.9419 -0.8574 18 6 4.9091 -9.1599 -2.2247 19 6 5.7635 -10.1514 -2.6574 20 6 6.4381 -10.9405 -1.7350 21 8 7.2749 -11.9205 -2.1654 22 6 7.4115 -12.0825 -3.5786 23 9 7.9008 -10.8976 -4.1387 24 9 8.3041 -13.1266 -3.8441 25 9 6.1640 -12.3817 -4.1365 26 6 6.2601 -10.7302 -0.3739 27 6 5.4119 -9.7369 0.0666 28 16 2.8948 -6.7938 -1.4261 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0038 31 1 0.6175 -4.9205 0.8914 32 1 0.6168 -4.9209 -0.8885 33 1 2.4765 -6.2884 2.0858 34 1 4.3815 -8.5496 -2.9426 35 1 5.9045 -10.3181 -3.7151 36 1 6.7862 -11.3461 0.3403 37 1 5.2743 -9.5736 1.1253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012409436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = -161.652364 kcal Electronic energy + Delta-G solvation = -29035.371405 eV Core-core repulsion = 24068.740757 eV Total energy + Delta-G solvation = -4966.630648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 372.054 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.87463 -48.59630 -48.46243 -40.69036 -39.50850 -38.32568 -37.81235 -34.12924 -32.75220 -31.65842 -31.38811 -30.76733 -27.42706 -26.40700 -25.09371 -24.04114 -23.36054 -22.58464 -20.28384 -19.94079 -19.58412 -19.45414 -19.03862 -18.14242 -17.60133 -17.06737 -16.37800 -16.07181 -15.68022 -15.43275 -15.25755 -15.07828 -14.94637 -14.87256 -14.69400 -14.59732 -14.56947 -14.27456 -14.18090 -14.02196 -13.93581 -13.72428 -13.64154 -12.78732 -12.67433 -12.46368 -12.27576 -11.93924 -11.60255 -11.52051 -11.15900 -10.91852 -10.45209 -10.30208 -9.64888 -9.61651 -9.60547 -9.53027 -9.07670 -8.57446 -8.07384 -8.03100 -6.50406 -3.91723 0.13233 0.86078 1.03374 1.26939 1.40169 1.83684 2.39815 2.88206 3.12186 3.22118 3.27959 3.32743 3.39061 3.58557 3.77182 3.90408 4.11331 4.18554 4.32608 4.68571 4.84741 4.86198 4.99161 5.07037 5.13001 5.14719 5.43240 5.51062 5.54493 5.72874 5.78915 5.96383 5.99348 6.06917 6.18911 6.36233 6.44211 7.47354 7.79011 7.95054 8.49226 9.07860 9.42168 9.92527 10.66768 Molecular weight = 372.05amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.001637 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.878148 B =17099.269563 C =17666.324148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.557 5.557 10 C 0.439 3.561 11 O -0.586 6.586 12 C -0.064 4.064 13 C -0.147 4.147 14 C 0.032 3.968 15 N -0.452 5.452 16 C 0.080 3.920 17 C -0.024 4.024 18 C -0.061 4.061 19 C -0.186 4.186 20 C 0.108 3.892 21 O -0.309 6.309 22 C 0.603 3.397 23 F -0.163 7.163 24 F -0.132 7.132 25 F -0.164 7.164 26 C -0.121 4.121 27 C -0.041 4.041 28 S 0.106 5.894 29 H 0.273 0.727 30 H 0.394 0.606 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.174 0.826 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.906 -24.919 -5.448 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.192 5.192 10 C 0.223 3.777 11 O -0.471 6.471 12 C -0.107 4.107 13 C -0.269 4.269 14 C -0.119 4.119 15 N -0.165 5.165 16 C -0.194 4.194 17 C -0.028 4.028 18 C -0.081 4.081 19 C -0.204 4.204 20 C 0.065 3.935 21 O -0.229 6.229 22 C 0.513 3.487 23 F -0.145 7.145 24 F -0.114 7.114 25 F -0.146 7.146 26 C -0.140 4.140 27 C -0.062 4.062 28 S 0.363 5.637 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.191 0.809 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.787 -24.993 -6.045 27.173 hybrid contribution -0.447 1.287 0.408 1.422 sum 8.340 -23.706 -5.637 25.754 Atomic orbital electron populations 1.69605 1.05950 1.28359 1.50017 1.25284 0.95659 0.99809 0.97036 0.85843 0.79270 0.80645 0.78473 1.20319 1.20823 1.19362 1.19719 0.93420 0.82105 1.47905 0.87841 1.41843 1.09262 1.04474 1.63664 1.19610 0.88279 0.84402 0.85364 1.90562 1.13646 1.87029 1.55851 1.20088 0.95748 0.90284 1.04620 1.25377 1.04637 1.02377 0.94491 1.21393 0.96313 0.93967 1.00197 1.66457 1.15237 1.16227 1.18610 1.25415 1.02649 1.00430 0.90890 1.17865 0.97196 0.94739 0.92978 1.20969 0.96478 0.96303 0.94358 1.21356 1.00807 0.98741 0.99530 1.18828 0.91882 0.88588 0.94191 1.86408 1.63355 1.53774 1.19373 1.19358 0.75005 0.75114 0.79257 1.93319 1.88038 1.47594 1.85591 1.93313 1.67891 1.57441 1.92705 1.93310 1.42468 1.93155 1.85693 1.20383 1.01496 1.00492 0.91593 1.21159 0.92557 0.91732 1.00787 1.84690 1.39792 1.27926 1.11337 0.91725 0.77282 0.87781 0.88861 0.80864 0.84547 0.84369 0.83737 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.58 5.29 -10.96 -0.06 -13.64 16 10 C 0.44 9.93 7.78 -10.98 -0.09 9.84 16 11 O -0.59 -15.55 15.61 5.55 0.09 -15.47 16 12 C -0.06 -1.06 6.23 -29.04 -0.18 -1.24 16 13 C -0.15 -2.41 5.08 -35.91 -0.18 -2.59 16 14 C 0.03 0.52 11.14 -19.35 -0.22 0.30 16 15 N -0.45 -7.06 10.14 -11.37 -0.12 -7.17 16 16 C 0.08 1.15 7.35 -14.31 -0.11 1.04 16 17 C -0.02 -0.28 5.87 -104.97 -0.62 -0.90 16 18 C -0.06 -0.62 9.60 -39.22 -0.38 -1.00 16 19 C -0.19 -1.74 8.24 -39.49 -0.33 -2.06 16 20 C 0.11 1.01 6.49 -39.11 -0.25 0.76 16 21 O -0.31 -2.73 10.37 -19.27 -0.20 -2.93 16 22 C 0.60 4.73 3.42 101.05 0.35 5.08 16 23 F -0.16 -1.33 15.55 2.25 0.04 -1.30 16 24 F -0.13 -0.99 17.53 2.25 0.04 -0.95 16 25 F -0.16 -1.28 15.55 2.25 0.04 -1.24 16 26 C -0.12 -1.05 9.97 -39.49 -0.39 -1.45 16 27 C -0.04 -0.42 9.67 -39.22 -0.38 -0.80 16 28 S 0.11 1.55 22.39 -107.50 -2.41 -0.86 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 30 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.17 2.46 8.06 -52.48 -0.42 2.04 16 34 H 0.14 1.25 7.29 -52.49 -0.38 0.87 16 35 H 0.14 1.11 5.07 -52.48 -0.27 0.85 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.15 1.46 7.82 -52.49 -0.41 1.05 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -31.27 358.31 -7.08 -38.35 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -2.58 Total: 8.06 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.01 Total: -0.84 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.55 Total: -43.85 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.11 Total: -18.40 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.11 Total: -3.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.41 Total: -0.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.27 -7.08 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012409436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.306 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds