Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47138 * 270.00664 * 3 2 1 5 5 H 1.48504 * 109.46987 * 30.00070 * 3 2 1 6 6 H 1.48496 * 109.47106 * 150.00065 * 3 2 1 7 7 C 1.37874 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00343 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99588 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46557 * 180.02562 * 9 7 2 11 11 C 1.34665 * 124.64296 * 264.99685 * 10 9 7 12 12 C 1.37860 * 109.61978 * 180.02562 * 11 10 9 13 13 C 1.41735 * 126.91196 * 179.97438 * 12 11 10 14 14 O 1.21404 * 119.99925 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.99982 * 359.97438 * 13 12 11 16 16 O 1.42900 * 109.47126 * 179.97438 * 15 13 12 17 17 C 1.36006 * 117.00060 * 179.97438 * 16 15 13 18 18 C 1.38640 * 120.03370 * 359.72741 * 17 16 15 19 19 C 1.38192 * 119.98653 * 179.71903 * 18 17 16 20 20 C 1.38455 * 120.07356 * 0.55668 * 19 18 17 21 21 F 1.35098 * 119.96127 * 179.74476 * 20 19 18 22 22 C 1.38443 * 120.07321 * 359.71867 * 20 19 18 23 23 C 1.38336 * 120.00298 * 0.02562 * 22 20 19 24 24 F 1.35105 * 120.03172 * 179.97438 * 23 22 20 25 25 C 1.47612 * 106.17632 * 359.74704 * 12 11 10 26 26 C 1.39193 * 133.98945 * 179.49988 * 25 12 11 27 27 C 1.37806 * 119.67024 * 180.47534 * 26 25 12 28 28 C 1.38721 * 120.26842 * 0.25865 * 27 26 25 29 29 C 1.37773 * 120.63971 * 359.97438 * 28 27 26 30 30 C 1.38017 * 124.64537 * 85.00017 * 10 9 7 31 31 H 0.97001 * 120.00005 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46987 * 60.00290 * 9 7 2 33 33 H 1.08998 * 109.47353 * 299.99421 * 9 7 2 34 34 H 1.08009 * 125.19290 * 0.02562 * 11 10 9 35 35 H 1.09001 * 109.46992 * 299.99517 * 15 13 12 36 36 H 1.09005 * 109.47014 * 59.99420 * 15 13 12 37 37 H 1.07996 * 120.00480 * 359.97301 * 18 17 16 38 38 H 1.08001 * 119.96341 * 180.25140 * 19 18 17 39 39 H 1.07990 * 120.00048 * 180.02562 * 22 20 19 40 40 H 1.08002 * 120.16755 * 0.75706 * 26 25 12 41 41 H 1.07997 * 119.85962 * 180.28130 * 27 26 25 42 42 H 1.07999 * 119.68057 * 180.02562 * 28 27 26 43 43 H 1.08001 * 120.03010 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6271 -4.2573 -1.1042 12 6 3.5156 -5.2494 -0.7482 13 6 4.1824 -6.1475 -1.6187 14 8 4.9443 -6.9777 -1.1669 15 6 3.9455 -6.0718 -3.1050 16 8 4.7252 -7.0724 -3.7631 17 6 4.6259 -7.1405 -5.1178 18 6 3.7913 -6.2665 -5.7973 19 6 3.6955 -6.3328 -7.1743 20 6 4.4235 -7.2789 -7.8756 21 9 4.3243 -7.3451 -9.2213 22 6 5.2534 -8.1568 -7.1994 23 6 5.3557 -8.0898 -5.8215 24 9 6.1650 -8.9465 -5.1610 25 6 3.6372 -5.1845 0.7215 26 6 4.3583 -5.9108 1.6649 27 6 4.2424 -5.5969 3.0017 28 6 3.4077 -4.5661 3.4080 29 6 2.6848 -3.8426 2.4849 30 6 2.7882 -4.1447 1.1306 31 1 -0.4850 0.8401 0.0004 32 1 0.6240 -2.5566 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 2.3182 -4.0315 -2.1143 35 1 2.8887 -6.2388 -3.3134 36 1 4.2365 -5.0867 -3.4696 37 1 3.2192 -5.5313 -5.2508 38 1 3.0483 -5.6491 -7.7035 39 1 5.8210 -8.8940 -7.7477 40 1 5.0089 -6.7135 1.3504 41 1 4.8040 -6.1554 3.7358 42 1 3.3244 -4.3278 4.4581 43 1 2.0376 -3.0423 2.8122 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012610063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = -78.680866 kcal Electronic energy + Delta-G solvation = -31550.080246 eV Core-core repulsion = 26776.322871 eV Total energy + Delta-G solvation = -4773.757375 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.112 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.23095 -49.07577 -41.18205 -40.35390 -38.60254 -37.19573 -36.77132 -33.73336 -32.10744 -31.32051 -30.53538 -29.82324 -29.34729 -28.01854 -26.86035 -24.10528 -23.45769 -22.90394 -22.60657 -21.64229 -20.52926 -19.07434 -18.67416 -18.05948 -17.59904 -17.01173 -16.71647 -16.46337 -16.26248 -15.96071 -15.93048 -15.42836 -15.30114 -15.13843 -15.05922 -14.69216 -14.62705 -14.42965 -14.11875 -13.62497 -13.58612 -13.42190 -13.24118 -12.78620 -12.55377 -12.54397 -12.24715 -12.17132 -11.89233 -11.62090 -11.51361 -11.30542 -11.19124 -11.01225 -11.00534 -10.68173 -10.36340 -9.89777 -9.48743 -9.42636 -9.14639 -8.87788 -8.44935 -7.88474 -7.29656 -6.49292 -4.60480 0.56582 0.68196 1.17607 1.83708 2.21669 2.61175 2.98790 3.06056 3.14313 3.17356 3.38480 3.47733 3.58104 3.99661 4.09825 4.12844 4.31972 4.34771 4.49697 4.62046 4.84467 4.87050 4.97197 4.99080 5.03024 5.13322 5.33665 5.39123 5.41837 5.51633 5.58489 5.61120 5.64642 5.83201 5.95223 6.03148 6.14021 6.24446 6.39462 6.46859 6.67618 6.81483 6.91416 6.95655 7.03953 7.22400 7.41097 7.58039 7.64313 7.69032 7.96457 8.46648 9.09186 10.57251 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.008548 B = 0.002403 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.846262 B =11650.736330 C =14389.300103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.226 3.774 10 N -0.419 5.419 11 C 0.156 3.844 12 C -0.313 4.313 13 C 0.433 3.567 14 O -0.462 6.462 15 C 0.009 3.991 16 O -0.281 6.281 17 C 0.094 3.906 18 C -0.156 4.156 19 C -0.119 4.119 20 C 0.086 3.914 21 F -0.134 7.134 22 C -0.153 4.153 23 C 0.100 3.900 24 F -0.121 7.121 25 C -0.054 4.054 26 C -0.084 4.084 27 C -0.139 4.139 28 C -0.120 4.120 29 C -0.099 4.099 30 C 0.084 3.916 31 H 0.270 0.730 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.175 0.825 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -11.014 -9.460 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.086 0.914 9 C 0.108 3.892 10 N -0.092 5.092 11 C 0.013 3.987 12 C -0.321 4.321 13 C 0.314 3.686 14 O -0.339 6.339 15 C -0.067 4.067 16 O -0.193 6.193 17 C 0.047 3.953 18 C -0.175 4.175 19 C -0.138 4.138 20 C 0.066 3.934 21 F -0.113 7.113 22 C -0.173 4.173 23 C 0.080 3.920 24 F -0.099 7.099 25 C -0.058 4.058 26 C -0.103 4.103 27 C -0.158 4.158 28 C -0.140 4.140 29 C -0.118 4.118 30 C -0.020 4.020 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.192 0.808 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.466 -11.176 -9.035 15.049 hybrid contribution 0.166 1.247 -0.370 1.311 sum 4.632 -9.929 -9.405 14.439 Atomic orbital electron populations 1.69906 1.06115 1.28072 1.48309 1.24933 0.94963 0.99644 0.93955 0.86350 0.79856 0.81978 0.78586 1.20155 1.20729 1.19479 1.21278 0.93817 0.89477 1.54145 0.91445 1.19990 0.87030 0.81850 1.00331 1.44639 1.34131 1.26613 1.03827 1.22525 0.93108 0.90580 0.92526 1.19251 1.12534 1.07217 0.93134 1.19447 0.79936 0.82081 0.87155 1.90551 1.31183 1.33605 1.78571 1.23401 0.96743 0.92193 0.94338 1.86297 1.64290 1.54157 1.14595 1.19129 0.96435 0.95537 0.84216 1.21100 1.01022 1.00930 0.94460 1.21033 1.00124 0.98645 0.93952 1.17145 1.00268 0.98506 0.77458 1.91523 1.95097 1.95826 1.28821 1.20881 1.02073 1.02109 0.92227 1.16538 0.95000 0.91655 0.88838 1.91563 1.70206 1.67619 1.80554 1.18760 0.98613 0.96841 0.91557 1.20513 0.98862 0.99222 0.91665 1.20885 1.00625 0.98949 0.95366 1.20734 0.97914 0.96651 0.98675 1.20216 1.01461 1.00735 0.89435 1.18312 0.98242 0.96538 0.88932 0.91984 0.92826 0.93008 0.80806 0.88545 0.88439 0.83005 0.83531 0.82814 0.85689 0.86398 0.86109 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.71 13.29 55.43 0.74 -21.98 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.55 -13.24 9.39 -34.44 -0.32 -13.56 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.23 4.83 5.68 -5.19 -0.03 4.80 16 10 N -0.42 -7.93 2.70 -115.28 -0.31 -8.24 16 11 C 0.16 2.44 10.71 -16.45 -0.18 2.26 16 12 C -0.31 -5.20 6.11 -104.88 -0.64 -5.84 16 13 C 0.43 6.82 7.03 -32.98 -0.23 6.58 16 14 O -0.46 -8.83 16.14 -14.45 -0.23 -9.06 16 15 C 0.01 0.10 4.50 36.00 0.16 0.27 16 16 O -0.28 -3.85 9.53 -39.66 -0.38 -4.23 16 17 C 0.09 1.07 6.69 -39.19 -0.26 0.81 16 18 C -0.16 -1.33 9.04 -39.45 -0.36 -1.69 16 19 C -0.12 -0.93 10.02 -39.52 -0.40 -1.33 16 20 C 0.09 0.77 7.30 -39.43 -0.29 0.48 16 21 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 22 C -0.15 -1.41 10.00 -39.47 -0.39 -1.80 16 23 C 0.10 1.14 7.31 -39.31 -0.29 0.85 16 24 F -0.12 -1.60 17.11 2.25 0.04 -1.56 16 25 C -0.05 -1.01 6.24 -104.93 -0.65 -1.66 16 26 C -0.08 -1.44 9.80 -39.38 -0.39 -1.82 16 27 C -0.14 -2.10 10.03 -39.56 -0.40 -2.50 16 28 C -0.12 -1.84 10.01 -39.57 -0.40 -2.23 16 29 C -0.10 -1.75 9.96 -39.42 -0.39 -2.14 16 30 C 0.08 1.61 6.78 -83.95 -0.57 1.04 16 31 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.17 1.97 7.91 -52.48 -0.42 1.55 16 35 H 0.10 0.82 7.65 -51.93 -0.40 0.43 16 36 H 0.10 0.88 7.68 -51.93 -0.40 0.48 16 37 H 0.15 0.94 6.30 -52.49 -0.33 0.61 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 2.10 7.38 -52.49 -0.39 1.71 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -29.86 388.50 -9.82 -39.68 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.43 Total: 2.32 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -6.12 Total: -15.88 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: 0.42 Total: -30.22 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.61 Total: -13.29 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.86 -9.82 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012610063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.001 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds