Wall clock time and date at job start Tue Mar 31 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00235 * 2 1 4 4 H 1.48501 * 109.46972 * 269.99528 * 3 2 1 5 5 H 1.48501 * 109.47273 * 29.99513 * 3 2 1 6 6 H 1.48502 * 109.47085 * 149.99634 * 3 2 1 7 7 C 1.37887 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99437 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00340 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47321 * 179.97438 * 9 7 2 11 11 C 1.34485 * 125.18157 * 125.28572 * 10 9 7 12 12 C 1.38037 * 107.84008 * 180.16691 * 11 10 9 13 13 C 1.47041 * 126.80163 * 179.83798 * 12 11 10 14 14 C 1.34871 * 119.99871 * 359.69214 * 13 12 11 15 15 C 1.46346 * 119.99991 * 180.27686 * 14 13 12 16 16 N 1.31396 * 125.04132 * 179.72211 * 15 14 13 17 17 C 1.35696 * 108.72168 * 179.97438 * 16 15 14 18 18 C 1.39757 * 133.59506 * 179.97438 * 17 16 15 19 19 C 1.37682 * 119.72418 * 180.02562 * 18 17 16 20 20 C 1.38712 * 120.42054 * 0.03582 * 19 18 17 21 21 C 1.38009 * 120.49743 * 359.96191 * 20 19 18 22 22 C 1.38573 * 119.91478 * 0.02562 * 21 20 19 23 23 O 1.34810 * 125.03390 * 359.41620 * 15 14 13 24 24 C 1.46628 * 106.39761 * 359.57963 * 12 11 10 25 25 C 1.48252 * 126.48999 * 180.23968 * 24 12 11 26 26 C 1.39403 * 120.12594 * 324.72586 * 25 24 12 27 27 C 1.38001 * 119.87025 * 179.67986 * 26 25 24 28 28 C 1.38330 * 120.12451 * 0.61671 * 27 26 25 29 29 C 1.38334 * 120.25763 * 359.67873 * 28 27 26 30 30 C 1.37998 * 120.12837 * 359.97438 * 29 28 27 31 31 N 1.31440 * 107.01884 * 0.26066 * 24 12 11 32 32 H 0.96998 * 119.99433 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.46972 * 59.99619 * 9 7 2 34 34 H 1.09005 * 109.47008 * 300.00366 * 9 7 2 35 35 H 1.07994 * 126.07900 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.99796 * 179.69209 * 13 12 11 37 37 H 1.08002 * 119.99798 * 359.97438 * 14 13 12 38 38 H 1.08002 * 120.13714 * 0.04698 * 18 17 16 39 39 H 1.08001 * 119.79345 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.75038 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.04067 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.06371 * 359.97438 * 26 25 24 43 43 H 1.07994 * 119.93978 * 180.34098 * 27 26 25 44 44 H 1.08002 * 119.87335 * 179.70294 * 28 27 26 45 45 H 1.08001 * 119.93551 * 180.02562 * 29 28 27 46 46 H 1.08006 * 120.06386 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4993 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.2237 -4.6143 0.8978 12 6 3.2629 -5.4594 0.5641 13 6 3.6620 -6.6861 1.2699 14 6 2.9880 -7.0812 2.3693 15 6 3.3890 -8.2988 3.0753 16 7 2.8079 -8.7708 4.1551 17 6 3.4436 -9.9097 4.5293 18 6 3.2620 -10.8144 5.5789 19 6 4.0950 -11.9048 5.6922 20 6 5.1125 -12.1099 4.7720 21 6 5.3037 -11.2250 3.7304 22 6 4.4752 -10.1219 3.5998 23 8 4.4057 -9.1055 2.7107 24 6 3.8861 -4.8950 -0.6372 25 6 5.0439 -5.4539 -1.3753 26 6 6.0722 -6.0926 -0.6838 27 6 7.1444 -6.6168 -1.3768 28 6 7.2061 -6.4982 -2.7536 29 6 6.1916 -5.8601 -3.4445 30 6 5.1111 -5.3383 -2.7628 31 7 3.2240 -3.7994 -0.9354 32 1 -0.4849 0.8401 -0.0004 33 1 0.6246 -2.5571 -0.8896 34 1 0.6239 -2.5567 0.8903 35 1 1.5490 -4.7347 1.7324 36 1 4.4950 -7.2706 0.9080 37 1 2.1553 -6.4964 2.7314 38 1 2.4714 -10.6590 6.2981 39 1 3.9560 -12.6044 6.5032 40 1 5.7599 -12.9687 4.8714 41 1 6.0980 -11.3921 3.0179 42 1 6.0276 -6.1812 0.3916 43 1 7.9389 -7.1167 -0.8428 44 1 8.0493 -6.9057 -3.2914 45 1 6.2449 -5.7708 -4.5194 46 1 4.3194 -4.8406 -3.3032 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012790729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:28 Heat of formation + Delta-G solvation = 146.582528 kcal Electronic energy + Delta-G solvation = -30516.447430 eV Core-core repulsion = 26338.980489 eV Total energy + Delta-G solvation = -4177.466940 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.137 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.17172 -40.56108 -38.77952 -38.17862 -35.02534 -34.51651 -33.67459 -32.47666 -30.95109 -30.84530 -30.39839 -30.04016 -28.49562 -26.93253 -24.31421 -23.84032 -23.28337 -22.61462 -22.22590 -21.80486 -21.09853 -19.59965 -19.29214 -17.92536 -17.18771 -16.97230 -16.76154 -16.73889 -16.29248 -15.73183 -15.12962 -14.89433 -14.65457 -14.47752 -14.29480 -14.21863 -14.01027 -13.51884 -13.46835 -13.27065 -12.93675 -12.69119 -12.59838 -12.47345 -12.37268 -12.01910 -11.88586 -11.75801 -11.65955 -11.17523 -11.10028 -11.01317 -10.95763 -10.50582 -10.45570 -10.38444 -10.15308 -9.93820 -9.29725 -9.02453 -8.90460 -8.76068 -8.67204 -8.26975 -7.31676 -6.36839 -4.43166 0.25025 1.01050 1.11181 1.44148 1.46259 2.40176 2.49557 2.76672 3.14298 3.17480 3.23793 3.29904 3.37105 3.52965 3.74756 3.96042 4.21496 4.34371 4.57225 4.63933 4.82247 4.90074 4.93557 4.97259 4.98269 4.99030 5.01123 5.14362 5.18267 5.26953 5.42066 5.52446 5.55452 5.62492 5.72274 5.89015 5.89376 5.95646 5.99666 6.08718 6.09171 6.14567 6.30263 6.35857 6.49953 6.51437 6.52815 6.56503 6.71436 6.82218 6.96647 7.03603 7.48120 7.58377 7.68463 7.69671 8.24375 8.63871 9.23584 10.71886 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.008027 B = 0.002275 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.291817 B =12303.011299 C =15234.790998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.250 3.750 10 N -0.312 5.312 11 C 0.096 3.904 12 C -0.256 4.256 13 C 0.046 3.954 14 C -0.165 4.165 15 C 0.314 3.686 16 N -0.493 5.493 17 C 0.035 3.965 18 C -0.071 4.071 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.089 4.089 22 C -0.001 4.001 23 O -0.215 6.215 24 C 0.106 3.894 25 C 0.002 3.998 26 C -0.102 4.102 27 C -0.122 4.122 28 C -0.120 4.120 29 C -0.121 4.121 30 C -0.092 4.092 31 N -0.255 5.255 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.180 0.820 36 H 0.126 0.874 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.057 -21.831 4.021 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.133 3.867 10 N -0.087 5.087 11 C -0.056 4.056 12 C -0.268 4.268 13 C 0.023 3.977 14 C -0.186 4.186 15 C 0.110 3.890 16 N -0.222 5.222 17 C -0.078 4.078 18 C -0.090 4.090 19 C -0.139 4.139 20 C -0.124 4.124 21 C -0.108 4.108 22 C -0.052 4.052 23 O -0.108 6.108 24 C -0.060 4.060 25 C 0.000 4.000 26 C -0.122 4.122 27 C -0.140 4.140 28 C -0.139 4.139 29 C -0.139 4.139 30 C -0.111 4.111 31 N -0.075 5.075 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.197 0.803 36 H 0.144 0.856 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.087 -20.244 3.532 22.892 hybrid contribution 0.846 0.089 0.273 0.894 sum 10.933 -20.155 3.805 23.243 Atomic orbital electron populations 1.69908 1.06059 1.27902 1.49117 1.24939 0.95012 0.99648 0.94296 0.86297 0.79669 0.81906 0.78507 1.20211 1.20862 1.19629 1.21178 0.93988 0.89090 1.52951 0.91169 1.19953 0.85645 0.81227 0.99844 1.49342 1.22916 1.18957 1.17473 1.23082 0.98183 0.88952 0.95403 1.19855 1.03834 1.01078 1.02019 1.21567 0.94504 0.91194 0.90420 1.20506 1.05816 0.93283 0.98991 1.24319 0.82615 0.91817 0.90268 1.71143 1.28314 1.10074 1.12673 1.19973 0.94869 0.94970 0.98008 1.20347 1.00007 0.92607 0.96002 1.21010 0.95504 0.97554 0.99818 1.20968 0.98538 0.98911 0.93990 1.19877 0.99233 0.91540 1.00163 1.20358 1.00831 0.92141 0.91848 1.84618 1.47665 1.31477 1.47018 1.21865 0.96028 0.93668 0.94468 1.17783 0.91790 0.98009 0.92382 1.21229 0.93259 0.97608 1.00061 1.21023 0.98139 1.00414 0.94396 1.21184 0.98712 0.99553 0.94446 1.21079 0.94184 0.98730 0.99940 1.21305 0.98434 0.98163 0.93211 1.77444 1.00632 1.16187 1.13281 0.92130 0.93115 0.92176 0.80344 0.85576 0.82662 0.84797 0.84770 0.84487 0.84892 0.85604 0.85912 0.86207 0.85896 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 2 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 3 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.10 9.21 -34.44 -0.32 -14.42 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.25 5.88 6.21 -5.20 -0.03 5.85 16 10 N -0.31 -6.50 3.63 -61.94 -0.22 -6.73 16 11 C 0.10 1.64 10.79 -16.46 -0.18 1.46 16 12 C -0.26 -4.12 6.22 -103.02 -0.64 -4.76 16 13 C 0.05 0.62 8.89 -37.21 -0.33 0.29 16 14 C -0.17 -2.19 9.72 -37.52 -0.36 -2.55 16 15 C 0.31 4.57 7.89 -14.48 -0.11 4.45 16 16 N -0.49 -7.62 11.39 -9.60 -0.11 -7.73 16 17 C 0.04 0.48 7.23 -84.75 -0.61 -0.13 16 18 C -0.07 -0.74 10.10 -39.22 -0.40 -1.14 16 19 C -0.12 -0.94 10.02 -39.61 -0.40 -1.33 16 20 C -0.11 -0.80 10.03 -39.49 -0.40 -1.19 16 21 C -0.09 -0.86 10.06 -39.54 -0.40 -1.25 16 22 C 0.00 -0.02 7.42 -38.62 -0.29 -0.30 16 23 O -0.21 -3.02 10.34 1.70 0.02 -3.00 16 24 C 0.11 1.90 6.94 -80.53 -0.56 1.35 16 25 C 0.00 0.04 5.84 -104.91 -0.61 -0.58 16 26 C -0.10 -1.32 8.67 -39.23 -0.34 -1.66 16 27 C -0.12 -1.32 10.03 -39.63 -0.40 -1.72 16 28 C -0.12 -1.26 10.04 -39.51 -0.40 -1.65 16 29 C -0.12 -1.40 10.03 -39.63 -0.40 -1.80 16 30 C -0.09 -1.30 9.76 -39.24 -0.38 -1.69 16 31 N -0.26 -5.40 12.28 34.58 0.42 -4.97 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 35 H 0.18 2.40 7.29 -52.49 -0.38 2.02 16 36 H 0.13 1.56 5.90 -52.49 -0.31 1.25 16 37 H 0.16 1.88 6.93 -52.49 -0.36 1.52 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.51 6.41 -52.49 -0.34 1.18 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 405.65 15.07 6.11 6.11 Total: -1.00 -31.19 405.65 -10.87 -42.06 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.16 Total: 3.25 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -7.65 Total: -21.16 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.83 Total: -43.00 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.02 Total: -3.00 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.19 -10.87 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012790729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.643 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds