Wall clock time and date at job start Tue Mar 31 2020 05:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86797 * 119.99513 * 2 1 4 4 H 1.48504 * 109.47156 * 270.00297 * 3 2 1 5 5 H 1.48503 * 109.47399 * 30.00030 * 3 2 1 6 6 H 1.48500 * 109.47222 * 150.00235 * 3 2 1 7 7 C 1.39926 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99472 * 176.38769 * 7 2 1 9 9 C 1.41111 * 120.00154 * 356.38046 * 7 2 1 10 10 C 1.40893 * 120.16047 * 214.48603 * 9 7 2 11 11 C 1.36346 * 119.83012 * 180.02562 * 10 9 7 12 12 C 1.39526 * 120.16974 * 359.97438 * 11 10 9 13 13 N 1.39090 * 119.83871 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99819 * 324.45575 * 13 12 11 15 15 O 1.21534 * 120.00496 * 4.62738 * 14 13 12 16 16 C 1.47963 * 119.99804 * 184.62437 * 14 13 12 17 17 C 1.39625 * 119.99325 * 359.73025 * 16 14 13 18 18 C 1.37763 * 120.00762 * 179.76398 * 17 16 14 19 19 C 1.39678 * 119.99123 * 0.53190 * 18 17 16 20 20 C 1.47911 * 120.00501 * 179.69977 * 19 18 17 21 21 O 1.21529 * 119.99827 * 171.99974 * 20 19 18 22 22 C 1.47705 * 120.00070 * 352.00565 * 20 19 18 23 23 C 1.39710 * 120.15470 * 323.52443 * 22 20 19 24 24 C 1.37909 * 119.83992 * 179.77134 * 23 22 20 25 25 C 1.38395 * 120.15902 * 0.48183 * 24 23 22 26 26 C 1.38397 * 120.31292 * 359.77176 * 25 24 23 27 27 C 1.37913 * 120.15846 * 359.97438 * 26 25 24 28 28 C 1.39670 * 119.98610 * 359.71912 * 19 18 17 29 29 C 1.37766 * 119.99651 * 359.97438 * 28 19 18 30 30 C 1.39525 * 120.32346 * 0.26264 * 12 11 10 31 31 C 1.36352 * 120.16517 * 359.47219 * 30 12 11 32 32 H 0.96994 * 120.00313 * 359.97438 * 1 2 3 33 33 H 1.07999 * 120.08831 * 0.02562 * 10 9 7 34 34 H 1.08004 * 119.91893 * 179.97438 * 11 10 9 35 35 H 0.96997 * 119.99851 * 144.18439 * 13 12 11 36 36 H 1.08003 * 119.99511 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.00727 * 180.23319 * 18 17 16 38 38 H 1.07997 * 120.07869 * 359.97438 * 23 22 20 39 39 H 1.08006 * 119.92412 * 180.21397 * 24 23 22 40 40 H 1.07999 * 119.84553 * 179.74908 * 25 24 23 41 41 H 1.08002 * 119.92508 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.08059 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00370 * 179.97438 * 28 19 18 44 44 H 1.07999 * 119.99993 * 180.02562 * 29 28 19 45 45 H 1.07998 * 119.91757 * 179.74372 * 30 12 11 46 46 H 1.07996 * 120.08271 * 180.23584 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7000 7 6 2.0083 -1.2118 -0.0005 8 1 3.0867 -1.2126 -0.0595 9 6 1.3049 -2.4327 0.0761 10 6 1.8585 -3.5262 0.7709 11 6 1.1732 -4.7029 0.8403 12 6 -0.0734 -4.8256 0.2258 13 7 -0.7662 -6.0294 0.3004 14 6 -0.0932 -7.1968 0.2774 15 8 1.1222 -7.1977 0.2763 16 6 -0.8339 -8.4774 0.2534 17 6 -2.2301 -8.4764 0.2603 18 6 -2.9201 -9.6685 0.2331 19 6 -2.2227 -10.8785 0.2098 20 6 -2.9633 -12.1587 0.1873 21 8 -2.3655 -13.2036 0.0207 22 6 -4.4293 -12.1671 0.3672 23 6 -5.0335 -11.2666 1.2480 24 6 -6.4033 -11.2770 1.4075 25 6 -7.1782 -12.1833 0.7049 26 6 -6.5860 -13.0817 -0.1654 27 6 -5.2178 -13.0792 -0.3387 28 6 -0.8260 -10.8793 0.2082 29 6 -0.1366 -9.6868 0.2290 30 6 -0.6257 -3.7487 -0.4683 31 6 0.0454 -2.5640 -0.5415 32 1 -0.4850 0.8400 0.0004 33 1 2.8231 -3.4326 1.2475 34 1 1.5964 -5.5422 1.3722 35 1 -1.7335 -6.0286 0.3729 36 1 -2.7693 -7.5409 0.2828 37 1 -4.0001 -9.6676 0.2347 38 1 -4.4296 -10.5619 1.8003 39 1 -6.8721 -10.5791 2.0855 40 1 -8.2501 -12.1896 0.8367 41 1 -7.1967 -13.7865 -0.7102 42 1 -4.7569 -13.7812 -1.0179 43 1 -0.2865 -11.8147 0.1906 44 1 0.9434 -9.6873 0.2273 45 1 -1.5892 -3.8522 -0.9450 46 1 -0.3850 -1.7301 -1.0759 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015029566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:33 Heat of formation + Delta-G solvation = 12.338415 kcal Electronic energy + Delta-G solvation = -30179.002421 eV Core-core repulsion = 25963.421468 eV Total energy + Delta-G solvation = -4215.580953 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 371.131 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.89605 -40.03935 -38.80921 -38.14530 -37.12771 -34.60582 -33.15074 -32.72142 -31.48808 -31.42847 -30.72793 -29.62987 -28.87416 -26.16965 -24.90681 -23.51633 -23.29918 -22.48853 -21.75214 -20.98148 -20.50481 -19.75461 -18.17091 -17.70818 -17.35071 -16.70942 -16.54525 -16.10367 -15.51835 -15.38343 -15.19887 -14.87278 -14.76895 -14.55685 -14.29108 -14.13491 -14.04186 -13.89042 -13.59910 -13.19956 -13.01620 -12.85589 -12.58556 -12.56456 -12.20775 -12.19009 -11.77985 -11.60053 -11.46102 -11.38031 -11.19491 -10.98132 -10.57001 -10.24657 -10.15186 -9.89343 -9.49168 -9.45480 -9.42404 -9.33948 -9.27420 -9.21060 -8.83410 -7.60456 -6.95127 -6.67927 -4.38719 -0.08043 0.58559 0.86492 1.04223 1.97397 2.57561 2.96941 3.04513 3.07281 3.10353 3.18110 3.31719 3.44644 3.52913 3.78041 3.94152 4.32695 4.39690 4.45586 4.54935 4.57443 4.63031 4.67334 4.85693 4.91932 5.00257 5.01315 5.11214 5.33696 5.38453 5.48413 5.60413 5.64372 5.81141 5.86027 5.87962 5.95476 6.03886 6.06750 6.14453 6.37558 6.38504 6.46634 6.67023 6.86065 7.01252 7.05522 7.14297 7.23771 7.58766 7.66751 7.79451 8.01122 8.16707 8.25742 8.54274 8.63288 8.87455 8.93968 10.23325 Molecular weight = 371.13amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.001542 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.536711 B =18158.728046 C =19334.981440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.082 4.082 12 C -0.003 4.003 13 N -0.639 5.639 14 C 0.535 3.465 15 O -0.523 6.523 16 C -0.086 4.086 17 C -0.103 4.103 18 C -0.085 4.085 19 C -0.150 4.150 20 C 0.440 3.560 21 O -0.444 6.444 22 C -0.154 4.154 23 C -0.084 4.084 24 C -0.127 4.127 25 C -0.094 4.094 26 C -0.128 4.128 27 C -0.068 4.068 28 C -0.066 4.066 29 C -0.075 4.075 30 C -0.117 4.117 31 C -0.142 4.142 32 H 0.278 0.722 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.395 0.605 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.092 0.908 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 -20.427 1.188 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.102 4.102 12 C -0.095 4.095 13 N -0.282 5.282 14 C 0.322 3.678 15 O -0.400 6.400 16 C -0.090 4.090 17 C -0.122 4.122 18 C -0.103 4.103 19 C -0.152 4.152 20 C 0.319 3.681 21 O -0.319 6.319 22 C -0.155 4.155 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.112 4.112 26 C -0.146 4.146 27 C -0.086 4.086 28 C -0.084 4.084 29 C -0.094 4.094 30 C -0.137 4.137 31 C -0.162 4.162 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.230 0.770 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.110 0.890 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.761 -20.801 1.085 25.530 hybrid contribution -0.352 0.894 0.089 0.965 sum -15.113 -19.908 1.174 25.022 Atomic orbital electron populations 1.69753 1.07301 1.28794 1.37944 1.25893 0.94963 1.01219 0.92467 0.86184 0.80252 0.80363 0.79125 1.19476 1.20277 1.18682 1.19530 0.94774 0.90175 1.44476 0.90514 1.17747 0.92112 0.91965 0.88217 1.20819 1.01306 0.94624 1.05882 1.20414 0.94078 0.97101 0.98601 1.17234 0.96839 0.85262 1.10204 1.42871 1.09725 1.04712 1.70886 1.18254 0.87531 0.83509 0.78531 1.90766 1.13155 1.86943 1.49147 1.20436 0.93777 0.94374 1.00385 1.21356 0.93120 0.98649 0.99078 1.21584 1.00658 0.91107 0.96984 1.20431 0.94516 0.94201 1.06004 1.20609 0.87687 0.87916 0.71908 1.90614 1.70911 1.34468 1.35924 1.20352 0.94416 0.99304 1.01458 1.21550 0.95257 0.96513 0.96837 1.21200 0.93567 0.99537 1.00232 1.21441 1.00333 0.94461 0.95010 1.21173 0.94563 0.99616 0.99240 1.21308 0.93700 0.95876 0.97740 1.21335 0.92730 0.98832 0.95548 1.21318 1.01446 0.90337 0.96292 1.20327 0.99314 0.93917 1.00133 1.21184 0.97173 0.95780 1.02045 0.91087 0.88500 0.87404 0.76976 0.84726 0.84050 0.84578 0.85092 0.85471 0.85287 0.85161 0.84224 0.83712 0.89035 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.49 10.60 55.55 0.59 -19.90 16 2 C 0.07 1.73 5.41 -17.33 -0.09 1.63 16 3 Si 0.92 18.64 29.56 -169.99 -5.03 13.61 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.07 9.03 -37.86 -0.34 -12.41 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.21 -5.15 9.74 -39.26 -0.38 -5.53 16 11 C -0.08 -1.93 8.61 -39.78 -0.34 -2.27 16 12 C 0.00 -0.07 6.30 -83.61 -0.53 -0.60 16 13 N -0.64 -10.84 5.24 -10.56 -0.06 -10.90 16 14 C 0.53 9.13 7.61 -12.28 -0.09 9.04 16 15 O -0.52 -10.91 13.75 5.34 0.07 -10.84 16 16 C -0.09 -1.12 5.88 -104.88 -0.62 -1.73 16 17 C -0.10 -1.02 9.52 -39.24 -0.37 -1.39 16 18 C -0.09 -0.74 8.19 -39.22 -0.32 -1.06 16 19 C -0.15 -1.51 5.79 -104.86 -0.61 -2.12 16 20 C 0.44 4.54 6.82 -31.76 -0.22 4.32 16 21 O -0.44 -5.66 16.87 5.34 0.09 -5.57 16 22 C -0.15 -1.31 5.44 -104.93 -0.57 -1.88 16 23 C -0.08 -0.56 7.57 -39.15 -0.30 -0.86 16 24 C -0.13 -0.71 10.03 -39.64 -0.40 -1.11 16 25 C -0.09 -0.50 10.04 -39.46 -0.40 -0.90 16 26 C -0.13 -0.76 10.03 -39.64 -0.40 -1.15 16 27 C -0.07 -0.52 9.62 -39.15 -0.38 -0.90 16 28 C -0.07 -0.71 9.58 -39.22 -0.38 -1.09 16 29 C -0.08 -0.91 9.58 -39.24 -0.38 -1.29 16 30 C -0.12 -2.59 9.90 -39.78 -0.39 -2.98 16 31 C -0.14 -3.57 8.61 -39.26 -0.34 -3.91 16 32 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 33 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 34 H 0.11 2.50 6.23 -52.48 -0.33 2.17 16 35 H 0.40 5.16 6.85 -40.82 -0.28 4.88 16 36 H 0.13 1.03 6.40 -52.48 -0.34 0.69 16 37 H 0.14 0.90 5.28 -52.49 -0.28 0.63 16 38 H 0.14 0.77 6.35 -52.49 -0.33 0.44 16 39 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.94 8.02 -52.49 -0.42 0.52 16 43 H 0.14 1.37 7.66 -52.49 -0.40 0.97 16 44 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 45 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 46 H 0.13 3.42 6.13 -52.49 -0.32 3.10 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -31.53 393.19 -11.59 -43.12 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -4.76 Total: 10.62 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -8.43 Total: -26.07 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.53 Total: -30.80 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.16 Total: -16.41 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.53 -11.59 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015029566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.455 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds