Wall clock time and date at job start Tue Mar 31 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 116.99456 * 2 1 4 4 C 1.38570 * 120.07508 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99566 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.14923 * 359.74544 * 5 4 3 7 7 C 1.38244 * 120.14488 * 0.50804 * 6 5 4 8 8 C 1.50701 * 119.99848 * 179.76866 * 7 6 5 9 9 C 1.53002 * 109.47192 * 264.72309 * 8 7 6 10 10 C 1.50693 * 109.47013 * 180.02562 * 9 8 7 11 11 O 1.21288 * 120.00547 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00115 * 180.02562 * 10 9 8 13 13 C 1.39981 * 120.00350 * 175.49199 * 12 10 9 14 14 C 1.38922 * 120.00283 * 215.12488 * 13 12 10 15 15 C 1.38008 * 120.00014 * 180.02562 * 14 13 12 16 16 C 1.38910 * 119.99976 * 0.02562 * 15 14 13 17 17 O 1.35774 * 119.99471 * 179.97438 * 16 15 14 18 18 C 1.34808 * 117.00313 * 5.34797 * 17 16 15 19 19 H 1.08002 * 120.00230 * 354.95457 * 18 17 16 20 20 C 1.38633 * 120.00210 * 174.96513 * 18 17 16 21 21 N 1.31575 * 119.99815 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00323 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47062 * 89.99532 * 22 20 18 24 24 H 1.48503 * 109.47117 * 209.99706 * 22 20 18 25 25 H 1.48505 * 109.47084 * 329.99459 * 22 20 18 26 26 C 1.38907 * 120.00174 * 0.25692 * 16 15 14 27 27 C 1.37999 * 120.00277 * 359.44446 * 26 16 15 28 28 C 1.38565 * 119.99783 * 359.49530 * 7 6 5 29 29 O 1.35997 * 120.07014 * 180.22973 * 28 7 6 30 30 C 1.42907 * 116.99805 * 89.99792 * 29 28 7 31 31 H 1.09003 * 109.46752 * 60.00656 * 1 2 3 32 32 H 1.08999 * 109.46526 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47395 * 300.00097 * 1 2 3 34 34 H 1.07997 * 120.00159 * 0.02562 * 4 3 2 35 35 H 1.07994 * 119.92117 * 179.97438 * 5 4 3 36 36 H 1.07994 * 119.92781 * 180.25712 * 6 5 4 37 37 H 1.08994 * 109.46950 * 144.72631 * 8 7 6 38 38 H 1.08996 * 109.47007 * 24.72622 * 8 7 6 39 39 H 1.09008 * 109.46923 * 60.00218 * 9 8 7 40 40 H 1.08997 * 109.46957 * 300.00352 * 9 8 7 41 41 H 0.97001 * 119.99577 * 355.49141 * 12 10 9 42 42 H 1.07997 * 119.99847 * 359.97438 * 14 13 12 43 43 H 1.07994 * 119.99782 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99968 * 180.02562 * 21 20 18 45 45 H 1.08008 * 119.99608 * 179.70477 * 26 16 15 46 46 H 1.07999 * 119.99955 * 180.28029 * 27 26 16 47 47 H 1.09001 * 109.46812 * 179.97438 * 30 29 28 48 48 H 1.09001 * 109.46997 * 299.99780 * 30 29 28 49 49 H 1.09004 * 109.46727 * 59.99973 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3028 3.6800 0.0042 7 6 4.0602 2.5235 -0.0005 8 6 5.5648 2.6082 0.0001 9 6 6.0817 2.5104 -1.4367 10 6 7.5863 2.5945 -1.4361 11 8 8.1863 2.7198 -0.3895 12 7 8.2653 2.5305 -2.5986 13 6 9.6544 2.7031 -2.6082 14 6 10.2672 3.3460 -3.6764 15 6 11.6368 3.5156 -3.6861 16 6 12.4027 3.0430 -2.6280 17 8 13.7501 3.2094 -2.6379 18 6 14.2696 3.9372 -3.6468 19 1 13.6309 4.2885 -4.4437 20 6 15.6236 4.2344 -3.6615 21 7 16.4016 3.8067 -2.6904 22 14 16.3435 5.2423 -5.0598 23 1 16.2839 6.6848 -4.7121 24 1 17.7571 4.8442 -5.2802 25 1 15.5618 4.9990 -6.2988 26 6 11.7906 2.3948 -1.5627 27 6 10.4205 2.2306 -1.5499 28 6 3.4359 1.2865 0.0000 29 8 4.1795 0.1478 0.0001 30 6 4.5347 -0.3950 1.2734 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2145 2.3197 -0.0005 35 1 1.3340 4.5115 -0.0019 36 1 3.7906 4.6435 0.0080 37 1 5.9746 1.7886 0.5901 38 1 5.8750 3.5588 0.4339 39 1 5.6718 3.3302 -2.0269 40 1 5.7714 1.5599 -1.8705 41 1 7.7914 2.3649 -3.4285 42 1 9.6718 3.7124 -4.4996 43 1 12.1131 4.0151 -4.5167 44 1 17.3489 4.0150 -2.7005 45 1 12.3868 2.0231 -0.7423 46 1 9.9443 1.7307 -0.7195 47 1 5.1252 -1.3000 1.1306 48 1 5.1199 0.3371 1.8300 49 1 3.6295 -0.6362 1.8307 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019600214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:01 Heat of formation + Delta-G solvation = -82.223442 kcal Electronic energy + Delta-G solvation = -31916.116425 eV Core-core repulsion = 27389.126042 eV Total energy + Delta-G solvation = -4526.990383 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.99112 -40.07916 -38.77416 -38.49730 -37.35376 -36.49633 -33.91560 -33.89088 -32.16126 -30.48990 -30.18424 -30.01722 -27.94045 -27.77026 -26.98117 -25.43040 -24.58244 -22.68027 -22.26404 -21.71358 -20.98550 -20.01532 -18.44992 -18.01904 -17.56199 -17.34558 -17.20881 -16.92501 -16.36107 -16.19853 -15.55833 -15.45421 -15.19240 -14.92406 -14.54400 -14.46851 -14.22976 -13.92518 -13.82673 -13.55154 -13.47189 -13.10110 -13.00485 -12.78422 -12.54862 -12.43911 -12.36537 -12.13056 -11.92540 -11.80122 -11.57317 -11.54464 -11.41170 -11.38151 -11.09593 -11.00207 -10.70379 -10.43895 -10.21602 -9.68766 -9.56475 -9.20985 -9.01963 -8.67790 -8.52784 -8.17356 -6.90105 -6.42160 -4.00278 0.75751 0.96797 2.13169 2.24271 2.78565 2.90276 3.06898 3.14559 3.15809 3.19808 3.38381 3.62721 3.98882 4.33460 4.42635 4.58495 4.62218 4.67782 4.75503 4.77845 4.86320 4.89776 5.02105 5.07452 5.08125 5.11866 5.13204 5.14508 5.30904 5.36452 5.41357 5.48420 5.59056 5.64879 5.78883 5.82797 5.96276 6.00592 6.17502 6.18724 6.26000 6.27093 6.32853 6.74263 6.84320 6.88950 7.02613 7.19836 7.25145 7.31414 7.43895 7.75923 7.82738 8.02349 8.42783 9.03187 9.74059 10.75856 Molecular weight = 371.16amu Principal moments of inertia in cm(-1) A = 0.026621 B = 0.001428 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.558430 B =19603.737031 C =20016.716184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.110 3.890 4 C -0.204 4.204 5 C -0.082 4.082 6 C -0.140 4.140 7 C -0.060 4.060 8 C -0.061 4.061 9 C -0.130 4.130 10 C 0.507 3.493 11 O -0.529 6.529 12 N -0.662 5.662 13 C 0.035 3.965 14 C -0.091 4.091 15 C -0.220 4.220 16 C 0.147 3.853 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.179 4.179 27 C -0.067 4.067 28 C 0.066 3.934 29 O -0.322 6.322 30 C 0.034 3.966 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.402 0.598 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.270 0.730 45 H 0.120 0.880 46 H 0.129 0.871 47 H 0.094 0.906 48 H 0.048 0.952 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.517 -4.123 4.027 34.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.065 3.935 4 C -0.223 4.223 5 C -0.100 4.100 6 C -0.158 4.158 7 C -0.060 4.060 8 C -0.098 4.098 9 C -0.170 4.170 10 C 0.294 3.706 11 O -0.405 6.405 12 N -0.306 5.306 13 C -0.058 4.058 14 C -0.111 4.111 15 C -0.240 4.240 16 C 0.093 3.907 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.199 4.199 27 C -0.087 4.087 28 C 0.022 3.978 29 O -0.239 6.239 30 C -0.060 4.060 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.236 0.764 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.138 0.862 46 H 0.147 0.853 47 H 0.113 0.887 48 H 0.066 0.934 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -32.529 -4.401 4.852 33.182 hybrid contribution -0.363 0.713 -1.042 1.314 sum -32.893 -3.688 3.810 33.317 Atomic orbital electron populations 1.23093 0.78511 1.04079 1.01302 1.86176 1.21153 1.26240 1.88471 1.19446 0.91601 0.84919 0.97581 1.21158 1.00048 0.91969 1.09099 1.20972 0.94567 0.97045 0.97459 1.20967 0.93540 0.97933 1.03356 1.20081 0.96493 0.91463 0.98013 1.20247 0.88752 1.04628 0.96210 1.21586 0.91805 1.04866 0.98778 1.20674 0.89781 0.76378 0.83770 1.90698 1.70296 1.48281 1.31238 1.43252 1.06376 1.71178 1.09827 1.17284 0.81544 1.07690 0.99250 1.20492 0.94545 0.98493 0.97549 1.20970 0.93166 1.08645 1.01229 1.19420 0.84956 0.93398 0.92943 1.83988 1.14525 1.62652 1.46913 1.21311 0.92832 1.31340 1.01310 0.89098 1.25282 0.95190 0.97610 0.98456 1.70050 1.05662 1.42818 1.31182 0.85718 0.78536 0.79387 0.79801 1.19910 1.20283 1.19231 1.20157 0.93690 1.07024 0.99053 1.20749 0.92217 0.98113 0.97654 1.17819 0.86204 0.86596 1.07192 1.86099 1.70153 1.38428 1.29187 1.23010 0.99648 0.98782 0.84548 0.92566 0.88133 0.92697 0.85142 0.85378 0.85097 0.89777 0.89725 0.88826 0.88316 0.76372 0.87198 0.85148 0.92048 0.86166 0.85291 0.88714 0.93379 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.84 10.28 -34.23 -0.35 -3.19 16 3 C 0.11 1.05 6.70 -39.12 -0.26 0.79 16 4 C -0.20 -1.51 9.04 -39.46 -0.36 -1.86 16 5 C -0.08 -0.57 10.04 -39.57 -0.40 -0.97 16 6 C -0.14 -1.11 9.67 -39.57 -0.38 -1.49 16 7 C -0.06 -0.57 5.14 -104.50 -0.54 -1.11 16 8 C -0.06 -0.62 4.36 -27.88 -0.12 -0.74 16 9 C -0.13 -1.29 5.68 -27.89 -0.16 -1.45 16 10 C 0.51 7.07 7.67 -10.99 -0.08 6.98 16 11 O -0.53 -9.42 13.42 5.55 0.07 -9.35 16 12 N -0.66 -9.15 5.34 -9.83 -0.05 -9.20 16 13 C 0.03 0.63 6.30 -83.63 -0.53 0.10 16 14 C -0.09 -1.65 9.96 -39.41 -0.39 -2.04 16 15 C -0.22 -4.79 9.16 -39.42 -0.36 -5.15 16 16 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 17 O -0.18 -5.13 9.75 0.04 0.00 -5.13 16 18 C -0.39 -11.00 9.48 30.88 0.29 -10.71 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.48 13.67 55.48 0.76 -24.73 16 22 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.18 -4.02 9.98 -39.42 -0.39 -4.42 16 27 C -0.07 -1.36 8.69 -39.41 -0.34 -1.70 16 28 C 0.07 0.70 5.71 -39.12 -0.22 0.47 16 29 O -0.32 -3.62 9.47 -34.24 -0.32 -3.94 16 30 C 0.03 0.30 10.80 101.05 1.09 1.39 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16 34 H 0.13 0.66 6.30 -52.49 -0.33 0.33 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.08 0.95 6.37 -51.93 -0.33 0.62 16 38 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 39 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.40 4.08 8.82 -40.82 -0.36 3.72 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 46 H 0.13 2.54 6.23 -52.49 -0.33 2.21 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.40 7.17 -51.93 -0.37 0.03 16 49 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 413.46 15.07 6.23 6.23 Total: -1.00 -35.33 413.46 -7.65 -42.98 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.44 Total: 7.22 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.52 Total: -16.44 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.71 Total: -33.93 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.60 Total: -21.62 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.33 -7.65 -42.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019600214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.244 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds