Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21292 * 120.00191 * 2 1 4 4 N 1.34778 * 119.99728 * 179.97438 * 2 1 3 5 5 C 1.40105 * 119.99934 * 185.18009 * 4 2 1 6 6 C 1.38847 * 120.01428 * 32.88415 * 5 4 2 7 7 C 1.38083 * 119.98229 * 180.02562 * 6 5 4 8 8 C 1.38725 * 120.02042 * 0.02905 * 7 6 5 9 9 O 1.35967 * 119.98820 * 179.97438 * 8 7 6 10 10 C 1.42900 * 117.00099 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47220 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47403 * 305.00084 * 11 10 9 13 13 O 1.42898 * 109.46704 * 65.00136 * 11 10 9 14 14 C 1.52998 * 109.46977 * 185.00139 * 11 10 9 15 15 O 1.42904 * 109.47043 * 175.00183 * 14 11 10 16 16 C 1.35678 * 117.00082 * 179.97438 * 15 14 11 17 17 C 1.39310 * 119.81610 * 180.02562 * 16 15 14 18 18 C 1.36436 * 120.18324 * 180.28373 * 17 16 15 19 19 C 1.40840 * 119.81098 * 359.49265 * 18 17 16 20 20 C 1.41213 * 120.17684 * 180.23121 * 19 18 17 21 21 H 1.08005 * 120.00004 * 205.06626 * 20 19 18 22 22 C 1.39892 * 120.00222 * 25.07615 * 20 19 18 23 23 N 1.30881 * 119.99715 * 17.44599 * 22 20 19 24 24 Si 1.86797 * 119.99956 * 197.44755 * 22 20 19 25 25 H 1.48506 * 109.46908 * 94.67130 * 24 22 20 26 26 H 1.48501 * 109.47206 * 214.66839 * 24 22 20 27 27 H 1.48503 * 109.47166 * 334.67313 * 24 22 20 28 28 C 1.40831 * 119.64136 * 0.50433 * 19 18 17 29 29 C 1.36436 * 119.81065 * 359.75134 * 28 19 18 30 30 C 1.38725 * 120.02591 * 0.22732 * 8 7 6 31 31 C 1.38092 * 120.01171 * 359.49191 * 30 8 7 32 32 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47053 * 299.99874 * 1 2 3 34 34 H 1.08996 * 109.47347 * 59.99748 * 1 2 3 35 35 H 0.97002 * 119.99838 * 5.18551 * 4 2 1 36 36 H 1.07998 * 120.00454 * 0.02562 * 6 5 4 37 37 H 1.08004 * 119.99194 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.46985 * 59.99844 * 10 9 8 39 39 H 1.08995 * 109.47388 * 300.00068 * 10 9 8 40 40 H 0.96696 * 114.00074 * 60.00249 * 13 11 10 41 41 H 1.08996 * 109.47171 * 55.00171 * 14 11 10 42 42 H 1.09005 * 109.47236 * 295.00211 * 14 11 10 43 43 H 1.08001 * 119.90954 * 0.02562 * 17 16 15 44 44 H 1.08000 * 120.09407 * 179.72779 * 18 17 16 45 45 H 0.96999 * 119.99712 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.09544 * 179.72719 * 28 19 18 47 47 H 1.07997 * 119.91042 * 179.97438 * 29 28 19 48 48 H 1.07999 * 119.98903 * 179.72943 * 30 8 7 49 49 H 1.07998 * 120.00021 * 180.22953 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5777 -1.1697 0.1101 6 6 4.2173 -0.1915 0.8596 7 6 5.5939 -0.1943 0.9667 8 6 6.3380 -1.1737 0.3252 9 8 7.6936 -1.1755 0.4307 10 6 8.3963 -2.2135 -0.2554 11 6 9.8998 -2.0518 -0.0223 12 1 10.2078 -1.0491 -0.3188 13 8 10.1910 -2.2495 1.3627 14 6 10.6592 -3.0859 -0.8559 15 8 12.0647 -2.8607 -0.7292 16 6 12.8866 -3.6979 -1.4107 17 6 14.2673 -3.5318 -1.3286 18 6 15.1006 -4.3658 -2.0153 19 6 14.5615 -5.4035 -2.8002 20 6 15.4169 -6.2742 -3.5103 21 1 15.0582 -6.7825 -4.3931 22 6 16.7290 -6.4785 -3.0702 23 7 17.0669 -6.1552 -1.8478 24 14 17.9986 -7.2127 -4.2271 25 1 18.7587 -6.1200 -4.8855 26 1 18.9333 -8.0710 -3.4559 27 1 17.3129 -8.0306 -5.2597 28 6 13.1645 -5.5645 -2.8777 29 6 12.3451 -4.7186 -2.1890 30 6 5.6999 -2.1482 -0.4282 31 6 4.3229 -2.1500 -0.5314 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.6988 -2.0056 -0.0750 36 1 3.6381 0.5713 1.3587 37 1 6.0916 0.5663 1.5501 38 1 8.1857 -2.1507 -1.3229 39 1 8.0719 -3.1830 0.1225 40 1 9.9429 -3.1227 1.6960 41 1 10.3692 -2.9929 -1.9024 42 1 10.4182 -4.0876 -0.4997 43 1 14.6792 -2.7380 -0.7230 44 1 16.1706 -4.2329 -1.9541 45 1 17.9766 -6.2972 -1.5425 46 1 12.7432 -6.3550 -3.4809 47 1 11.2736 -4.8403 -2.2476 48 1 6.2801 -2.9078 -0.9310 49 1 3.8261 -2.9109 -1.1149 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027211794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -112.988459 kcal Electronic energy + Delta-G solvation = -31003.735347 eV Core-core repulsion = 26475.410893 eV Total energy + Delta-G solvation = -4528.324454 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.02462 -40.03126 -39.03904 -37.96215 -37.00178 -35.99871 -34.79790 -33.34952 -31.63263 -31.22442 -30.80583 -29.73194 -29.06000 -28.32359 -26.39510 -24.69383 -23.53569 -22.73201 -22.13220 -20.85859 -20.71524 -20.61479 -18.61739 -18.02911 -17.57060 -17.37979 -17.12359 -16.88646 -16.52357 -15.99265 -15.52935 -15.40304 -15.23546 -14.89783 -14.54936 -14.28442 -14.02624 -13.97311 -13.82249 -13.64637 -13.50430 -13.21860 -13.10726 -12.89168 -12.81287 -12.61207 -12.31111 -12.18259 -11.84051 -11.66332 -11.45165 -11.36341 -11.17596 -10.97825 -10.80132 -10.64241 -10.50059 -10.22089 -10.15727 -10.00480 -9.85073 -9.36992 -9.34273 -9.06565 -8.06751 -7.68132 -7.06885 -6.74795 -4.29005 0.94347 0.99384 2.10792 2.56763 2.73420 2.74713 2.91470 3.07439 3.10890 3.18676 3.44061 3.92911 3.96924 4.17654 4.25241 4.41137 4.53750 4.55713 4.58993 4.67974 4.73439 4.80997 4.89436 4.95137 5.02926 5.07639 5.15621 5.18578 5.25484 5.48115 5.54107 5.63485 5.64803 5.87708 5.91152 5.98472 6.00219 6.08267 6.18707 6.47343 6.68550 6.88212 6.94022 7.07306 7.11942 7.15292 7.42000 7.52049 7.58510 7.60928 7.74542 7.97651 8.17074 8.40256 8.61592 8.87052 8.95020 10.19856 Molecular weight = 371.16amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.001209 C = 0.001173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.915965 B =23154.093637 C =23854.740159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.528 6.528 4 N -0.672 5.672 5 C 0.100 3.900 6 C -0.080 4.080 7 C -0.131 4.131 8 C 0.121 3.879 9 O -0.300 6.300 10 C 0.031 3.969 11 C 0.114 3.886 12 H 0.117 0.883 13 O -0.541 6.541 14 C 0.042 3.958 15 O -0.314 6.314 16 C -0.012 4.012 17 C -0.117 4.117 18 C -0.133 4.133 19 C 0.089 3.911 20 C -0.464 4.464 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.798 5.798 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.199 4.199 29 C -0.168 4.168 30 C -0.191 4.191 31 C -0.103 4.103 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.410 0.590 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.373 0.627 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.280 0.720 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.133 0.867 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.433 6.171 4.465 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.403 6.403 4 N -0.318 5.318 5 C 0.006 3.994 6 C -0.100 4.100 7 C -0.151 4.151 8 C 0.075 3.925 9 O -0.213 6.213 10 C -0.045 4.045 11 C 0.054 3.946 12 H 0.135 0.865 13 O -0.346 6.346 14 C -0.035 4.035 15 O -0.230 6.230 16 C -0.055 4.055 17 C -0.136 4.136 18 C -0.152 4.152 19 C 0.087 3.913 20 C -0.494 4.494 21 H 0.095 0.905 22 C -0.142 4.142 23 N -0.424 5.424 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.219 4.219 29 C -0.186 4.186 30 C -0.211 4.211 31 C -0.123 4.123 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.246 0.754 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.220 0.780 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.151 0.849 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.449 7.826 4.810 29.896 hybrid contribution -0.117 -1.922 -0.870 2.113 sum -28.566 5.904 3.940 29.435 Atomic orbital electron populations 1.21859 0.90706 1.04568 1.05786 1.21031 0.90903 0.83199 0.75253 1.90764 1.70446 1.31234 1.47885 1.43650 1.05232 1.09785 1.73122 1.17621 0.82735 0.98825 1.00186 1.20934 0.93560 0.98422 0.97059 1.20363 0.92646 0.99323 1.02728 1.19064 0.82765 0.94878 0.95772 1.86161 1.15388 1.50172 1.69586 1.23461 0.93033 0.90507 0.97455 1.21848 0.88988 1.01273 0.82483 0.86502 1.86685 1.86079 1.38606 1.23202 1.22928 0.83192 0.97860 0.99507 1.85883 1.14011 1.54393 1.68729 1.18611 0.89677 0.95652 1.01525 1.19842 0.89796 1.01233 1.02689 1.20987 0.99292 0.94719 1.00208 1.17606 0.91059 0.91301 0.91380 1.19485 0.95565 1.23614 1.10714 0.90519 1.25879 0.99354 0.94154 0.94796 1.69832 1.20139 1.37327 1.15120 0.86309 0.80102 0.79452 0.80892 1.19363 1.20323 1.18665 1.20554 0.93857 1.01576 1.05881 1.20378 0.97540 0.98426 1.02290 1.21082 0.94961 1.01091 1.03923 1.20644 0.93249 0.99336 0.99111 0.90315 0.88260 0.88350 0.75407 0.84228 0.84604 0.90676 0.91254 0.78029 0.92061 0.92545 0.88356 0.85648 0.90879 0.88743 0.88980 0.84933 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.42 10.39 36.01 0.37 -0.05 16 2 C 0.51 3.56 7.68 -10.98 -0.08 3.47 16 3 O -0.53 -6.16 14.75 5.55 0.08 -6.08 16 4 N -0.67 -3.91 5.35 -9.83 -0.05 -3.96 16 5 C 0.10 0.86 6.29 -83.63 -0.53 0.33 16 6 C -0.08 -0.81 8.65 -39.41 -0.34 -1.15 16 7 C -0.13 -1.39 9.98 -39.46 -0.39 -1.79 16 8 C 0.12 1.31 6.69 -39.22 -0.26 1.05 16 9 O -0.30 -3.55 10.10 -24.49 -0.25 -3.80 16 10 C 0.03 0.31 4.37 37.16 0.16 0.47 16 11 C 0.11 1.42 3.53 -26.73 -0.09 1.33 16 12 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 13 O -0.54 -7.47 13.27 -49.80 -0.66 -8.13 16 14 C 0.04 0.61 4.37 37.16 0.16 0.77 16 15 O -0.31 -6.30 10.09 -23.58 -0.24 -6.54 16 16 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 17 C -0.12 -2.82 9.92 -39.83 -0.40 -3.22 16 18 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 19 C 0.09 2.35 5.57 -106.80 -0.59 1.75 16 20 C -0.46 -12.20 9.04 -37.83 -0.34 -12.54 16 21 H 0.08 1.94 7.90 -52.48 -0.41 1.52 16 22 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 23 N -0.80 -20.55 10.97 55.54 0.61 -19.94 16 24 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 16 29 C -0.17 -3.68 8.96 -39.83 -0.36 -4.03 16 30 C -0.19 -1.70 9.03 -39.46 -0.36 -2.06 16 31 C -0.10 -0.80 9.96 -39.41 -0.39 -1.19 16 32 H 0.08 -0.01 7.92 -51.93 -0.41 -0.42 16 33 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.41 0.90 8.66 -40.82 -0.35 0.54 16 36 H 0.14 1.47 6.38 -52.49 -0.33 1.13 16 37 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.08 0.63 7.65 -51.93 -0.40 0.23 16 39 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 40 H 0.37 3.73 9.04 45.56 0.41 4.14 16 41 H 0.06 0.82 7.65 -51.93 -0.40 0.42 16 42 H 0.06 0.75 7.65 -51.93 -0.40 0.36 16 43 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 44 H 0.13 3.34 6.18 -52.49 -0.32 3.01 16 45 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 46 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 47 H 0.09 1.70 6.27 -52.49 -0.33 1.37 16 48 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16 49 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 414.31 15.07 6.24 6.24 Total: -1.00 -34.11 414.31 -9.58 -43.68 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.77 Total: 9.58 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -4.51 Total: -24.56 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.56 Total: -23.91 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.06 Total: -24.55 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.11 -9.58 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027211794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.304 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds