Wall clock time and date at job start Tue Mar 31 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21292 * 119.99819 * 2 1 4 4 N 1.34778 * 120.00049 * 180.02562 * 2 1 3 5 5 C 1.40113 * 119.99828 * 175.46349 * 4 2 1 6 6 C 1.38844 * 120.01020 * 215.93332 * 5 4 2 7 7 C 1.38098 * 119.98302 * 180.25442 * 6 5 4 8 8 C 1.38723 * 120.00967 * 359.45204 * 7 6 5 9 9 O 1.35972 * 119.98234 * 180.29723 * 8 7 6 10 10 C 1.42896 * 117.00286 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.46807 * 54.99889 * 11 10 9 13 13 O 1.42902 * 109.46909 * 295.00250 * 11 10 9 14 14 C 1.52993 * 109.47322 * 174.99965 * 11 10 9 15 15 O 1.42904 * 109.47437 * 185.00067 * 14 11 10 16 16 C 1.35674 * 117.00563 * 179.97438 * 15 14 11 17 17 C 1.39319 * 119.81320 * 359.72851 * 16 15 14 18 18 C 1.36442 * 120.18243 * 179.76192 * 17 16 15 19 19 C 1.40833 * 119.80770 * 0.50803 * 18 17 16 20 20 C 1.41220 * 120.17447 * 179.72592 * 19 18 17 21 21 H 1.07997 * 120.00227 * 24.69081 * 20 19 18 22 22 C 1.39887 * 119.99607 * 204.69786 * 20 19 18 23 23 N 1.30877 * 120.00219 * 15.48450 * 22 20 19 24 24 Si 1.86802 * 119.99882 * 195.48642 * 22 20 19 25 25 H 1.48496 * 109.47051 * 59.99796 * 24 22 20 26 26 H 1.48501 * 109.47091 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46812 * 299.99883 * 24 22 20 28 28 C 1.40835 * 119.64649 * 359.73932 * 19 18 17 29 29 C 1.36439 * 119.80737 * 0.02562 * 28 19 18 30 30 C 1.38715 * 120.03398 * 0.27585 * 8 7 6 31 31 C 1.38095 * 120.01430 * 359.97438 * 30 8 7 32 32 H 1.09002 * 109.46706 * 269.99961 * 1 2 3 33 33 H 1.08996 * 109.46944 * 29.99946 * 1 2 3 34 34 H 1.08996 * 109.47475 * 149.99968 * 1 2 3 35 35 H 0.97003 * 119.99513 * 355.45978 * 4 2 1 36 36 H 1.08001 * 120.01404 * 0.02562 * 6 5 4 37 37 H 1.07990 * 119.99087 * 179.73225 * 7 6 5 38 38 H 1.09006 * 109.46993 * 300.00230 * 10 9 8 39 39 H 1.09001 * 109.46759 * 59.99759 * 10 9 8 40 40 H 0.96701 * 114.00093 * 299.99147 * 13 11 10 41 41 H 1.09007 * 109.47332 * 305.00043 * 14 11 10 42 42 H 1.09002 * 109.47538 * 64.99839 * 14 11 10 43 43 H 1.08004 * 119.90663 * 0.02562 * 17 16 15 44 44 H 1.07998 * 120.09092 * 180.25231 * 18 17 16 45 45 H 0.97002 * 120.00639 * 179.97438 * 23 22 20 46 46 H 1.07990 * 120.09281 * 179.97438 * 28 19 18 47 47 H 1.07995 * 119.90499 * 179.97438 * 29 28 19 48 48 H 1.07997 * 119.99468 * 180.02562 * 30 8 7 49 49 H 1.07996 * 120.00962 * 180.02562 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5788 -1.1690 -0.0965 6 6 4.2246 -2.1703 -0.8094 7 6 5.6026 -2.1744 -0.8992 8 6 6.3409 -1.1722 -0.2869 9 8 7.6974 -1.1735 -0.3808 10 6 8.3941 -0.1118 0.2744 11 6 9.8994 -0.2801 0.0589 12 1 10.1087 -0.3435 -1.0089 13 8 10.3418 -1.4766 0.7028 14 6 10.6371 0.9215 0.6528 15 8 12.0302 0.8223 0.3502 16 6 12.8323 1.8165 0.8075 17 6 12.2825 2.8725 1.5311 18 6 13.0828 3.8737 1.9987 19 6 14.4666 3.8430 1.7388 20 6 15.3013 4.8782 2.2141 21 1 15.0044 5.4590 3.0749 22 6 16.5125 5.1516 1.5699 23 7 16.7387 4.6750 0.3721 24 14 17.8070 6.1967 2.4191 25 1 18.2154 5.5439 3.6888 26 1 18.9895 6.3378 1.5318 27 1 17.2451 7.5398 2.7114 28 6 15.0135 2.7745 1.0021 29 6 14.2000 1.7788 0.5458 30 6 5.6960 -0.1684 0.4207 31 6 4.3183 -0.1660 0.5157 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3634 -0.8899 -0.5138 35 1 1.6981 -2.0059 0.0656 36 1 3.6497 -2.9477 -1.2904 37 1 6.1053 -2.9555 -1.4500 38 1 8.0727 0.8439 -0.1400 39 1 8.1743 -0.1372 1.3417 40 1 10.1871 -1.4900 1.6573 41 1 10.2371 1.8410 0.2255 42 1 10.5002 0.9338 1.7341 43 1 11.2205 2.8964 1.7260 44 1 12.6556 4.6895 2.5629 45 1 17.5784 4.8648 -0.0749 46 1 16.0736 2.7440 0.7983 47 1 14.6177 0.9589 -0.0196 48 1 6.2713 0.6117 0.8968 49 1 3.8162 0.6158 1.0662 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027211798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:53 Heat of formation + Delta-G solvation = -112.533645 kcal Electronic energy + Delta-G solvation = -31097.189171 eV Core-core repulsion = 26568.884440 eV Total energy + Delta-G solvation = -4528.304732 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.01293 -40.01148 -39.02361 -37.95801 -36.99336 -35.98743 -34.77716 -33.33257 -31.66127 -31.13442 -30.82760 -29.72097 -29.03405 -28.32651 -26.33085 -24.66644 -23.63939 -22.76087 -21.86719 -20.95316 -20.71112 -20.62040 -18.55209 -18.14548 -17.45615 -17.36627 -17.15095 -16.88666 -16.48425 -16.03066 -15.42757 -15.35370 -15.17461 -14.97104 -14.56564 -14.26477 -13.99003 -13.95690 -13.82344 -13.70334 -13.52727 -13.27544 -12.98376 -12.90562 -12.69890 -12.61203 -12.27666 -12.16739 -11.81128 -11.68302 -11.45597 -11.32755 -11.13178 -10.97865 -10.80177 -10.65255 -10.44363 -10.20737 -10.11199 -9.98413 -9.85682 -9.35167 -9.34409 -9.04809 -8.08315 -7.65881 -7.04425 -6.71561 -4.27765 0.92612 1.03985 2.10172 2.58099 2.73803 2.77622 2.93745 3.07774 3.10188 3.21088 3.43419 3.94124 3.97627 4.18932 4.26351 4.50571 4.53495 4.61364 4.62017 4.70121 4.74569 4.79814 4.88898 4.97616 5.03930 5.10209 5.15022 5.19478 5.28692 5.48008 5.51846 5.65576 5.70502 5.89275 5.94525 6.02857 6.05743 6.07027 6.20618 6.45849 6.70525 6.89200 6.96150 7.09095 7.12294 7.17558 7.44886 7.53934 7.58497 7.62687 7.76789 7.99135 8.19823 8.42204 8.63359 8.89055 8.96849 10.22276 Molecular weight = 371.16amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.001292 C = 0.001224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.802438 B =21666.511141 C =22864.755812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.528 6.528 4 N -0.672 5.672 5 C 0.096 3.904 6 C -0.102 4.102 7 C -0.134 4.134 8 C 0.122 3.878 9 O -0.300 6.300 10 C 0.031 3.969 11 C 0.114 3.886 12 H 0.117 0.883 13 O -0.542 6.542 14 C 0.042 3.958 15 O -0.315 6.315 16 C -0.011 4.011 17 C -0.168 4.168 18 C -0.198 4.198 19 C 0.087 3.913 20 C -0.462 4.462 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.801 5.801 24 Si 0.909 3.091 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.132 4.132 29 C -0.118 4.118 30 C -0.193 4.193 31 C -0.077 4.077 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.410 0.590 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.372 0.628 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.281 0.719 46 H 0.129 0.871 47 H 0.098 0.902 48 H 0.132 0.868 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.822 -13.688 -0.729 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.403 6.403 4 N -0.319 5.319 5 C 0.002 3.998 6 C -0.122 4.122 7 C -0.153 4.153 8 C 0.076 3.924 9 O -0.214 6.214 10 C -0.045 4.045 11 C 0.055 3.945 12 H 0.135 0.865 13 O -0.346 6.346 14 C -0.035 4.035 15 O -0.230 6.230 16 C -0.054 4.054 17 C -0.187 4.187 18 C -0.218 4.218 19 C 0.085 3.915 20 C -0.492 4.492 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.427 5.427 24 Si 0.734 3.266 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.152 4.152 29 C -0.137 4.137 30 C -0.212 4.212 31 C -0.097 4.097 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.246 0.754 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.219 0.781 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.147 0.853 47 H 0.116 0.884 48 H 0.150 0.850 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.901 -13.338 -1.752 30.975 hybrid contribution -0.128 0.765 1.100 1.346 sum -28.028 -12.573 -0.652 30.726 Atomic orbital electron populations 1.21891 0.90687 1.05351 1.05142 1.21038 0.90911 0.83203 0.75250 1.90754 1.70421 1.31314 1.47835 1.43562 1.05116 1.09792 1.73394 1.17627 0.82551 0.98642 1.00945 1.20689 0.93786 0.99252 0.98515 1.20227 0.92499 0.99358 1.03232 1.19074 0.82747 0.94705 0.95830 1.86142 1.15403 1.48522 1.71289 1.23470 0.93096 0.90291 0.97634 1.21843 0.87969 0.84776 0.99945 0.86483 1.86680 1.84682 1.38135 1.25114 1.22929 0.83565 0.97466 0.99563 1.85878 1.15813 1.46082 1.75255 1.18623 0.90390 0.90949 1.05449 1.20386 0.97745 0.96773 1.03814 1.20560 0.93767 0.99489 1.07983 1.17612 0.90831 0.92032 0.91016 1.19447 1.02166 1.14942 1.12694 0.90615 1.25877 0.98831 0.95574 0.93981 1.69803 1.24435 1.37733 1.10722 0.86353 0.79622 0.80490 0.80142 1.18892 1.20355 1.19116 1.21059 0.99630 0.92793 1.01692 1.19853 0.90215 1.00093 1.03507 1.21228 0.95218 1.00364 1.04386 1.21047 0.92781 0.98244 0.97589 0.88483 0.88409 0.89890 0.75412 0.85033 0.84563 0.90593 0.91236 0.78061 0.92005 0.92543 0.88963 0.88743 0.90846 0.85309 0.88370 0.85018 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.45 10.31 36.01 0.37 -0.08 16 2 C 0.51 3.65 7.78 -10.98 -0.09 3.56 16 3 O -0.53 -6.31 14.57 5.55 0.08 -6.23 16 4 N -0.67 -3.90 5.34 -9.83 -0.05 -3.96 16 5 C 0.10 0.83 6.29 -83.62 -0.53 0.30 16 6 C -0.10 -0.78 9.96 -39.41 -0.39 -1.17 16 7 C -0.13 -1.24 9.98 -39.45 -0.39 -1.63 16 8 C 0.12 1.33 6.69 -39.23 -0.26 1.06 16 9 O -0.30 -3.56 10.10 -24.51 -0.25 -3.81 16 10 C 0.03 0.32 4.37 37.15 0.16 0.48 16 11 C 0.11 1.45 3.53 -26.74 -0.09 1.36 16 12 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 13 O -0.54 -7.43 13.27 -49.80 -0.66 -8.09 16 14 C 0.04 0.62 4.37 37.15 0.16 0.78 16 15 O -0.31 -6.38 10.09 -23.57 -0.24 -6.62 16 16 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 17 C -0.17 -3.76 8.96 -39.83 -0.36 -4.12 16 18 C -0.20 -4.85 9.74 -39.25 -0.38 -5.23 16 19 C 0.09 2.33 5.58 -106.80 -0.60 1.74 16 20 C -0.46 -12.27 9.05 -37.83 -0.34 -12.61 16 21 H 0.08 1.92 7.89 -52.49 -0.41 1.51 16 22 C 0.07 1.86 5.19 -17.34 -0.09 1.77 16 23 N -0.80 -20.75 10.82 55.54 0.60 -20.15 16 24 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 29 C -0.12 -2.87 9.92 -39.83 -0.40 -3.27 16 30 C -0.19 -1.99 9.03 -39.46 -0.36 -2.35 16 31 C -0.08 -0.80 8.69 -39.41 -0.34 -1.14 16 32 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 35 H 0.41 0.84 8.83 -40.82 -0.36 0.48 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 39 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.37 3.69 9.05 45.56 0.41 4.10 16 41 H 0.06 0.87 7.63 -51.92 -0.40 0.47 16 42 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 43 H 0.09 1.75 6.27 -52.48 -0.33 1.42 16 44 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 45 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 46 H 0.13 3.45 6.07 -52.49 -0.32 3.13 16 47 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 48 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 49 H 0.14 1.56 6.27 -52.49 -0.33 1.23 16 LS Contribution 414.26 15.07 6.24 6.24 Total: -1.00 -34.26 414.26 -9.60 -43.86 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.78 Total: 9.94 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -4.52 Total: -24.86 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.55 Total: -24.11 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.07 Total: -24.75 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.26 -9.60 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027211798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.676 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds