Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35950 * 117.00180 * 2 1 4 4 C 1.37991 * 119.99335 * 359.72146 * 3 2 1 5 5 C 1.40184 * 119.82311 * 179.77619 * 4 3 2 6 6 C 1.46518 * 120.09840 * 180.25257 * 5 4 3 7 7 C 1.36561 * 119.99947 * 143.78489 * 6 5 4 8 8 C 1.47263 * 127.48977 * 351.62908 * 7 6 5 9 9 O 1.21764 * 126.01920 * 0.02562 * 8 7 6 10 10 N 1.34377 * 107.95964 * 179.87723 * 8 7 6 11 11 C 1.39048 * 111.40070 * 0.40394 * 10 8 7 12 12 C 1.39061 * 131.68215 * 179.72105 * 11 10 8 13 13 C 1.38000 * 120.14014 * 180.02562 * 12 11 10 14 14 C 1.38600 * 120.61870 * 359.97438 * 13 12 11 15 15 Cl 1.73602 * 119.97028 * 180.02562 * 14 13 12 16 16 C 1.38128 * 120.05556 * 0.02562 * 14 13 12 17 17 C 1.39096 * 119.71469 * 0.02562 * 16 14 13 18 18 C 1.40244 * 119.80880 * 0.52141 * 5 4 3 19 19 C 1.37566 * 119.98026 * 359.73129 * 18 5 4 20 20 C 1.39129 * 120.17971 * 359.97438 * 19 18 5 21 21 O 1.35563 * 119.90088 * 179.97438 * 20 19 18 22 22 C 1.34738 * 117.00229 * 354.37649 * 21 20 19 23 23 H 1.08001 * 120.00130 * 5.07748 * 22 21 20 24 24 C 1.38737 * 119.99841 * 185.07748 * 22 21 20 25 25 N 1.31498 * 120.00033 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99927 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47217 * 59.99871 * 26 24 22 28 28 H 1.48494 * 109.47187 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46834 * 300.00190 * 26 24 22 30 30 H 1.08999 * 109.47057 * 300.00016 * 1 2 3 31 31 H 1.08997 * 109.46774 * 60.00232 * 1 2 3 32 32 H 1.08995 * 109.47309 * 180.02562 * 1 2 3 33 33 H 1.08005 * 120.08818 * 0.02562 * 4 3 2 34 34 H 1.07992 * 119.99615 * 323.79237 * 6 5 4 35 35 H 0.97007 * 124.30291 * 180.14381 * 10 8 7 36 36 H 1.07996 * 119.92897 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.69335 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.14167 * 179.97438 * 16 14 13 39 39 H 1.07994 * 120.01147 * 179.70653 * 18 5 4 40 40 H 1.08001 * 119.90557 * 180.02562 * 19 18 5 41 41 H 0.97002 * 119.99965 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2946 2.3685 -0.0058 5 6 1.9348 3.6157 -0.0010 6 6 1.1425 4.8482 -0.0016 7 6 1.5735 5.9371 0.7009 8 6 2.7036 6.0065 1.6425 9 8 3.4414 5.0862 1.9446 10 7 2.7791 7.2651 2.1071 11 6 1.7813 8.0671 1.5643 12 6 1.4694 9.4093 1.7517 13 6 0.4053 9.9739 1.0784 14 6 -0.3634 9.2151 0.2100 15 17 -1.6978 9.9428 -0.6288 16 6 -0.0686 7.8803 0.0112 17 6 1.0015 7.3026 0.6865 18 6 3.3357 3.6802 -0.0015 19 6 4.0772 2.5215 -0.0010 20 6 3.4412 1.2841 0.0005 21 8 4.1775 0.1458 0.0005 22 6 5.5128 0.2810 -0.1187 23 1 5.9575 1.2652 -0.1260 24 6 6.3165 -0.8441 -0.2319 25 7 5.7752 -2.0425 -0.2225 26 14 8.1678 -0.6568 -0.3963 27 1 8.7021 0.0471 0.7971 28 1 8.7939 -1.9993 -0.5001 29 1 8.4792 0.1309 -1.6162 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2160 2.3136 -0.0099 34 1 0.2178 4.8954 -0.5574 35 1 3.4430 7.5741 2.7434 36 1 2.0612 10.0110 2.4255 37 1 0.1693 11.0169 1.2297 38 1 -0.6669 7.2876 -0.6649 39 1 3.8322 4.6392 -0.0026 40 1 5.1560 2.5726 -0.0009 41 1 6.3371 -2.8292 -0.3021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033361034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -9.601192 kcal Electronic energy + Delta-G solvation = -29515.326232 eV Core-core repulsion = 25160.527962 eV Total energy + Delta-G solvation = -4354.798270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 371.076 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49936 -39.66533 -38.50783 -37.67919 -36.86238 -36.38975 -35.29491 -33.51077 -32.46919 -30.91452 -29.67274 -29.26170 -28.21879 -26.63620 -25.70935 -24.70492 -22.74950 -21.97047 -21.56939 -21.43328 -19.15595 -18.21774 -17.96389 -17.61789 -16.92576 -16.37354 -16.09344 -15.49318 -15.38804 -15.18766 -14.93930 -14.69305 -14.42303 -14.27671 -14.01150 -13.81279 -13.59209 -13.57506 -13.42930 -12.93964 -12.78152 -12.45346 -12.15884 -11.82619 -11.78671 -11.59253 -11.52976 -11.16427 -11.13297 -11.00688 -10.78709 -10.70169 -10.51395 -10.50227 -10.17306 -9.71377 -9.56653 -9.05677 -8.67915 -8.03174 -7.86431 -6.84217 -6.64478 -4.11966 0.23700 0.91425 1.44630 1.91026 2.20989 2.42222 2.95610 3.05707 3.07587 3.09759 3.34031 3.51737 3.82955 3.96442 4.23373 4.37822 4.46990 4.52761 4.80851 4.90284 4.95937 5.00553 5.08967 5.23757 5.40247 5.49090 5.53497 5.58590 5.68280 5.72866 5.82563 5.88979 5.93490 5.99678 6.16971 6.21965 6.30433 6.37486 6.52346 6.76219 6.81648 6.89404 7.01521 7.11718 7.31389 7.52318 7.77674 8.10577 8.13910 8.78568 9.47817 10.50819 Molecular weight = 371.08amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.002157 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.718845 B =12980.192502 C =14378.521845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.043 3.957 4 C -0.128 4.128 5 C -0.194 4.194 6 C 0.095 3.905 7 C -0.233 4.233 8 C 0.554 3.446 9 O -0.484 6.484 10 N -0.658 5.658 11 C 0.146 3.854 12 C -0.128 4.128 13 C -0.087 4.087 14 C -0.058 4.058 15 Cl -0.074 7.074 16 C -0.068 4.068 17 C -0.069 4.069 18 C 0.001 3.999 19 C -0.231 4.231 20 C 0.157 3.843 21 O -0.142 6.142 22 C -0.386 4.386 23 H 0.099 0.901 24 C 0.041 3.959 25 N -0.841 5.841 26 Si 0.946 3.054 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.266 1.266 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.414 0.586 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 20.397 0.942 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C -0.001 4.001 4 C -0.148 4.148 5 C -0.196 4.196 6 C 0.076 3.924 7 C -0.237 4.237 8 C 0.346 3.654 9 O -0.359 6.359 10 N -0.300 5.300 11 C 0.046 3.954 12 C -0.150 4.150 13 C -0.106 4.106 14 C -0.085 4.085 15 Cl -0.045 7.045 16 C -0.087 4.087 17 C -0.072 4.072 18 C -0.018 4.018 19 C -0.251 4.251 20 C 0.100 3.900 21 O -0.042 6.042 22 C -0.461 4.461 23 H 0.116 0.884 24 C -0.166 4.166 25 N -0.473 5.473 26 Si 0.769 3.231 27 H -0.191 1.191 28 H -0.200 1.200 29 H -0.191 1.191 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.252 0.748 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.093 19.059 1.005 22.075 hybrid contribution 0.783 0.687 0.307 1.086 sum -10.311 19.747 1.313 22.315 Atomic orbital electron populations 1.22892 0.80339 1.02990 1.00266 1.86231 1.19432 1.26221 1.89923 1.17939 0.89278 0.84531 1.08401 1.20757 0.98278 0.90712 1.05030 1.18009 0.92989 0.90955 1.17609 1.22173 0.94309 0.89539 0.86404 1.20248 1.02809 0.93466 1.07172 1.18364 0.84475 0.81162 0.81420 1.91022 1.45174 1.38239 1.61449 1.43460 1.30864 1.10693 1.44992 1.18306 0.89967 0.92107 0.94972 1.20129 0.99643 0.91820 1.03393 1.20675 0.94282 0.99976 0.95667 1.20514 0.93960 0.93577 1.00495 1.98363 1.45779 1.83092 1.77254 1.20304 0.96175 0.92826 0.99363 1.18819 0.96346 0.93340 0.98743 1.20925 0.91933 0.97410 0.91501 1.20758 1.00662 0.90606 1.13071 1.18944 0.88236 0.87494 0.95353 1.83946 1.19812 1.26220 1.74204 1.21561 0.78399 0.95208 1.50922 0.88362 1.25447 1.01042 0.94098 0.96028 1.70031 1.36916 0.97871 1.42455 0.85697 0.79587 0.78230 0.79550 1.19141 1.20026 1.19134 0.93585 0.93510 0.89053 0.85991 0.85185 0.74793 0.84901 0.84547 0.84613 0.86810 0.84696 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.30 -6.50 10.28 -34.20 -0.35 -6.85 16 3 C 0.04 0.94 6.70 -39.13 -0.26 0.68 16 4 C -0.13 -2.29 8.78 -38.94 -0.34 -2.64 16 5 C -0.19 -3.42 5.47 -105.08 -0.57 -3.99 16 6 C 0.09 1.31 9.85 -36.85 -0.36 0.95 16 7 C -0.23 -3.26 6.01 -102.81 -0.62 -3.88 16 8 C 0.55 8.54 7.62 -12.77 -0.10 8.44 16 9 O -0.48 -9.22 13.87 5.13 0.07 -9.14 16 10 N -0.66 -7.72 5.92 -10.80 -0.06 -7.78 16 11 C 0.15 1.58 7.17 -83.58 -0.60 0.98 16 12 C -0.13 -1.06 10.06 -39.36 -0.40 -1.46 16 13 C -0.09 -0.70 9.80 -39.53 -0.39 -1.08 16 14 C -0.06 -0.53 6.32 -39.49 -0.25 -0.78 16 15 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 16 C -0.07 -0.68 9.87 -39.30 -0.39 -1.06 16 17 C -0.07 -0.81 6.29 -104.85 -0.66 -1.47 16 18 C 0.00 0.02 6.99 -39.07 -0.27 -0.26 16 19 C -0.23 -5.16 9.14 -39.50 -0.36 -5.53 16 20 C 0.16 3.87 6.67 -38.71 -0.26 3.62 16 21 O -0.14 -4.05 9.52 -13.73 -0.13 -4.18 16 22 C -0.39 -10.57 9.48 30.92 0.29 -10.28 16 23 H 0.10 2.48 5.18 -52.49 -0.27 2.20 16 24 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 25 N -0.84 -24.01 13.67 55.48 0.76 -23.25 16 26 Si 0.95 19.88 29.55 -169.99 -5.02 14.85 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 29 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 30 H 0.05 0.59 7.67 -51.93 -0.40 0.20 16 31 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.12 1.74 6.28 -52.48 -0.33 1.41 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.41 3.79 8.96 -40.82 -0.37 3.42 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.11 2.12 6.03 -52.49 -0.32 1.81 16 40 H 0.14 2.99 5.61 -52.49 -0.29 2.69 16 41 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -32.78 370.67 -8.92 -41.70 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.62 Total: 6.51 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -4.64 Total: -15.32 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.69 Total: -31.03 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.41 Total: -20.17 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.78 -8.92 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033361034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.099 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds