Wall clock time and date at job start Tue Mar 31 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35952 * 116.99537 * 2 1 4 4 C 1.38073 * 120.00317 * 359.97438 * 3 2 1 5 5 C 1.39986 * 119.83851 * 179.97438 * 4 3 2 6 6 C 1.46963 * 120.07737 * 180.02562 * 5 4 3 7 7 C 1.35027 * 119.99883 * 136.66623 * 6 5 4 8 8 C 1.46249 * 120.00098 * 348.68893 * 7 6 5 9 9 O 1.21722 * 119.99963 * 353.21653 * 8 7 6 10 10 N 1.34777 * 120.00242 * 173.21577 * 8 7 6 11 11 C 1.46496 * 120.00256 * 179.72426 * 10 8 7 12 12 C 1.50701 * 109.47366 * 180.27144 * 11 10 8 13 13 C 1.38244 * 119.97662 * 269.72807 * 12 11 10 14 14 C 1.38193 * 120.02474 * 179.72296 * 13 12 11 15 15 C 1.38468 * 119.97340 * 0.57012 * 14 13 12 16 16 F 1.35098 * 120.02475 * 179.67869 * 15 14 13 17 17 C 1.38453 * 119.94875 * 359.70417 * 15 14 13 18 18 C 1.38203 * 119.97325 * 0.02562 * 17 15 14 19 19 C 1.40030 * 119.84113 * 0.27512 * 5 4 3 20 20 C 1.37644 * 119.99842 * 359.44461 * 19 5 4 21 21 C 1.39059 * 120.16309 * 0.55532 * 20 19 5 22 22 O 1.35615 * 119.92189 * 179.73952 * 21 20 19 23 23 C 1.34761 * 116.99837 * 354.30430 * 22 21 20 24 24 H 1.07997 * 120.00408 * 5.05785 * 23 22 21 25 25 C 1.38712 * 119.99958 * 185.06463 * 23 22 21 26 26 N 1.31516 * 120.00153 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99780 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47205 * 90.00452 * 27 25 23 29 29 H 1.48501 * 109.46862 * 210.00295 * 27 25 23 30 30 H 1.48504 * 109.47065 * 329.99789 * 27 25 23 31 31 H 1.08996 * 109.47555 * 299.99847 * 1 2 3 32 32 H 1.08996 * 109.47463 * 60.00565 * 1 2 3 33 33 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.08474 * 359.95565 * 4 3 2 35 35 H 1.08000 * 120.00135 * 316.66579 * 6 5 4 36 36 H 1.07998 * 119.99830 * 168.69286 * 7 6 5 37 37 H 0.97001 * 119.99740 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.47324 * 300.27612 * 11 10 8 39 39 H 1.09004 * 109.47022 * 60.27647 * 11 10 8 40 40 H 1.08000 * 119.98227 * 359.97438 * 13 12 11 41 41 H 1.08003 * 120.01725 * 180.25574 * 14 13 12 42 42 H 1.07996 * 120.01596 * 179.97438 * 17 15 14 43 43 H 1.08005 * 119.98420 * 180.02562 * 18 17 15 44 44 H 1.07998 * 119.99416 * 179.70529 * 19 5 4 45 45 H 1.07998 * 119.91947 * 180.27520 * 20 19 5 46 46 H 0.97003 * 120.00210 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2941 2.3693 -0.0005 5 6 1.9331 3.6148 0.0000 6 6 1.1378 4.8507 0.0000 7 6 1.4874 5.8785 0.8029 8 6 2.4950 5.6827 1.8446 9 8 2.9284 4.5678 2.0703 10 7 2.9438 6.7366 2.5548 11 6 3.9487 6.5396 3.6024 12 6 4.2720 7.8643 4.2439 13 6 5.2951 8.6450 3.7389 14 6 5.5887 9.8626 4.3229 15 6 4.8654 10.2952 5.4216 16 9 5.1558 11.4823 5.9973 17 6 3.8448 9.5099 5.9300 18 6 3.5493 8.2951 5.3408 19 6 3.3319 3.6804 -0.0047 20 6 4.0751 2.5218 0.0016 21 6 3.4404 1.2845 0.0011 22 8 4.1775 0.1462 0.0021 23 6 5.5131 0.2820 -0.1157 24 1 5.9572 1.2664 -0.1230 25 6 6.3174 -0.8425 -0.2276 26 7 7.6208 -0.7100 -0.3430 27 14 5.5493 -2.5452 -0.2144 28 1 5.2176 -2.9495 -1.6042 29 1 6.5095 -3.5169 0.3680 30 1 4.3102 -2.5230 0.6038 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 0.2155 2.3144 -0.0017 35 1 0.2737 4.9368 -0.6421 36 1 1.0229 6.8452 0.6758 37 1 2.5988 7.6251 2.3746 38 1 3.5583 5.8563 4.3565 39 1 4.8532 6.1181 3.1636 40 1 5.8624 8.3050 2.8851 41 1 6.3852 10.4743 3.9257 42 1 3.2802 9.8460 6.7871 43 1 2.7529 7.6826 5.7370 44 1 3.8274 4.6399 -0.0091 45 1 5.1538 2.5739 0.0025 46 1 8.1833 -1.4964 -0.4209 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033467003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:19 Heat of formation + Delta-G solvation = -56.084951 kcal Electronic energy + Delta-G solvation = -31855.696768 eV Core-core repulsion = 27206.379531 eV Total energy + Delta-G solvation = -4649.317238 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.28419 -40.12866 -39.64281 -39.01809 -37.63591 -36.38808 -34.76294 -32.99634 -32.27916 -31.57875 -31.31437 -29.54836 -28.74555 -26.80023 -26.18991 -25.13954 -23.48688 -23.17348 -21.80171 -21.51808 -21.02061 -19.43349 -18.12852 -17.99351 -17.78372 -16.82766 -16.78549 -16.45151 -16.04259 -15.95327 -15.43190 -15.20729 -15.19409 -14.96332 -14.42637 -14.37195 -14.00438 -13.94719 -13.79725 -13.66517 -13.60043 -13.51747 -13.15035 -12.79293 -12.60260 -12.43709 -12.22222 -12.12587 -11.92577 -11.53356 -11.48453 -11.42000 -11.05135 -10.81595 -10.70255 -10.49433 -10.16793 -9.62743 -9.55287 -9.40496 -9.19981 -9.03769 -9.00104 -8.71523 -7.80319 -6.77272 -6.39790 -4.00057 0.61929 0.79522 1.11572 2.24602 2.56927 2.97932 3.27792 3.31731 3.50972 3.53490 3.56628 3.83556 3.97047 4.28432 4.29503 4.30281 4.47751 4.56092 4.81258 4.82946 4.83876 5.00668 5.08529 5.13582 5.30618 5.42821 5.43912 5.51071 5.51170 5.53128 5.60809 5.68506 5.68545 5.77401 5.78494 5.80879 6.11184 6.11639 6.22745 6.37342 6.40467 6.44440 6.48119 6.61691 6.96494 7.09977 7.36179 7.56885 7.59661 7.70580 7.98851 8.20160 8.46584 8.95577 9.60713 10.67128 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.002024 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.662948 B =13831.668648 C =15695.249820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.038 3.962 4 C -0.136 4.136 5 C -0.149 4.149 6 C 0.022 3.978 7 C -0.257 4.257 8 C 0.538 3.462 9 O -0.509 6.509 10 N -0.733 5.733 11 C 0.162 3.838 12 C -0.114 4.114 13 C -0.070 4.070 14 C -0.155 4.155 15 C 0.101 3.899 16 F -0.140 7.140 17 C -0.156 4.156 18 C -0.072 4.072 19 C -0.010 4.010 20 C -0.208 4.208 21 C 0.158 3.842 22 O -0.199 6.199 23 C -0.384 4.384 24 H 0.108 0.892 25 C 0.064 3.936 26 N -0.876 5.876 27 Si 0.904 3.096 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.255 1.255 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.396 0.604 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.102 0.898 45 H 0.137 0.863 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 20.534 6.923 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C -0.006 4.006 4 C -0.155 4.155 5 C -0.150 4.150 6 C 0.002 3.998 7 C -0.278 4.278 8 C 0.327 3.673 9 O -0.385 6.385 10 N -0.386 5.386 11 C 0.039 3.961 12 C -0.114 4.114 13 C -0.089 4.089 14 C -0.174 4.174 15 C 0.082 3.918 16 F -0.119 7.119 17 C -0.175 4.175 18 C -0.091 4.091 19 C -0.028 4.028 20 C -0.228 4.228 21 C 0.105 3.895 22 O -0.103 6.103 23 C -0.460 4.460 24 H 0.125 0.875 25 C -0.139 4.139 26 N -0.513 5.513 27 Si 0.729 3.271 28 H -0.198 1.198 29 H -0.209 1.209 30 H -0.179 1.179 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.230 0.770 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.120 0.880 45 H 0.155 0.845 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.463 19.177 7.121 23.449 hybrid contribution -0.413 0.416 0.185 0.615 sum -11.876 19.594 7.305 24.048 Atomic orbital electron populations 1.22863 0.80411 1.02772 1.00327 1.86162 1.19431 1.26677 1.90259 1.17922 0.89222 0.84380 1.09097 1.20681 0.98069 0.90897 1.05851 1.18097 0.92925 0.91294 1.12725 1.22300 0.94145 0.91371 0.91994 1.22628 1.04533 1.00175 1.00492 1.18510 0.81982 0.84341 0.82447 1.91022 1.57175 1.22937 1.67318 1.46030 1.43791 1.10726 1.38059 1.20116 0.93067 0.92603 0.90365 1.20039 0.97224 0.97061 0.97090 1.21051 0.96128 0.92684 0.99026 1.21193 1.01568 0.98169 0.96475 1.17800 0.97185 0.82498 0.94320 1.91509 1.92751 1.43946 1.83688 1.21167 0.98527 0.95607 1.02220 1.21013 0.98582 0.94910 0.94550 1.20546 0.91890 0.96715 0.93665 1.20848 1.00826 0.90629 1.10452 1.18555 0.87658 0.86928 0.96367 1.83581 1.20219 1.27484 1.79036 1.20851 0.77400 0.96979 1.50723 0.87486 1.24471 0.94525 0.99468 0.95486 1.69632 1.03102 1.31612 1.46988 0.86187 0.79805 0.81715 0.79393 1.19843 1.20867 1.17871 0.93590 0.93541 0.89243 0.86363 0.85893 0.85951 0.76989 0.90486 0.90224 0.84497 0.84499 0.84588 0.84686 0.87961 0.84504 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.31 -6.53 10.28 -34.20 -0.35 -6.88 16 3 C 0.04 0.83 6.70 -39.13 -0.26 0.57 16 4 C -0.14 -2.46 8.77 -38.99 -0.34 -2.80 16 5 C -0.15 -2.61 4.54 -105.04 -0.48 -3.08 16 6 C 0.02 0.28 9.80 -37.19 -0.36 -0.09 16 7 C -0.26 -2.94 9.90 -37.51 -0.37 -3.31 16 8 C 0.54 7.29 6.77 -13.04 -0.09 7.20 16 9 O -0.51 -9.36 12.18 5.17 0.06 -9.29 16 10 N -0.73 -7.25 5.54 -62.94 -0.35 -7.60 16 11 C 0.16 1.59 5.80 -5.20 -0.03 1.56 16 12 C -0.11 -0.90 5.25 -104.62 -0.55 -1.45 16 13 C -0.07 -0.53 9.70 -39.60 -0.38 -0.91 16 14 C -0.16 -1.16 10.03 -39.51 -0.40 -1.56 16 15 C 0.10 0.84 7.30 -39.42 -0.29 0.55 16 16 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 17 C -0.16 -1.13 10.03 -39.52 -0.40 -1.53 16 18 C -0.07 -0.51 9.70 -39.59 -0.38 -0.90 16 19 C -0.01 -0.19 6.59 -39.13 -0.26 -0.44 16 20 C -0.21 -4.76 9.14 -39.49 -0.36 -5.13 16 21 C 0.16 3.93 6.67 -38.76 -0.26 3.67 16 22 O -0.20 -5.58 8.35 -13.96 -0.12 -5.69 16 23 C -0.38 -11.15 9.94 30.91 0.31 -10.85 16 24 H 0.11 3.15 5.42 -52.49 -0.28 2.86 16 25 C 0.06 1.85 5.49 -17.51 -0.10 1.75 16 26 N -0.88 -25.63 13.96 55.48 0.77 -24.86 16 27 Si 0.90 22.50 28.62 -169.99 -4.86 17.64 16 28 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.25 -6.51 7.11 56.52 0.40 -6.11 16 31 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 32 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.12 1.74 6.28 -52.49 -0.33 1.41 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.40 2.87 8.44 -40.82 -0.34 2.52 16 38 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 42 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.10 1.83 7.02 -52.49 -0.37 1.46 16 45 H 0.14 3.26 5.62 -52.49 -0.29 2.96 16 46 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -34.56 398.50 -8.16 -42.72 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.35 Total: 4.50 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -4.01 Total: -15.28 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.43 Total: -32.46 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.41 Total: -21.87 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.86 Total: 17.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.56 -8.16 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033467003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.369 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds