Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31488 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47076 * 270.00156 * 3 2 1 5 5 H 1.48507 * 109.47314 * 30.00132 * 3 2 1 6 6 H 1.48498 * 109.47196 * 149.99797 * 3 2 1 7 7 C 1.38758 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 0.02562 * 7 2 1 9 9 O 1.34776 * 120.00060 * 180.02562 * 7 2 1 10 10 C 1.35555 * 116.99813 * 185.12093 * 9 7 2 11 11 C 1.39167 * 119.92515 * 353.68269 * 10 9 7 12 12 C 1.37631 * 120.07655 * 180.02562 * 11 10 9 13 13 C 1.39812 * 119.92145 * 0.02562 * 12 11 10 14 14 C 1.47657 * 120.07587 * 179.97438 * 13 12 11 15 15 O 1.21780 * 119.99954 * 0.02562 * 14 13 12 16 16 C 1.46233 * 120.00135 * 179.97438 * 14 13 12 17 17 C 1.35080 * 119.99864 * 186.43589 * 16 14 13 18 18 C 1.47068 * 120.00471 * 14.28089 * 17 16 14 19 19 C 1.39928 * 120.16144 * 38.70088 * 18 17 16 20 20 C 1.37827 * 119.83154 * 179.97438 * 19 18 17 21 21 C 1.38527 * 120.16593 * 0.27405 * 20 19 18 22 22 Br 1.89101 * 119.83384 * 179.70002 * 21 20 19 23 23 C 1.38534 * 120.33528 * 359.44906 * 21 20 19 24 24 C 1.37836 * 120.16232 * 0.55040 * 23 21 20 25 25 C 1.39817 * 119.84856 * 0.24715 * 13 12 11 26 26 C 1.37634 * 119.91885 * 359.49614 * 25 13 12 27 27 H 0.96998 * 119.99577 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.95969 * 0.02562 * 11 10 9 29 29 H 1.08006 * 120.03721 * 179.97438 * 12 11 10 30 30 H 1.08002 * 119.99711 * 6.43101 * 16 14 13 31 31 H 1.08002 * 119.99641 * 194.29026 * 17 16 14 32 32 H 1.08005 * 120.08342 * 359.95271 * 19 18 17 33 33 H 1.08006 * 119.91796 * 180.02562 * 20 19 18 34 34 H 1.08003 * 119.92376 * 180.25894 * 23 21 20 35 35 H 1.07994 * 120.08071 * 179.75110 * 24 23 21 36 36 H 1.07998 * 120.03772 * 179.74309 * 25 13 12 37 37 H 1.07992 * 119.96087 * 180.23049 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 2.4964 2.0463 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5464 1.4401 0.7001 7 6 2.0086 -1.2017 0.0005 8 1 1.4686 -2.1370 0.0005 9 8 3.3564 -1.2018 0.0011 10 6 3.9717 -2.4048 -0.1062 11 6 3.2187 -3.5748 -0.0779 12 6 3.8403 -4.7980 -0.1860 13 6 5.2300 -4.8642 -0.3240 14 6 5.9005 -6.1747 -0.4397 15 8 5.2428 -7.1994 -0.4156 16 6 7.3541 -6.2421 -0.5845 17 6 7.9550 -7.4286 -0.8206 18 6 7.1539 -8.5878 -1.2418 19 6 6.0883 -8.4196 -2.1330 20 6 5.3424 -9.5107 -2.5237 21 6 5.6417 -10.7707 -2.0319 22 35 4.6067 -12.2599 -2.5675 23 6 6.6986 -10.9460 -1.1536 24 6 7.4537 -9.8644 -0.7539 25 6 5.9840 -3.6870 -0.3464 26 6 5.3553 -2.4670 -0.2430 27 1 -0.4849 0.8401 0.0004 28 1 2.1453 -3.5228 0.0291 29 1 3.2553 -5.7056 -0.1635 30 1 7.9471 -5.3432 -0.5028 31 1 9.0238 -7.5261 -0.6998 32 1 5.8508 -7.4371 -2.5136 33 1 4.5199 -9.3825 -3.2118 34 1 6.9287 -11.9320 -0.7776 35 1 8.2748 -10.0020 -0.0661 36 1 7.0581 -3.7348 -0.4486 37 1 5.9367 -1.5572 -0.2640 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033469989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = 21.145557 kcal Electronic energy + Delta-G solvation = -23214.051242 eV Core-core repulsion = 19548.439903 eV Total energy + Delta-G solvation = -3665.611339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 372.015 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18039 -39.32959 -38.40638 -36.43650 -34.19225 -32.66673 -31.73087 -31.21016 -30.48783 -30.02791 -28.49834 -25.76731 -24.45095 -22.95604 -22.35755 -22.08297 -20.76586 -18.95153 -18.01871 -17.76549 -16.91687 -16.31032 -15.57025 -15.37998 -15.02662 -14.61340 -14.31067 -14.16954 -14.03135 -13.85281 -13.58166 -13.39434 -13.29193 -13.01504 -12.73036 -12.47241 -12.34672 -11.87669 -11.55493 -11.45089 -11.38350 -11.10239 -10.91831 -10.84072 -10.44728 -10.31902 -9.84741 -9.66298 -9.50462 -9.10185 -8.99475 -8.50544 -8.16789 -7.60191 -6.65325 -4.29611 0.26050 1.16631 1.35333 1.47495 1.90373 2.01635 3.07579 3.12214 3.24891 3.32254 3.58153 4.04554 4.32841 4.40226 4.49363 4.58426 4.63015 4.73787 4.89666 5.06927 5.14100 5.29723 5.38598 5.46821 5.51143 5.57161 5.76636 5.87351 5.92317 5.95950 6.06828 6.14530 6.22571 6.29319 6.43469 6.59213 6.66176 6.79636 6.94501 7.10185 7.36393 7.58584 7.78733 7.93308 8.67321 9.26557 10.40631 Molecular weight = 372.01amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.001846 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.458501 B =15161.762271 C =16508.559172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.112 0.888 9 O -0.198 6.198 10 C 0.182 3.818 11 C -0.237 4.237 12 C -0.009 4.009 13 C -0.262 4.262 14 C 0.418 3.582 15 O -0.468 6.468 16 C -0.209 4.209 17 C -0.047 4.047 18 C -0.053 4.053 19 C -0.037 4.037 20 C -0.102 4.102 21 C -0.079 4.079 22 Br -0.061 7.061 23 C -0.105 4.105 24 C -0.098 4.098 25 C -0.029 4.029 26 C -0.206 4.206 27 H 0.284 0.716 28 H 0.138 0.862 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.851 -19.682 -4.236 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.129 0.871 9 O -0.100 6.100 10 C 0.127 3.873 11 C -0.256 4.256 12 C -0.028 4.028 13 C -0.264 4.264 14 C 0.303 3.697 15 O -0.349 6.349 16 C -0.228 4.228 17 C -0.065 4.065 18 C -0.053 4.053 19 C -0.056 4.056 20 C -0.122 4.122 21 C -0.159 4.159 22 Br 0.024 6.976 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.048 4.048 26 C -0.225 4.225 27 H 0.095 0.905 28 H 0.156 0.844 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.952 -20.357 -4.397 25.638 hybrid contribution 0.289 1.238 0.267 1.299 sum 15.241 -19.119 -4.130 24.797 Atomic orbital electron populations 1.69607 1.05757 1.29118 1.45358 1.24566 0.95093 0.99164 0.95080 0.86150 0.80388 0.81004 0.79256 1.19555 1.20439 1.18153 1.20916 0.76546 0.97014 1.52266 0.87086 1.83493 1.23081 1.26304 1.77150 1.19405 0.91810 0.85303 0.90787 1.21240 1.01463 0.91584 1.11353 1.20964 0.93138 0.97160 0.91538 1.19788 0.94413 0.93435 1.18784 1.20312 0.88194 0.88427 0.72757 1.90677 1.67948 1.36596 1.39684 1.23742 0.96820 0.98248 1.03957 1.22483 0.99202 0.91394 0.93460 1.19077 0.95935 0.93111 0.97214 1.21212 0.91933 0.97983 0.94467 1.20931 1.00164 0.90705 1.00374 1.21840 0.98652 0.92589 1.02784 1.96689 1.70386 1.39827 1.90650 1.20889 0.94707 0.99531 0.97349 1.21193 0.99751 0.91247 0.99452 1.20852 0.98463 0.90999 0.94489 1.20161 0.91865 0.98068 1.12413 0.90538 0.84445 0.86124 0.84378 0.84704 0.85619 0.85161 0.85264 0.85227 0.86049 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.63 13.96 55.48 0.77 -22.85 16 2 C 0.07 1.77 5.50 -17.51 -0.10 1.67 16 3 Si 0.91 20.27 28.62 -169.99 -4.86 15.41 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -10.42 9.94 30.92 0.31 -10.11 16 8 H 0.11 3.02 5.42 -52.49 -0.28 2.73 16 9 O -0.20 -4.87 8.57 0.80 0.01 -4.86 16 10 C 0.18 3.91 6.66 -38.89 -0.26 3.66 16 11 C -0.24 -4.90 9.14 -39.46 -0.36 -5.26 16 12 C -0.01 -0.17 9.58 -39.21 -0.38 -0.55 16 13 C -0.26 -4.30 5.88 -104.87 -0.62 -4.91 16 14 C 0.42 6.12 5.95 -32.53 -0.19 5.93 16 15 O -0.47 -7.79 12.16 5.12 0.06 -7.73 16 16 C -0.21 -2.26 9.33 -37.50 -0.35 -2.61 16 17 C -0.05 -0.45 9.83 -37.13 -0.36 -0.81 16 18 C -0.05 -0.60 4.66 -105.06 -0.49 -1.09 16 19 C -0.04 -0.46 6.60 -39.10 -0.26 -0.72 16 20 C -0.10 -1.24 9.76 -39.63 -0.39 -1.62 16 21 C -0.08 -0.91 6.23 -39.37 -0.25 -1.16 16 22 Br -0.06 -0.63 33.69 -68.01 -2.29 -2.92 16 23 C -0.10 -1.08 9.76 -39.62 -0.39 -1.47 16 24 C -0.10 -0.97 9.80 -39.10 -0.38 -1.36 16 25 C -0.03 -0.45 9.44 -39.21 -0.37 -0.82 16 26 C -0.21 -3.67 9.97 -39.46 -0.39 -4.06 16 27 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.14 2.97 5.63 -52.49 -0.30 2.68 16 29 H 0.12 2.12 7.64 -52.48 -0.40 1.72 16 30 H 0.14 1.14 6.34 -52.49 -0.33 0.81 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.61 6.70 -52.48 -0.35 1.26 16 33 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.35 6.23 -52.49 -0.33 1.02 16 37 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -28.77 342.93 -9.61 -38.38 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.24 Total: 4.70 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -5.22 Total: -25.28 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.77 Total: -22.85 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.86 Total: 15.41 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.77 -9.61 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033469989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.523 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds