Wall clock time and date at job start Tue Mar 31 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35955 * 116.99753 * 2 1 4 4 C 1.38080 * 119.99878 * 0.25657 * 3 2 1 5 5 C 1.39981 * 119.83544 * 180.26913 * 4 3 2 6 6 C 1.46959 * 120.07715 * 179.74135 * 5 4 3 7 7 C 1.35028 * 120.00493 * 316.36910 * 6 5 4 8 8 C 1.46258 * 119.99378 * 348.68338 * 7 6 5 9 9 O 1.21723 * 120.00276 * 353.21050 * 8 7 6 10 10 N 1.34779 * 119.99440 * 173.20961 * 8 7 6 11 11 C 1.46500 * 119.99549 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47100 * 180.02562 * 11 10 8 13 13 C 1.38215 * 120.01633 * 104.99929 * 12 11 10 14 14 C 1.38221 * 120.02731 * 180.27852 * 13 12 11 15 15 C 1.38271 * 120.04884 * 359.49236 * 14 13 12 16 16 C 1.38175 * 120.02617 * 0.50385 * 15 14 13 17 17 C 1.38445 * 120.00844 * 285.02506 * 12 11 10 18 18 F 1.35095 * 120.02632 * 359.95126 * 17 12 11 19 19 C 1.40027 * 119.84186 * 359.47598 * 5 4 3 20 20 C 1.37649 * 120.00497 * 0.26902 * 19 5 4 21 21 C 1.39064 * 120.15793 * 359.97438 * 20 19 5 22 22 O 1.35610 * 119.91899 * 180.02562 * 21 20 19 23 23 C 1.34757 * 117.00243 * 354.30139 * 22 21 20 24 24 H 1.07994 * 120.00009 * 5.06303 * 23 22 21 25 25 C 1.38705 * 120.00063 * 185.06169 * 23 22 21 26 26 N 1.31519 * 120.00198 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00042 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47361 * 90.00082 * 27 25 23 29 29 H 1.48502 * 109.47039 * 210.00030 * 27 25 23 30 30 H 1.48494 * 109.47095 * 329.99843 * 27 25 23 31 31 H 1.08999 * 109.46981 * 60.00793 * 1 2 3 32 32 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47065 * 299.99539 * 1 2 3 34 34 H 1.07988 * 120.08373 * 0.02562 * 4 3 2 35 35 H 1.08005 * 120.00099 * 136.37792 * 6 5 4 36 36 H 1.07997 * 120.00145 * 168.67485 * 7 6 5 37 37 H 0.96993 * 120.00571 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47515 * 60.00345 * 11 10 8 39 39 H 1.09000 * 109.47621 * 300.00233 * 11 10 8 40 40 H 1.08003 * 119.98624 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.97546 * 179.72645 * 14 13 12 42 42 H 1.08002 * 119.98690 * 180.26007 * 15 14 13 43 43 H 1.07996 * 120.01275 * 179.76442 * 16 15 14 44 44 H 1.08002 * 120.00256 * 180.24871 * 19 5 4 45 45 H 1.07997 * 119.92720 * 180.02562 * 20 19 5 46 46 H 0.96996 * 120.00370 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 0.0054 5 6 1.9330 3.6148 -0.0004 6 6 1.1378 4.8506 -0.0005 7 6 0.0575 4.9584 -0.8034 8 6 -0.1816 3.9601 -1.8452 9 8 0.6536 3.1039 -2.0710 10 7 -1.3268 3.9883 -2.5553 11 6 -1.5661 2.9888 -3.5993 12 6 -2.9079 3.2404 -4.2376 13 6 -2.9795 3.8065 -5.4964 14 6 -4.2102 4.0426 -6.0796 15 6 -5.3707 3.7032 -5.4090 16 6 -5.3017 3.1370 -4.1505 17 6 -4.0693 2.9049 -3.5629 18 9 -4.0005 2.3510 -2.3327 19 6 3.3318 3.6804 -0.0004 20 6 4.0752 2.5219 -0.0004 21 6 3.4405 1.2845 0.0002 22 8 4.1776 0.1462 0.0007 23 6 5.5130 0.2821 -0.1186 24 1 5.9571 1.2664 -0.1267 25 6 6.3172 -0.8425 -0.2309 26 7 5.7765 -2.0413 -0.2205 27 14 8.1684 -0.6542 -0.3955 28 1 8.7877 -0.6516 0.9541 29 1 8.7125 -1.7864 -1.1876 30 1 8.4766 0.6248 -1.0841 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 0.2156 2.3144 0.0100 35 1 1.4174 5.6729 0.6416 36 1 -0.6300 5.7815 -0.6761 37 1 -1.9922 4.6708 -2.3757 38 1 -1.5545 1.9922 -3.1578 39 1 -0.7850 3.0599 -4.3563 40 1 -2.0735 4.0683 -6.0229 41 1 -4.2653 4.4892 -7.0615 42 1 -6.3317 3.8843 -5.8674 43 1 -6.2083 2.8754 -3.6253 44 1 3.8275 4.6399 -0.0007 45 1 5.1539 2.5739 0.0000 46 1 6.3388 -2.8277 -0.2995 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033504513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:22 Heat of formation + Delta-G solvation = -55.815771 kcal Electronic energy + Delta-G solvation = -32743.649271 eV Core-core repulsion = 28094.343706 eV Total energy + Delta-G solvation = -4649.305565 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 371.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.21511 -40.02495 -39.49857 -38.89004 -37.38397 -36.25651 -34.89081 -32.92622 -32.14459 -31.73206 -30.89106 -29.32873 -28.46833 -26.85146 -26.22029 -25.31512 -23.23378 -23.08416 -21.82895 -21.39718 -20.97968 -19.45285 -18.01800 -17.96871 -17.62389 -16.83246 -16.66512 -16.35925 -16.07621 -15.77845 -15.43229 -15.12703 -14.97457 -14.77797 -14.57747 -14.45605 -14.08259 -13.78825 -13.63074 -13.42242 -13.36097 -13.28025 -13.18938 -12.72653 -12.69900 -12.58632 -12.09668 -11.99257 -11.65195 -11.51750 -11.40074 -11.22372 -10.96517 -10.90824 -10.56052 -10.43111 -10.26247 -9.68547 -9.43186 -9.35603 -9.17857 -9.10434 -8.96313 -8.65256 -7.44105 -6.69465 -6.39480 -3.92348 0.63540 0.74515 1.21460 2.43813 2.66295 3.01234 3.16860 3.18318 3.22793 3.52084 3.63003 3.84672 4.00669 4.17483 4.20277 4.30774 4.50950 4.67241 4.76208 4.86692 5.06444 5.12025 5.20721 5.25507 5.30327 5.35308 5.52988 5.59048 5.63746 5.66943 5.70844 5.73857 5.82615 5.85520 5.89735 5.94760 5.99212 6.28865 6.34397 6.40939 6.45500 6.50937 6.60580 6.76514 7.08056 7.23914 7.32340 7.45220 7.63669 7.75659 8.02358 8.35238 8.52372 9.04583 9.78160 10.77640 Molecular weight = 371.14amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.002110 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.129508 B =13266.533471 C =13738.802062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.045 3.955 4 C -0.079 4.079 5 C -0.158 4.158 6 C 0.027 3.973 7 C -0.264 4.264 8 C 0.537 3.463 9 O -0.508 6.508 10 N -0.733 5.733 11 C 0.164 3.836 12 C -0.138 4.138 13 C -0.073 4.073 14 C -0.133 4.133 15 C -0.087 4.087 16 C -0.158 4.158 17 C 0.114 3.886 18 F -0.132 7.132 19 C -0.065 4.065 20 C -0.231 4.231 21 C 0.153 3.847 22 O -0.158 6.158 23 C -0.389 4.389 24 H 0.094 0.906 25 C 0.039 3.961 26 N -0.854 5.854 27 Si 0.942 3.058 28 H -0.273 1.273 29 H -0.277 1.277 30 H -0.267 1.267 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.395 0.605 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.108 0.892 45 H 0.133 0.867 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.538 15.378 -7.943 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.219 6.219 3 C 0.000 4.000 4 C -0.098 4.098 5 C -0.159 4.159 6 C 0.007 3.993 7 C -0.286 4.286 8 C 0.327 3.673 9 O -0.383 6.383 10 N -0.386 5.386 11 C 0.041 3.959 12 C -0.139 4.139 13 C -0.091 4.091 14 C -0.151 4.151 15 C -0.105 4.105 16 C -0.176 4.176 17 C 0.095 3.905 18 F -0.110 7.110 19 C -0.083 4.083 20 C -0.250 4.250 21 C 0.097 3.903 22 O -0.060 6.060 23 C -0.465 4.465 24 H 0.111 0.889 25 C -0.166 4.166 26 N -0.487 5.487 27 Si 0.766 3.234 28 H -0.199 1.199 29 H -0.203 1.203 30 H -0.191 1.191 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.229 0.771 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.126 0.874 45 H 0.150 0.850 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.779 13.994 -8.062 26.317 hybrid contribution 0.115 0.603 0.050 0.616 sum -20.663 14.598 -8.012 26.538 Atomic orbital electron populations 1.22813 0.80694 1.02492 1.00066 1.86203 1.19122 1.26509 1.90019 1.17968 0.89281 0.84455 1.08298 1.20513 0.97539 0.90641 1.01138 1.18041 0.92733 0.91429 1.13683 1.22324 0.90622 0.94666 0.91673 1.22581 1.02677 1.02468 1.00824 1.18518 0.81116 0.85161 0.82468 1.91027 1.43486 1.36658 1.67163 1.45989 1.21011 1.33324 1.38299 1.20006 0.91942 0.93320 0.90669 1.20063 0.94209 1.03261 0.96402 1.21069 0.98704 0.95878 0.93477 1.21249 0.92138 1.01010 1.00676 1.21081 0.99093 0.96678 0.93651 1.21196 0.96553 1.02827 0.97059 1.17640 0.94019 0.97530 0.81352 1.91544 1.97177 1.82624 1.39676 1.20677 0.92176 0.97052 0.98430 1.20715 1.00330 0.90880 1.13108 1.18824 0.88236 0.87590 0.95619 1.83992 1.19453 1.25736 1.76825 1.21426 0.78693 0.94794 1.51556 0.88888 1.25337 1.00498 0.94240 0.96571 1.70056 1.36180 0.97636 1.44866 0.85701 0.80555 0.78458 0.78647 1.19855 1.20257 1.19117 0.93666 0.89352 0.94057 0.87238 0.85839 0.86126 0.77135 0.90429 0.90150 0.84652 0.85091 0.84929 0.84587 0.87365 0.84969 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.30 -7.39 10.28 -34.21 -0.35 -7.74 16 3 C 0.04 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.08 -1.63 5.58 -38.99 -0.22 -1.85 16 5 C -0.16 -2.98 4.54 -105.04 -0.48 -3.45 16 6 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 7 C -0.26 -3.39 9.90 -37.50 -0.37 -3.76 16 8 C 0.54 8.04 6.77 -13.04 -0.09 7.95 16 9 O -0.51 -9.99 12.18 5.17 0.06 -9.93 16 10 N -0.73 -8.43 5.54 -62.93 -0.35 -8.78 16 11 C 0.16 1.86 5.49 -5.19 -0.03 1.83 16 12 C -0.14 -1.25 5.25 -104.55 -0.55 -1.80 16 13 C -0.07 -0.52 9.67 -39.60 -0.38 -0.90 16 14 C -0.13 -0.76 10.04 -39.58 -0.40 -1.16 16 15 C -0.09 -0.49 10.04 -39.59 -0.40 -0.89 16 16 C -0.16 -1.12 10.03 -39.51 -0.40 -1.51 16 17 C 0.11 1.06 7.25 -39.42 -0.29 0.77 16 18 F -0.13 -1.46 16.76 2.25 0.04 -1.43 16 19 C -0.06 -1.27 9.78 -39.13 -0.38 -1.66 16 20 C -0.23 -5.35 9.14 -39.49 -0.36 -5.71 16 21 C 0.15 4.05 6.67 -38.76 -0.26 3.79 16 22 O -0.16 -4.83 9.52 -13.92 -0.13 -4.96 16 23 C -0.39 -11.30 9.48 30.90 0.29 -11.01 16 24 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 25 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 26 N -0.85 -25.92 13.67 55.48 0.76 -25.16 16 27 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 29 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 30 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 31 H 0.04 0.79 7.67 -51.93 -0.40 0.39 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 34 H 0.11 2.09 5.25 -52.49 -0.28 1.81 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.40 3.56 8.44 -40.82 -0.34 3.21 16 38 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 40 H 0.14 0.80 8.00 -52.48 -0.42 0.38 16 41 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 42 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 45 H 0.13 2.99 5.62 -52.49 -0.29 2.69 16 46 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -36.53 398.91 -8.35 -44.88 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.33 Total: 6.98 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -4.03 Total: -15.89 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.41 Total: -33.94 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.42 Total: -22.63 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.53 -8.35 -44.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033504513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.939 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds