Wall clock time and date at job start Tue Mar 31 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37674 * 119.74228 * 2 1 4 4 C 1.39790 * 119.76847 * 180.25420 * 3 2 1 5 5 N 1.35670 * 133.38166 * 179.78249 * 4 3 2 6 6 C 1.31079 * 109.64112 * 179.97438 * 5 4 3 7 7 S 1.76195 * 125.09194 * 179.97438 * 6 5 4 8 8 C 1.76201 * 99.99660 * 0.02562 * 7 6 5 9 9 H 1.07996 * 120.00089 * 359.97438 * 8 7 6 10 10 C 1.38745 * 119.99959 * 180.02562 * 8 7 6 11 11 N 1.31581 * 120.00140 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00130 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47514 * 89.99471 * 12 10 8 14 14 H 1.48497 * 109.47407 * 209.99341 * 12 10 8 15 15 H 1.48502 * 109.47233 * 329.99891 * 12 10 8 16 16 N 1.36731 * 109.82356 * 359.97438 * 6 5 4 17 17 C 1.46500 * 126.38777 * 180.02562 * 16 6 5 18 18 C 1.50700 * 109.46954 * 269.99841 * 17 16 6 19 19 C 1.38242 * 119.99215 * 269.72815 * 18 17 16 20 20 C 1.38210 * 120.01523 * 179.72895 * 19 18 17 21 21 C 1.38352 * 119.98763 * 0.54376 * 20 19 18 22 22 Cl 1.73600 * 120.01349 * 179.70390 * 21 20 19 23 23 C 1.38354 * 119.97057 * 359.73231 * 21 20 19 24 24 C 1.38210 * 119.98876 * 359.97438 * 23 21 20 25 25 C 1.38385 * 107.21565 * 0.02562 * 16 6 5 26 26 C 1.38653 * 133.89300 * 180.02562 * 25 16 6 27 27 C 1.37988 * 119.85111 * 179.97438 * 26 25 16 28 28 C 1.50703 * 119.76919 * 179.97438 * 27 26 25 29 29 H 1.09009 * 109.47424 * 270.22010 * 1 2 3 30 30 H 1.08997 * 109.47435 * 30.21979 * 1 2 3 31 31 H 1.09006 * 109.47045 * 150.22341 * 1 2 3 32 32 H 1.08001 * 120.11226 * 0.05119 * 3 2 1 33 33 H 0.96997 * 120.00437 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.47571 * 29.99997 * 17 16 6 35 35 H 1.09003 * 109.47185 * 150.00621 * 17 16 6 36 36 H 1.08006 * 119.98938 * 0.02562 * 19 18 17 37 37 H 1.08006 * 120.00888 * 180.27312 * 20 19 18 38 38 H 1.08003 * 120.00166 * 180.02562 * 23 21 20 39 39 H 1.08001 * 119.99454 * 179.97438 * 24 23 21 40 40 H 1.07999 * 120.07259 * 359.95259 * 26 25 16 41 41 H 1.09002 * 109.47152 * 90.00190 * 28 27 26 42 42 H 1.09001 * 109.46980 * 330.00290 * 28 27 26 43 43 H 1.09004 * 109.47113 * 210.00271 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1954 0.0000 4 6 3.5879 1.1960 -0.0054 5 7 4.5192 2.1825 -0.0105 6 6 5.7194 1.6553 -0.0138 7 16 7.2265 2.5679 -0.0215 8 6 6.5894 4.2107 -0.0221 9 1 5.5222 4.3760 -0.0187 10 6 7.4588 5.2919 -0.0282 11 7 8.7592 5.0906 -0.0329 12 14 6.7835 7.0335 -0.0296 13 1 6.6099 7.4984 1.3701 14 1 7.7322 7.9318 -0.7354 15 1 5.4712 7.0550 -0.7245 16 7 5.6266 0.2912 -0.0103 17 6 6.7443 -0.6559 -0.0117 18 6 7.1228 -0.9840 -1.4330 19 6 6.5265 -2.0514 -2.0782 20 6 6.8692 -2.3493 -3.3835 21 6 7.8175 -1.5860 -4.0409 22 17 8.2541 -1.9643 -5.6780 23 6 8.4182 -0.5214 -3.3928 24 6 8.0702 -0.2207 -2.0894 25 6 4.2800 -0.0278 -0.0051 26 6 3.5749 -1.2216 0.0004 27 6 2.1951 -1.2044 0.0052 28 6 1.4306 -2.5030 0.0107 29 1 -0.3634 0.0039 1.0277 30 1 -0.3634 0.8880 -0.5172 31 1 -0.3633 -0.8920 -0.5104 32 1 1.6476 2.1293 0.0008 33 1 9.3670 5.8465 -0.0368 34 1 7.5985 -0.2108 0.4983 35 1 6.4477 -1.5687 0.5052 36 1 5.7890 -2.6496 -1.5636 37 1 6.3999 -3.1805 -3.8890 38 1 9.1583 0.0751 -3.9056 39 1 8.5394 0.6100 -1.5833 40 1 4.1044 -2.1629 0.0006 41 1 1.2499 -2.8140 1.0397 42 1 2.0114 -3.2687 -0.5036 43 1 0.4775 -2.3657 -0.5001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033643669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:47 Heat of formation + Delta-G solvation = 72.559274 kcal Electronic energy + Delta-G solvation = -27946.440102 eV Core-core repulsion = 24108.364632 eV Total energy + Delta-G solvation = -3838.075470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 372.076 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41309 -39.38852 -37.74871 -36.61530 -34.30235 -32.70440 -31.92381 -31.33745 -31.10754 -30.50349 -27.12051 -26.22183 -25.62944 -25.48767 -22.94145 -22.17935 -21.81298 -20.44627 -20.18013 -18.06560 -17.27247 -16.69468 -16.08188 -15.80181 -15.49411 -15.23991 -14.96356 -14.73115 -14.65530 -13.96706 -13.79080 -13.59112 -13.48292 -13.39786 -13.25025 -13.00921 -12.72690 -12.43622 -12.33584 -11.92273 -11.78182 -11.54540 -11.49896 -11.31833 -11.19419 -11.17461 -11.07663 -10.95669 -10.85568 -10.73436 -10.22346 -9.86414 -9.35024 -9.20833 -9.08598 -8.99662 -8.71277 -8.13371 -7.62174 -6.68970 -6.51730 -4.24737 0.95657 1.24908 1.38211 1.89147 2.02966 2.47344 3.14864 3.20603 3.22930 3.28764 3.31899 3.72236 3.97285 4.29704 4.56123 4.65191 4.75124 4.80167 4.91203 4.94177 4.99737 5.06446 5.20993 5.22062 5.29029 5.42439 5.46655 5.48006 5.58052 5.63123 5.73319 5.77719 5.85803 5.87439 5.91525 5.94780 6.09026 6.12329 6.19649 6.24244 6.38325 6.50790 6.72283 6.89122 6.94927 7.06090 7.35358 7.50854 7.55874 8.36120 8.58227 9.01747 10.56727 Molecular weight = 372.08amu Principal moments of inertia in cm(-1) A = 0.005424 B = 0.004391 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5161.212050 B = 6375.465829 C =10502.018079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C -0.079 4.079 4 C 0.072 3.928 5 N -0.506 5.506 6 C 0.270 3.730 7 S 0.131 5.869 8 C -0.530 4.530 9 H 0.108 0.892 10 C 0.076 3.924 11 N -0.878 5.878 12 Si 0.931 3.069 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.266 1.266 16 N -0.489 5.489 17 C 0.156 3.844 18 C -0.106 4.106 19 C -0.087 4.087 20 C -0.117 4.117 21 C -0.028 4.028 22 Cl -0.076 7.076 23 C -0.109 4.109 24 C -0.075 4.075 25 C 0.042 3.958 26 C -0.105 4.105 27 C -0.095 4.095 28 C -0.106 4.106 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.274 0.726 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -16.900 -3.090 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.101 4.101 4 C -0.050 4.050 5 N -0.231 5.231 6 C -0.099 4.099 7 S 0.367 5.633 8 C -0.678 4.678 9 H 0.125 0.875 10 C -0.133 4.133 11 N -0.513 5.513 12 Si 0.756 3.244 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.190 1.190 16 N -0.183 5.183 17 C 0.034 3.966 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.136 4.136 21 C -0.055 4.055 22 Cl -0.048 7.048 23 C -0.128 4.128 24 C -0.094 4.094 25 C -0.068 4.068 26 C -0.126 4.126 27 C -0.098 4.098 28 C -0.162 4.162 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.037 -16.341 -3.222 17.138 hybrid contribution -1.219 0.624 -0.215 1.386 sum -5.256 -15.718 -3.437 16.926 Atomic orbital electron populations 1.20745 0.91560 1.02284 1.01798 1.19271 0.95367 0.91934 1.03516 1.19990 0.90316 0.97514 1.02245 1.19241 0.93950 0.88911 1.02863 1.71120 0.96505 1.28854 1.26583 1.27099 1.02215 0.82314 0.98259 1.83242 0.93153 1.01411 1.85474 1.23263 0.97811 0.88323 1.58414 0.87455 1.25075 0.94529 1.00254 0.93464 1.69911 1.01729 1.32825 1.46828 0.85940 0.79088 0.80629 0.78705 1.19932 1.20671 1.19047 1.45238 1.03881 1.05509 1.63652 1.20537 0.89380 0.93327 0.93392 1.20192 0.97523 0.96250 0.96824 1.20960 0.98666 0.96950 0.94024 1.20950 0.97556 1.00250 0.94822 1.20983 0.99621 0.98439 0.86435 1.98362 1.92305 1.93980 1.20112 1.21112 1.00516 0.96222 0.94964 1.21354 0.95917 0.98196 0.93915 1.18821 0.83757 0.96644 1.07597 1.19533 0.92843 0.94154 1.06099 1.19186 0.92241 0.94572 1.03830 1.20725 0.99710 0.94049 1.01726 0.91739 0.91990 0.91585 0.86076 0.91610 0.87622 0.88692 0.85367 0.85046 0.84536 0.83686 0.87129 0.91780 0.92268 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.58 36.00 0.34 -0.81 16 2 C -0.10 -1.43 5.87 -104.66 -0.61 -2.05 16 3 C -0.08 -1.41 9.74 -39.21 -0.38 -1.79 16 4 C 0.07 1.51 7.22 -84.70 -0.61 0.90 16 5 N -0.51 -12.22 9.96 -10.87 -0.11 -12.33 16 6 C 0.27 6.06 7.92 -88.33 -0.70 5.36 16 7 S 0.13 3.10 20.37 -107.50 -2.19 0.91 16 8 C -0.53 -14.46 9.35 30.92 0.29 -14.17 16 9 H 0.11 3.06 6.85 -52.49 -0.36 2.70 16 10 C 0.08 2.02 5.49 -17.47 -0.10 1.92 16 11 N -0.88 -23.78 13.22 55.49 0.73 -23.05 16 12 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 16 N -0.49 -9.00 2.82 -115.58 -0.33 -9.32 16 17 C 0.16 2.19 6.07 -5.19 -0.03 2.16 16 18 C -0.11 -1.45 5.46 -104.62 -0.57 -2.02 16 19 C -0.09 -1.04 9.70 -39.59 -0.38 -1.43 16 20 C -0.12 -1.36 9.83 -39.55 -0.39 -1.75 16 21 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 22 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 23 C -0.11 -1.46 9.83 -39.55 -0.39 -1.85 16 24 C -0.07 -1.08 9.70 -39.59 -0.38 -1.46 16 25 C 0.04 0.77 6.87 -83.86 -0.58 0.19 16 26 C -0.10 -1.55 9.68 -39.52 -0.38 -1.93 16 27 C -0.10 -1.30 5.88 -104.54 -0.62 -1.92 16 28 C -0.11 -1.03 9.59 36.01 0.35 -0.68 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.07 0.60 5.91 -51.93 -0.31 0.29 16 32 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.11 1.44 7.63 -51.93 -0.40 1.05 16 35 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.13 1.28 7.87 -52.48 -0.41 0.87 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.15 2.21 7.27 -52.49 -0.38 1.83 16 40 H 0.11 1.33 7.87 -52.49 -0.41 0.92 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.07 0.58 5.90 -51.93 -0.31 0.27 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -30.78 392.61 -12.98 -43.76 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.08 Total: 2.48 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -5.40 Total: -21.93 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.30 Total: -44.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.19 Total: 0.91 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.78 -12.98 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033643669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.316 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds