Wall clock time and date at job start Tue Mar 31 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00039 * 2 1 4 4 H 1.48501 * 109.47069 * 270.00318 * 3 2 1 5 5 H 1.48506 * 109.46946 * 30.00362 * 3 2 1 6 6 H 1.48494 * 109.47188 * 150.00228 * 3 2 1 7 7 C 1.37873 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00682 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00289 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47595 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00157 * 270.00320 * 10 9 7 12 12 O 1.21288 * 120.00121 * 3.80906 * 11 10 9 13 13 C 1.50703 * 120.00276 * 183.81928 * 11 10 9 14 14 O 1.42892 * 109.47324 * 180.86601 * 13 11 10 15 15 C 1.35004 * 117.00295 * 179.97438 * 14 13 11 16 16 O 1.21719 * 119.99682 * 0.02562 * 15 14 13 17 17 C 1.41216 * 120.00414 * 179.97438 * 15 14 13 18 18 C 1.35776 * 119.99878 * 186.19867 * 17 15 14 19 19 C 1.41505 * 120.00706 * 10.07697 * 18 17 15 20 20 C 1.37087 * 125.47960 * 224.42439 * 19 18 17 21 21 C 1.37400 * 113.22146 * 179.79268 * 20 19 18 22 22 C 1.33889 * 115.12896 * 0.49404 * 21 20 19 23 23 S 1.70614 * 111.01856 * 359.72497 * 22 21 20 24 24 C 1.39925 * 120.00117 * 89.99686 * 10 9 7 25 25 C 1.38877 * 120.07242 * 246.50764 * 24 10 9 26 26 C 1.38115 * 119.92762 * 180.23102 * 25 24 10 27 27 C 1.38285 * 120.06810 * 359.47090 * 26 25 24 28 28 C 1.38284 * 120.14294 * 0.55525 * 27 26 25 29 29 C 1.38114 * 120.07175 * 359.69855 * 28 27 26 30 30 H 0.96996 * 120.00268 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46906 * 59.99678 * 9 7 2 32 32 H 1.09004 * 109.46818 * 300.00296 * 9 7 2 33 33 H 1.09009 * 109.46699 * 300.86452 * 13 11 10 34 34 H 1.09002 * 109.47279 * 60.85852 * 13 11 10 35 35 H 1.07998 * 119.99525 * 6.19973 * 17 15 14 36 36 H 1.08008 * 119.99945 * 190.07332 * 18 17 15 37 37 H 1.08004 * 123.39040 * 359.97438 * 20 19 18 38 38 H 1.07993 * 122.43583 * 180.19424 * 21 20 19 39 39 H 1.07995 * 124.49293 * 179.72194 * 22 21 20 40 40 H 1.07998 * 120.03396 * 359.95485 * 25 24 10 41 41 H 1.07992 * 119.96566 * 179.72495 * 26 25 24 42 42 H 1.07998 * 119.92815 * 180.25492 * 27 26 25 43 43 H 1.08002 * 119.96358 * 179.72310 * 28 27 26 44 44 H 1.07991 * 120.03402 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6410 -4.1248 -1.1677 12 8 2.3014 -3.6201 -2.2170 13 6 3.5526 -5.3249 -1.1692 14 8 3.8919 -5.6637 -2.5153 15 6 4.7087 -6.7238 -2.6933 16 8 5.1205 -7.3433 -1.7298 17 6 5.0844 -7.1147 -3.9972 18 6 5.8011 -8.2525 -4.1848 19 6 5.9896 -9.1552 -3.1115 20 6 7.1733 -9.7627 -2.7813 21 6 7.0716 -10.5896 -1.6887 22 6 5.8497 -10.6683 -1.1470 23 16 4.7414 -9.6836 -1.9914 24 6 2.6577 -4.1444 1.2112 25 6 3.9912 -4.0080 1.5743 26 6 4.4379 -4.5382 2.7689 27 6 3.5564 -5.1947 3.6081 28 6 2.2281 -5.3327 3.2492 29 6 1.7763 -4.8093 2.0536 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 4.4608 -5.0919 -0.6132 34 1 3.0450 -6.1674 -0.6993 35 1 4.8016 -6.5085 -4.8451 36 1 6.2274 -8.4687 -5.1533 37 1 8.0940 -9.6048 -3.3234 38 1 7.9147 -11.1400 -1.2983 39 1 5.5988 -11.2747 -0.2893 40 1 4.6792 -3.4917 0.9212 41 1 5.4757 -4.4363 3.0497 42 1 3.9073 -5.6048 4.5435 43 1 1.5432 -5.8499 3.9048 44 1 0.7387 -4.9171 1.7742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033715372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:26 Heat of formation + Delta-G solvation = -12.491778 kcal Electronic energy + Delta-G solvation = -30365.275939 eV Core-core repulsion = 26148.229124 eV Total energy + Delta-G solvation = -4217.046814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81158 -39.83784 -38.33712 -37.96206 -36.56499 -34.87654 -34.12144 -32.74465 -30.78638 -29.83418 -29.40789 -28.65222 -26.73090 -25.19946 -23.44656 -22.81094 -22.43462 -22.03874 -20.34305 -19.84088 -19.19339 -18.14963 -17.52033 -16.88858 -16.70779 -16.45561 -16.03333 -15.95688 -15.47571 -15.01906 -14.91140 -14.53981 -14.27973 -14.18423 -14.00904 -13.34594 -13.25235 -13.17351 -12.98352 -12.91995 -12.74414 -12.47722 -12.29379 -12.19342 -12.11844 -11.50478 -11.24943 -11.11409 -11.02942 -10.86693 -10.68269 -10.62105 -10.54405 -10.20022 -10.04774 -9.78290 -9.39839 -8.72176 -8.64046 -8.58647 -8.46530 -8.00866 -7.74476 -6.08715 -4.13154 -0.02643 1.30822 1.51394 1.61270 1.70163 1.92886 2.52872 2.64490 3.00151 3.12344 3.30532 3.36198 3.39402 3.82037 3.99229 4.42333 4.62455 4.75270 4.87153 4.88406 5.12989 5.14836 5.15211 5.20470 5.26666 5.28428 5.30632 5.32568 5.35245 5.57179 5.64287 5.78350 5.84274 5.89917 5.98424 6.16924 6.22314 6.28957 6.42592 6.57118 6.70030 6.73633 6.90682 7.14981 7.27746 7.38981 7.75200 7.86552 8.13831 8.21036 8.73652 8.91269 9.51338 10.99791 Molecular weight = 371.10amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.002615 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.302169 B =10706.615236 C =12141.752469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.250 3.750 10 N -0.556 5.556 11 C 0.514 3.486 12 O -0.503 6.503 13 C 0.051 3.949 14 O -0.323 6.323 15 C 0.481 3.519 16 O -0.495 6.495 17 C -0.202 4.202 18 C 0.033 3.967 19 C -0.219 4.219 20 C -0.098 4.098 21 C -0.155 4.155 22 C -0.257 4.257 23 S 0.269 5.731 24 C 0.156 3.844 25 C -0.126 4.126 26 C -0.107 4.107 27 C -0.132 4.132 28 C -0.108 4.108 29 C -0.123 4.123 30 H 0.264 0.736 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.160 0.840 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.714 -22.233 -1.059 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.133 3.867 10 N -0.286 5.286 11 C 0.300 3.700 12 O -0.377 6.377 13 C -0.027 4.027 14 O -0.238 6.238 15 C 0.328 3.672 16 O -0.387 6.387 17 C -0.224 4.224 18 C 0.013 3.987 19 C -0.337 4.337 20 C -0.130 4.130 21 C -0.187 4.187 22 C -0.395 4.395 23 S 0.541 5.459 24 C 0.064 3.936 25 C -0.146 4.146 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.127 4.127 29 C -0.143 4.143 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.178 0.822 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.856 -21.698 -1.165 23.860 hybrid contribution 2.117 0.819 0.288 2.289 sum 11.973 -20.878 -0.877 24.084 Atomic orbital electron populations 1.69920 1.05979 1.27168 1.50241 1.24902 0.94903 0.99223 0.94901 0.86469 0.79694 0.82857 0.78276 1.20443 1.21078 1.19868 1.21348 0.93418 0.90359 1.51378 0.92322 1.19488 0.86903 0.81398 0.98914 1.45889 1.45970 1.34747 1.01958 1.19796 0.81642 0.84199 0.84362 1.90733 1.56040 1.60533 1.30348 1.22471 1.00362 0.97920 0.81933 1.86263 1.61036 1.46193 1.30357 1.20165 0.77120 0.78579 0.91346 1.91057 1.52874 1.50952 1.43813 1.21503 1.04952 1.00160 0.95771 1.20811 0.90747 0.89920 0.97200 1.22579 0.99218 1.07495 1.04362 1.20703 0.97366 0.96650 0.98241 1.19821 0.97766 1.02969 0.98144 1.25370 0.99592 1.07420 1.07072 1.82952 1.10201 1.31299 1.21453 1.17785 0.92572 0.95000 0.88247 1.21369 0.95606 1.00117 0.97506 1.20971 0.99584 0.98036 0.93994 1.21075 0.93706 1.00616 0.99641 1.20976 0.95779 0.99849 0.96105 1.21303 1.00063 0.97861 0.95040 0.92609 0.93329 0.94333 0.88740 0.88952 0.83143 0.83158 0.84149 0.84820 0.82231 0.85930 0.86058 0.86307 0.85986 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.25 6.52 5.07 -5.20 -0.03 6.49 16 10 N -0.56 -12.06 2.51 -114.73 -0.29 -12.35 16 11 C 0.51 11.07 7.62 -10.98 -0.08 10.99 16 12 O -0.50 -12.86 16.12 -14.36 -0.23 -13.09 16 13 C 0.05 0.88 4.61 36.01 0.17 1.04 16 14 O -0.32 -5.50 9.64 -48.10 -0.46 -5.96 16 15 C 0.48 6.84 7.24 31.86 0.23 7.08 16 16 O -0.49 -7.40 11.29 -19.43 -0.22 -7.62 16 17 C -0.20 -2.15 9.96 -39.33 -0.39 -2.54 16 18 C 0.03 0.29 9.89 -39.22 -0.39 -0.10 16 19 C -0.22 -2.26 4.63 -38.76 -0.18 -2.44 16 20 C -0.10 -0.92 10.25 -40.30 -0.41 -1.34 16 21 C -0.16 -1.45 10.14 -41.41 -0.42 -1.87 16 22 C -0.26 -2.50 10.92 29.20 0.32 -2.18 16 23 S 0.27 2.92 19.31 -107.50 -2.08 0.85 16 24 C 0.16 2.85 4.52 -83.69 -0.38 2.47 16 25 C -0.13 -2.08 8.28 -39.39 -0.33 -2.40 16 26 C -0.11 -1.46 10.04 -39.61 -0.40 -1.85 16 27 C -0.13 -1.65 10.04 -39.55 -0.40 -2.04 16 28 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 29 C -0.12 -1.96 9.63 -39.39 -0.38 -2.34 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.05 1.40 7.48 -51.93 -0.39 1.01 16 32 H 0.04 1.02 7.82 -51.93 -0.41 0.61 16 33 H 0.09 1.52 6.56 -51.92 -0.34 1.18 16 34 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 35 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 2.03 7.84 -52.49 -0.41 1.62 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -34.68 397.20 -10.78 -45.46 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.32 Total: 1.90 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.88 Total: -6.45 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.45 Total: -38.04 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.91 Total: -26.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.08 Total: 0.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.68 -10.78 -45.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033715372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.969 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds