Wall clock time and date at job start Tue Mar 31 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 119.99994 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00280 * 3 2 1 5 5 H 1.48495 * 109.47600 * 30.00397 * 3 2 1 6 6 H 1.48498 * 109.47366 * 150.00593 * 3 2 1 7 7 C 1.38702 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00352 * 359.97438 * 7 2 1 9 9 O 1.34768 * 120.00113 * 180.27064 * 7 2 1 10 10 C 1.35562 * 117.00578 * 174.96599 * 9 7 2 11 11 C 1.39205 * 119.88887 * 186.12751 * 10 9 7 12 12 C 1.37091 * 120.11187 * 179.72161 * 11 10 9 13 13 C 1.40151 * 119.88306 * 0.52282 * 12 11 10 14 14 C 1.46684 * 120.11447 * 179.72350 * 13 12 11 15 15 C 1.36029 * 120.00405 * 205.13062 * 14 13 12 16 16 S 1.76403 * 125.54462 * 7.34282 * 15 14 13 17 17 C 1.76686 * 97.48542 * 180.02562 * 16 15 14 18 18 N 1.29465 * 126.81147 * 179.97438 * 17 16 15 19 19 C 1.50381 * 106.38426 * 0.02562 * 17 16 15 20 20 H 1.08998 * 108.93776 * 120.72844 * 19 17 16 21 21 C 1.50696 * 108.93624 * 239.40569 * 19 17 16 22 22 N 1.29029 * 124.91604 * 238.54449 * 21 19 17 23 23 C 1.31781 * 117.12888 * 179.97438 * 22 21 19 24 24 C 1.33646 * 114.49811 * 359.97438 * 23 22 21 25 25 S 1.70981 * 124.92036 * 58.23987 * 21 19 17 26 26 C 1.40322 * 125.54478 * 187.04337 * 15 14 13 27 27 O 1.21430 * 122.50632 * 359.97438 * 26 15 14 28 28 C 1.40164 * 119.77806 * 359.74786 * 13 12 11 29 29 C 1.37081 * 119.88099 * 0.02562 * 28 13 12 30 30 H 0.97002 * 120.00214 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.94573 * 359.97438 * 11 10 9 32 32 H 1.07999 * 120.05780 * 180.24696 * 12 11 10 33 33 H 1.07998 * 119.99567 * 25.12939 * 14 13 12 34 34 H 0.96996 * 120.00028 * 0.03326 * 18 17 16 35 35 H 1.07998 * 122.75397 * 180.02562 * 23 22 21 36 36 H 1.08001 * 126.03663 * 180.02562 * 24 23 22 37 37 H 1.07998 * 120.05527 * 179.97438 * 28 13 12 38 38 H 1.08002 * 119.93991 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0086 -1.2012 -0.0005 8 1 1.4686 -2.1366 -0.0005 9 8 3.3563 -1.2013 0.0050 10 6 3.9713 -2.4048 0.1101 11 6 5.3549 -2.4668 0.2503 12 6 5.9811 -3.6812 0.3627 13 6 5.2268 -4.8618 0.3253 14 6 5.8922 -6.1641 0.4390 15 6 5.3082 -7.2746 -0.0865 16 16 3.8554 -7.2933 -1.0869 17 6 3.7718 -9.0401 -1.3388 18 7 2.8803 -9.6835 -2.0224 19 6 4.9408 -9.6315 -0.6005 20 1 4.5693 -10.3335 0.1460 21 6 5.8119 -10.3755 -1.5796 22 7 6.1079 -11.6289 -1.5005 23 6 6.8842 -12.1237 -2.4435 24 6 7.2638 -11.2384 -3.3700 25 16 6.5449 -9.6828 -2.9603 26 6 5.7667 -8.5910 0.0740 27 8 6.7597 -8.8621 0.7183 28 6 3.8346 -4.7941 0.1782 29 6 3.2177 -3.5746 0.0713 30 1 -0.4850 0.8400 0.0004 31 1 5.9356 -1.5566 0.2747 32 1 7.0541 -3.7281 0.4755 33 1 6.8459 -6.2413 0.9400 34 1 2.1634 -9.1996 -2.4613 35 1 7.1881 -13.1598 -2.4663 36 1 7.8963 -11.4416 -4.2215 37 1 3.2491 -5.7011 0.1484 38 1 2.1449 -3.5213 -0.0416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034879690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:49 Heat of formation + Delta-G solvation = 61.931857 kcal Electronic energy + Delta-G solvation = -26683.536204 eV Core-core repulsion = 22711.210506 eV Total energy + Delta-G solvation = -3972.325698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 372.039 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64233 -39.64746 -39.40619 -37.33382 -36.34149 -33.85232 -32.78903 -32.40608 -30.71463 -30.08695 -28.50571 -26.01745 -25.14259 -23.81768 -22.54179 -22.35525 -21.00753 -20.46745 -19.26302 -18.49914 -18.24924 -17.93563 -17.66984 -16.49807 -16.25252 -15.65206 -15.27306 -15.12281 -14.95408 -14.61211 -14.41318 -14.22725 -14.04596 -13.91871 -13.81784 -13.45375 -13.10621 -13.02599 -12.63871 -12.50936 -12.17569 -11.82773 -11.69672 -11.62659 -11.17593 -11.12029 -10.99799 -10.44061 -10.42685 -10.26187 -9.95883 -9.82526 -9.69905 -9.46551 -9.19188 -9.09858 -8.63500 -8.15353 -7.22952 -6.77567 -4.38445 0.21089 0.38866 1.02742 1.19655 1.35769 1.46997 1.84730 1.87949 2.05887 2.54965 2.71796 3.03631 3.06133 3.18326 3.27506 3.72989 3.95244 3.97496 4.20722 4.43715 4.65257 4.76722 4.79164 4.89084 4.99684 5.10515 5.19982 5.28880 5.31419 5.40344 5.65518 5.76318 5.81170 5.85871 6.08952 6.21424 6.48597 6.72859 6.86826 6.96207 7.07440 7.24035 7.33041 7.42395 7.46265 7.66216 8.53934 9.12644 10.27416 Molecular weight = 372.04amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.002105 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.966333 B =13297.554144 C =13819.995454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.388 4.388 8 H 0.114 0.886 9 O -0.190 6.190 10 C 0.179 3.821 11 C -0.198 4.198 12 C -0.028 4.028 13 C -0.214 4.214 14 C 0.118 3.882 15 C -0.309 4.309 16 S -0.022 6.022 17 C 0.187 3.813 18 N -0.615 5.615 19 C -0.043 4.043 20 H 0.157 0.843 21 C 0.070 3.930 22 N -0.458 5.458 23 C 0.040 3.960 24 C -0.259 4.259 25 S 0.149 5.851 26 C 0.416 3.584 27 O -0.434 6.434 28 C -0.030 4.030 29 C -0.227 4.227 30 H 0.286 0.714 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.356 0.644 35 H 0.179 0.821 36 H 0.181 0.819 37 H 0.132 0.868 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -15.142 -4.374 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.463 4.463 8 H 0.132 0.868 9 O -0.091 6.091 10 C 0.123 3.877 11 C -0.218 4.218 12 C -0.047 4.047 13 C -0.215 4.215 14 C 0.091 3.909 15 C -0.422 4.422 16 S 0.217 5.783 17 C -0.120 4.120 18 N -0.237 5.237 19 C -0.070 4.070 20 H 0.174 0.826 21 C -0.209 4.209 22 N -0.172 5.172 23 C -0.111 4.111 24 C -0.398 4.398 25 S 0.403 5.597 26 C 0.294 3.706 27 O -0.311 6.311 28 C -0.050 4.050 29 C -0.246 4.246 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.196 0.804 36 H 0.198 0.802 37 H 0.149 0.851 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.741 -14.404 -4.776 18.592 hybrid contribution 0.730 -0.473 0.257 0.907 sum 11.470 -14.878 -4.519 19.322 Atomic orbital electron populations 1.69611 1.05792 1.29407 1.44134 1.24596 0.95141 0.99337 0.94928 0.86133 0.80421 0.80827 0.79396 1.19434 1.20330 1.18029 1.20970 0.76474 0.97153 1.51668 0.86838 1.83485 1.23191 1.26506 1.75965 1.19439 0.91828 0.85192 0.91283 1.20045 0.91841 0.98189 1.11683 1.20743 0.98615 0.90732 0.94562 1.18471 0.93630 0.91528 1.17908 1.22176 0.94990 0.89399 0.84351 1.22334 1.05976 0.97651 1.16260 1.85687 1.30409 1.04452 1.57706 1.26535 0.95314 0.95289 0.94837 1.68646 1.05738 1.39370 1.09948 1.19219 0.91836 0.98924 0.97002 0.82591 1.25690 1.02502 0.93368 0.99319 1.66183 1.14038 1.10348 1.26605 1.21786 0.97117 1.01708 0.90516 1.27206 1.09797 0.95709 1.07104 1.84234 1.42290 1.12346 1.20796 1.19621 0.84323 0.87938 0.78757 1.90634 1.22563 1.84949 1.32946 1.21211 0.93285 0.97533 0.92999 1.21061 1.01584 0.91378 1.10557 0.90317 0.85768 0.85871 0.83758 0.82256 0.80363 0.80216 0.85076 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.37 13.96 55.48 0.77 -21.59 16 2 C 0.07 1.69 5.49 -17.52 -0.10 1.59 16 3 Si 0.91 19.39 28.62 -169.99 -4.86 14.53 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -9.73 9.94 30.90 0.31 -9.42 16 8 H 0.11 2.89 5.42 -52.48 -0.28 2.61 16 9 O -0.19 -4.40 8.57 0.80 0.01 -4.40 16 10 C 0.18 3.57 6.66 -38.86 -0.26 3.31 16 11 C -0.20 -3.29 9.95 -39.64 -0.39 -3.69 16 12 C -0.03 -0.39 9.77 -39.28 -0.38 -0.77 16 13 C -0.21 -3.09 5.74 -105.05 -0.60 -3.69 16 14 C 0.12 1.48 9.61 -36.97 -0.36 1.13 16 15 C -0.31 -4.01 5.99 -39.59 -0.24 -4.24 16 16 S -0.02 -0.28 18.58 -107.50 -2.00 -2.28 16 17 C 0.19 2.28 7.10 -13.43 -0.10 2.19 16 18 N -0.61 -7.44 14.09 33.55 0.47 -6.97 16 19 C -0.04 -0.54 3.07 -95.05 -0.29 -0.84 16 20 H 0.16 1.89 8.14 -51.93 -0.42 1.47 16 21 C 0.07 0.91 5.84 -13.46 -0.08 0.83 16 22 N -0.46 -6.04 10.54 -11.86 -0.13 -6.16 16 23 C 0.04 0.41 11.35 -19.18 -0.22 0.20 16 24 C -0.26 -2.35 11.37 29.12 0.33 -2.02 16 25 S 0.15 1.65 22.86 -107.50 -2.46 -0.81 16 26 C 0.42 5.56 6.20 -34.34 -0.21 5.35 16 27 O -0.43 -6.63 17.51 5.43 0.10 -6.54 16 28 C -0.03 -0.48 8.38 -39.28 -0.33 -0.81 16 29 C -0.23 -4.25 9.12 -39.64 -0.36 -4.62 16 30 H 0.29 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.52 7.96 -52.49 -0.42 1.10 16 34 H 0.36 3.70 8.92 -40.82 -0.36 3.34 16 35 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.94 4.91 -30.39 -0.15 1.79 16 38 H 0.14 2.75 5.63 -52.49 -0.30 2.45 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -28.17 363.13 -8.66 -36.83 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -2.76 Total: 7.41 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -3.28 Total: -15.49 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 1.12 Total: -34.72 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.10 Total: -10.93 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.86 Total: 14.53 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -4.46 Total: -3.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.17 -8.66 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034879690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.763 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds