Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29426 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48507 * 109.46844 * 269.99993 * 3 2 1 5 5 H 1.48491 * 109.47291 * 30.00036 * 3 2 1 6 6 H 1.48503 * 109.47146 * 150.00317 * 3 2 1 7 7 C 1.46522 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00463 * 178.26830 * 7 2 1 9 9 O 1.22319 * 120.00177 * 358.54970 * 7 2 1 10 10 C 1.35540 * 117.00178 * 186.09926 * 9 7 2 11 11 C 1.38775 * 120.16809 * 6.11660 * 10 9 7 12 12 C 1.38082 * 120.08401 * 179.97438 * 11 10 9 13 13 C 1.38566 * 120.42370 * 359.97438 * 12 11 10 14 14 C 1.37859 * 120.32747 * 359.97438 * 13 12 11 15 15 C 1.39727 * 119.90868 * 359.76876 * 14 13 12 16 16 C 1.47224 * 120.20602 * 180.22737 * 15 14 13 17 17 N 1.29955 * 119.99802 * 185.79713 * 16 15 14 18 18 N 1.40103 * 119.99551 * 187.56932 * 17 16 15 19 19 C 1.39496 * 119.99773 * 186.18655 * 18 17 16 20 20 C 1.39026 * 120.08245 * 6.66591 * 19 18 17 21 21 C 1.38054 * 119.91229 * 179.77021 * 20 19 18 22 22 C 1.38327 * 120.08587 * 0.51053 * 21 20 19 23 23 N 1.48047 * 119.91653 * 179.72233 * 22 21 20 24 24 O 1.21798 * 119.99690 * 180.02562 * 23 22 21 25 25 O 1.21794 * 119.99926 * 0.02562 * 23 22 21 26 26 C 1.38284 * 120.16640 * 359.74126 * 22 21 20 27 27 C 1.38094 * 120.08319 * 0.02562 * 26 22 21 28 28 N 1.48025 * 120.04373 * 179.97438 * 27 26 22 29 29 O 1.31707 * 119.99948 * 7.76550 * 28 27 26 30 30 O 1.31703 * 120.00222 * 187.76246 * 28 27 26 31 31 H 0.97009 * 119.99539 * 359.97438 * 1 2 3 32 32 H 1.08007 * 119.95719 * 359.97438 * 11 10 9 33 33 H 1.07997 * 119.78844 * 179.97438 * 12 11 10 34 34 H 1.07993 * 119.83639 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.04631 * 179.97438 * 14 13 12 36 36 H 1.08005 * 119.99780 * 5.80326 * 16 15 14 37 37 H 0.97000 * 120.00664 * 6.18430 * 18 17 16 38 38 H 1.07995 * 120.03999 * 0.02649 * 20 19 18 39 39 H 1.08007 * 119.95634 * 180.25024 * 21 20 19 40 40 H 1.07997 * 119.95977 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2943 0.0000 0.0000 3 14 2.2283 1.6177 0.0000 4 1 2.4758 2.0463 -1.4002 5 1 1.4259 2.6526 0.7000 6 1 3.5259 1.4400 0.7000 7 6 2.0268 -1.2689 0.0006 8 1 3.1065 -1.2693 -0.0277 9 8 1.4155 -2.3281 0.0279 10 6 2.1506 -3.4597 0.1549 11 6 3.5186 -3.3818 0.3747 12 6 4.2656 -4.5358 0.5044 13 6 3.6584 -5.7783 0.4172 14 6 2.3005 -5.8758 0.2003 15 6 1.5305 -4.7169 0.0724 16 6 0.0790 -4.8133 -0.1544 17 7 -0.6154 -3.7393 -0.3850 18 7 -2.0135 -3.8082 -0.4431 19 6 -2.7522 -2.6856 -0.8174 20 6 -2.1021 -1.5415 -1.2658 21 6 -2.8368 -0.4341 -1.6398 22 6 -4.2175 -0.4582 -1.5587 23 7 -5.0013 0.7336 -1.9549 24 8 -6.2171 0.7140 -1.8837 25 8 -4.4305 1.7335 -2.3520 26 6 -4.8674 -1.5927 -1.1082 27 6 -4.1395 -2.7060 -0.7369 28 7 -4.8361 -3.9196 -0.2543 29 8 -6.1492 -3.9961 -0.3219 30 8 -4.1428 -4.9231 0.2428 31 1 -0.4850 0.8402 0.0004 32 1 3.9995 -2.4172 0.4443 33 1 5.3300 -4.4696 0.6749 34 1 4.2519 -6.6747 0.5197 35 1 1.8320 -6.8465 0.1327 36 1 -0.4087 -5.7767 -0.1289 37 1 -2.4680 -4.6365 -0.2232 38 1 -1.0240 -1.5205 -1.3254 39 1 -2.3326 0.4538 -1.9921 40 1 -5.9455 -1.6080 -1.0467 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043776138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = 141.063636 kcal Electronic energy + Delta-G solvation = -33210.632398 eV Core-core repulsion = 28388.525121 eV Total energy + Delta-G solvation = -4822.107277 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.099 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -42.11220 -40.57119 -40.43037 -38.30444 -37.53360 -36.74287 -36.47027 -34.58754 -33.49220 -33.17615 -31.94072 -30.88111 -29.59547 -28.72823 -26.92032 -25.81222 -25.54973 -23.74113 -22.62889 -22.10080 -21.66061 -20.27287 -19.69401 -18.79430 -18.70907 -18.05388 -17.98839 -17.52126 -17.45441 -17.21474 -16.71253 -16.12010 -15.41590 -15.05179 -14.86973 -14.68419 -14.52848 -14.31404 -14.01840 -13.87291 -13.45527 -13.02560 -12.81687 -12.58890 -12.47002 -12.09725 -11.75348 -11.52416 -11.46784 -11.34302 -11.25140 -11.08644 -11.06222 -11.04530 -10.96485 -10.86509 -10.69424 -10.43638 -9.85543 -9.83198 -9.48766 -9.37633 -8.59590 -7.90528 -7.33178 -7.24702 -4.03116 -0.76461 -0.11049 0.88817 0.99606 1.21866 1.53229 1.58901 2.17284 2.50978 2.79003 2.82933 2.85374 2.89717 3.25181 3.49375 3.99150 4.16215 4.31597 4.40204 4.52448 4.70451 4.76467 4.79616 5.05465 5.22260 5.40579 5.55216 5.59121 5.64152 5.80053 5.82958 5.99721 6.05872 6.31318 6.43168 6.44394 6.52838 6.61655 6.68628 6.71653 6.86264 7.02954 7.11380 7.24192 7.38594 7.65006 7.73794 8.14102 8.38177 9.46930 9.90796 Molecular weight = 372.10amu Principal moments of inertia in cm(-1) A = 0.008216 B = 0.003749 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.257688 B = 7467.221562 C =10641.971893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.048 3.952 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.378 4.378 8 H 0.093 0.907 9 O -0.057 6.057 10 C 0.107 3.893 11 C -0.231 4.231 12 C -0.054 4.054 13 C -0.241 4.241 14 C -0.025 4.025 15 C -0.167 4.167 16 C 0.141 3.859 17 N -0.258 5.258 18 N -0.528 5.528 19 C 0.333 3.667 20 C -0.111 4.111 21 C 0.007 3.993 22 C -0.100 4.100 23 N 0.044 4.956 24 O -0.175 6.175 25 O -0.161 6.161 26 C 0.046 3.954 27 C -0.092 4.092 28 N 0.018 4.982 29 O -0.173 6.173 30 O -0.233 6.233 31 H 0.289 0.711 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.401 0.599 38 H 0.206 0.794 39 H 0.164 0.836 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 -2.723 -2.099 3.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.170 4.170 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.458 4.458 8 H 0.110 0.890 9 O 0.054 5.946 10 C 0.046 3.954 11 C -0.251 4.251 12 C -0.074 4.074 13 C -0.260 4.260 14 C -0.046 4.046 15 C -0.173 4.173 16 C -0.059 4.059 17 N -0.070 5.070 18 N -0.249 5.249 19 C 0.211 3.789 20 C -0.133 4.133 21 C -0.015 4.015 22 C -0.187 4.187 23 N 0.561 4.439 24 O -0.387 6.387 25 O -0.377 6.377 26 C 0.025 3.975 27 C -0.190 4.190 28 N 0.478 4.522 29 O -0.365 6.365 30 O -0.400 6.400 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.254 0.746 38 H 0.223 0.777 39 H 0.181 0.819 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.576 -1.848 -2.187 2.920 hybrid contribution -0.295 -0.501 0.426 0.721 sum 0.281 -2.349 -1.761 2.949 Atomic orbital electron populations 1.68872 1.07769 1.30154 1.34480 1.26952 0.95349 0.98905 0.95751 0.85634 0.79743 0.78385 0.79728 1.18965 1.19534 1.18414 1.21204 0.93570 0.83122 1.47887 0.89036 1.80471 1.36569 1.11702 1.65846 1.19240 0.90000 0.86024 1.00090 1.20831 0.93885 0.98780 1.11559 1.20773 0.98230 0.92323 0.96051 1.20345 0.94525 0.96756 1.14420 1.20656 0.93501 0.95461 0.94999 1.16973 0.88920 0.91169 1.20237 1.24328 0.94190 0.93557 0.93823 1.75722 0.85758 1.25179 1.20369 1.47362 1.04923 1.11781 1.60855 1.17671 0.85827 0.88783 0.86642 1.21621 1.04517 0.88232 0.98951 1.21077 0.89467 0.99738 0.91206 1.20526 0.92016 0.87904 1.18277 1.43288 1.01057 1.01771 0.97798 1.94529 0.95770 1.89475 1.58920 1.94539 1.72996 1.22002 1.48113 1.20200 1.02573 0.87502 0.87241 1.19332 0.89449 0.87521 1.22698 1.50022 1.03049 1.02131 0.96973 1.96272 0.88902 1.89155 1.62182 1.95929 1.64022 1.29092 1.50992 0.89819 0.85818 0.87618 0.87562 0.86925 0.87729 0.74588 0.77718 0.81886 0.80744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -16.14 10.96 55.98 0.61 -15.53 16 2 C 0.05 0.97 5.69 -15.23 -0.09 0.88 16 3 Si 0.94 15.92 29.64 -169.99 -5.04 10.88 16 4 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 5 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 6 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 7 C -0.38 -8.22 9.42 34.07 0.32 -7.90 16 8 H 0.09 1.90 5.14 -52.49 -0.27 1.63 16 9 O -0.06 -1.27 7.18 21.54 0.15 -1.11 16 10 C 0.11 2.18 6.60 -38.56 -0.25 1.93 16 11 C -0.23 -4.29 9.06 -39.44 -0.36 -4.65 16 12 C -0.05 -0.87 10.03 -39.52 -0.40 -1.27 16 13 C -0.24 -3.64 10.03 -39.60 -0.40 -4.04 16 14 C -0.03 -0.39 9.79 -39.16 -0.38 -0.78 16 15 C -0.17 -3.02 5.89 -104.87 -0.62 -3.64 16 16 C 0.14 2.41 10.74 -14.70 -0.16 2.25 16 17 N -0.26 -4.85 8.24 32.13 0.26 -4.59 16 18 N -0.53 -9.07 6.27 32.41 0.20 -8.87 16 19 C 0.33 5.54 6.70 -83.80 -0.56 4.98 16 20 C -0.11 -1.85 8.52 -39.36 -0.34 -2.18 16 21 C 0.01 0.11 9.55 -39.62 -0.38 -0.27 16 22 C -0.10 -1.47 6.86 -79.88 -0.55 -2.02 16 23 N 0.04 0.69 4.46 33.99 0.15 0.85 16 24 O -0.17 -2.78 18.44 -29.46 -0.54 -3.33 16 25 O -0.16 -2.60 18.44 -29.46 -0.54 -3.14 16 26 C 0.05 0.65 9.08 -39.62 -0.36 0.29 16 27 C -0.09 -1.45 6.89 -79.72 -0.55 -2.00 16 28 N 0.02 0.29 4.99 34.07 0.17 0.46 16 29 O -0.17 -2.90 19.18 -31.57 -0.61 -3.51 16 30 O -0.23 -4.05 16.36 -31.57 -0.52 -4.56 16 31 H 0.29 5.45 8.27 -40.82 -0.34 5.11 16 32 H 0.12 2.25 5.79 -52.48 -0.30 1.94 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.44 8.05 -52.48 -0.42 1.02 16 37 H 0.40 6.52 5.06 -183.11 -0.93 5.59 16 38 H 0.21 3.92 5.72 -52.49 -0.30 3.62 16 39 H 0.16 2.22 7.60 -52.48 -0.40 1.82 16 40 H 0.18 2.24 7.15 -52.49 -0.38 1.86 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -23.45 367.26 -8.61 -32.06 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -3.40 Total: 13.24 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -5.06 Total: -18.40 kcal Atomic # 7 Polarization: -29.08 SS G_CDS: 1.40 Total: -27.68 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -2.05 Total: -15.65 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.04 Total: 10.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -23.45 -8.61 -32.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043776138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.128 kcal (2) G-P(sol) polarization free energy of solvation -23.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds