Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47327 * 59.99628 * 10 8 6 12 12 H 1.48507 * 109.47304 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47123 * 299.99830 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99865 * 179.97438 * 19 18 17 22 22 N 1.40095 * 119.99932 * 180.02562 * 21 19 18 23 23 C 1.34776 * 120.00147 * 179.97438 * 22 21 19 24 24 O 1.21514 * 119.99634 * 0.02562 * 23 22 21 25 25 C 1.48146 * 119.99924 * 180.02562 * 23 22 21 26 26 C 1.39815 * 120.92725 * 359.71883 * 25 23 22 27 27 C 1.38145 * 119.00577 * 179.77718 * 26 25 23 28 28 N 1.31818 * 120.89358 * 0.51570 * 27 26 25 29 29 C 1.31816 * 122.04929 * 359.73466 * 28 27 26 30 30 C 1.38146 * 120.89226 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 32 32 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 33 33 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 34 34 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 35 35 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 36 36 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 38 38 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 39 39 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 40 40 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 41 41 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 42 42 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 43 43 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 44 44 H 0.96998 * 119.99578 * 0.02562 * 21 19 18 45 45 H 0.97006 * 120.00187 * 359.97438 * 22 21 19 46 46 H 1.08003 * 120.49761 * 0.02562 * 26 25 23 47 47 H 1.07997 * 119.55811 * 180.27032 * 27 26 25 48 48 H 1.07997 * 119.54800 * 179.97438 * 29 28 27 49 49 H 1.08001 * 120.49633 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 5.6536 3.6435 -4.1566 12 1 7.9707 3.8397 -3.4674 13 1 7.0892 1.6891 -4.1580 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0484 -5.0587 0.4137 21 7 1.0398 -5.1174 2.6316 22 7 0.6055 -6.4494 2.6372 23 6 0.4038 -7.0874 3.8071 24 8 0.5982 -6.5072 4.8570 25 6 -0.0549 -8.4961 3.8131 26 6 -0.2901 -9.1802 2.6167 27 6 -0.7127 -10.4945 2.6685 28 7 -0.9036 -11.0990 3.8242 29 6 -0.6986 -10.4892 4.9748 30 6 -0.2708 -9.1763 5.0154 31 1 -0.3634 0.0038 1.0276 32 1 -0.3633 0.8880 -0.5172 33 1 -0.3633 -0.8919 -0.5105 34 1 4.5588 2.4344 0.4996 35 1 5.6118 0.9994 0.4977 36 1 7.7407 3.6692 -0.8822 37 1 5.1240 -1.8136 -1.0369 38 1 5.6539 -1.0899 0.5006 39 1 4.6103 -2.5319 0.5087 40 1 0.8985 -2.6365 -0.4975 41 1 2.5908 -3.1883 -0.5052 42 1 2.6712 -2.9761 1.9640 43 1 0.9790 -2.4243 1.9718 44 1 1.1950 -4.6543 3.4696 45 1 0.4500 -6.9124 1.7991 46 1 -0.1398 -8.6899 1.6662 47 1 -0.8928 -11.0328 1.7497 48 1 -0.8682 -11.0231 5.8981 49 1 -0.1053 -8.6828 5.9617 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044907532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = 58.078420 kcal Electronic energy + Delta-G solvation = -31591.860288 eV Core-core repulsion = 27135.539353 eV Total energy + Delta-G solvation = -4456.320935 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 371.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33326 -40.70436 -40.23911 -39.15465 -35.90424 -34.48662 -33.71756 -33.46332 -32.52840 -32.05927 -31.43053 -30.08983 -29.00685 -26.93240 -25.92061 -25.42490 -24.17264 -23.77839 -22.33398 -22.00746 -21.04925 -18.92556 -18.84745 -18.71899 -18.35308 -17.05877 -16.75860 -16.70108 -16.30191 -16.24737 -15.78245 -15.55843 -15.34325 -14.82121 -14.55715 -14.44501 -14.34701 -14.27914 -14.06260 -13.78674 -13.16433 -12.99586 -12.76844 -12.53068 -12.40614 -12.36895 -12.26473 -11.85431 -11.79149 -11.69573 -11.39520 -11.33707 -11.09270 -11.02987 -10.84281 -10.80966 -10.59833 -10.40944 -10.27697 -10.13126 -9.85841 -9.78653 -9.67010 -8.85803 -8.67139 -8.23628 -7.55089 -6.29195 -4.36775 0.01907 0.43935 1.27248 2.03077 2.39618 2.71108 3.20870 3.21431 3.24536 3.25009 3.28807 3.41066 3.56230 3.79378 3.92191 4.09826 4.25606 4.27035 4.41052 4.52781 4.84369 5.02990 5.05678 5.09796 5.11291 5.13751 5.26768 5.31626 5.34250 5.57216 5.59595 5.74406 5.87266 5.89546 5.92737 5.95369 5.99569 6.10686 6.18257 6.20546 6.30604 6.35181 6.47979 6.78382 6.98956 7.00691 7.07121 7.26527 7.32040 7.45878 7.63019 7.85062 7.89331 8.00574 8.62030 8.71466 9.29792 10.78404 Molecular weight = 371.17amu Principal moments of inertia in cm(-1) A = 0.020547 B = 0.001413 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.427987 B =19814.763239 C =20064.205646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.052 3.948 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.096 3.904 15 C -0.087 4.087 16 C -0.272 4.272 17 C -0.009 4.009 18 C -0.123 4.123 19 C 0.517 3.483 20 O -0.536 6.536 21 N -0.527 5.527 22 N -0.515 5.515 23 C 0.558 3.442 24 O -0.527 6.527 25 C -0.079 4.079 26 C -0.142 4.142 27 C 0.101 3.899 28 N -0.467 5.467 29 C 0.099 3.901 30 C -0.111 4.111 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.269 0.731 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.434 0.566 45 H 0.432 0.568 46 H 0.142 0.858 47 H 0.166 0.834 48 H 0.167 0.833 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.110 -25.180 9.844 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 N -0.120 5.120 4 N -0.103 5.103 5 C 0.139 3.861 6 C -0.576 4.576 7 H 0.082 0.918 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.036 4.036 15 C -0.145 4.145 16 C -0.285 4.285 17 C -0.048 4.048 18 C -0.165 4.165 19 C 0.306 3.694 20 O -0.411 6.411 21 N -0.278 5.278 22 N -0.262 5.262 23 C 0.344 3.656 24 O -0.403 6.403 25 C -0.092 4.092 26 C -0.162 4.162 27 C -0.056 4.056 28 N -0.177 5.177 29 C -0.058 4.058 30 C -0.132 4.132 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.276 0.724 45 H 0.275 0.725 46 H 0.159 0.841 47 H 0.183 0.817 48 H 0.184 0.816 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.033 -24.468 9.873 29.885 hybrid contribution 0.756 0.444 -0.945 1.289 sum -13.277 -24.024 8.928 28.864 Atomic orbital electron populations 1.20035 0.88018 1.02474 1.01864 1.21951 0.96129 0.90747 1.02462 1.77296 0.87483 1.22644 1.24545 1.49264 1.05815 1.04204 1.50995 1.19663 0.77937 0.89557 0.98938 1.21263 1.13138 1.31890 0.91286 0.91844 1.24920 0.95670 0.94957 0.98157 1.69904 1.18929 1.32856 1.31243 0.86412 0.78036 0.78488 0.83742 1.19937 1.20920 1.19949 1.20789 0.96099 0.85732 1.00964 1.20362 0.93794 0.97121 1.03237 1.19273 0.91378 0.94854 1.22952 1.19399 1.01899 0.91171 0.92346 1.21769 1.03631 0.88803 1.02266 1.21564 0.76640 0.89468 0.81772 1.90724 1.51330 1.67987 1.31020 1.45295 1.69460 1.01641 1.11392 1.44667 1.67549 1.03786 1.10197 1.18230 0.78459 0.86067 0.82813 1.90830 1.51511 1.67104 1.30805 1.20019 1.01310 0.92895 0.94954 1.22427 0.99040 0.96639 0.98143 1.22835 0.94572 0.91600 0.96593 1.67606 1.12709 1.38689 0.98668 1.22896 0.94641 0.91574 0.96659 1.22341 0.96602 0.95511 0.98731 0.91544 0.91523 0.91233 0.93037 0.93065 0.92176 0.90386 0.90862 0.91088 0.91002 0.91137 0.88189 0.88110 0.72370 0.72480 0.84062 0.81687 0.81611 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.26 36.01 0.37 -0.50 16 2 C 0.05 0.93 7.22 -82.40 -0.59 0.34 16 3 N -0.30 -6.60 12.58 33.67 0.42 -6.18 16 4 N -0.32 -7.32 3.60 -58.32 -0.21 -7.53 16 5 C 0.26 6.46 6.00 -5.20 -0.03 6.43 16 6 C -0.54 -14.65 9.39 -34.44 -0.32 -14.98 16 7 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 10 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 C 0.10 1.81 6.93 -82.26 -0.57 1.24 16 15 C -0.09 -1.35 9.72 36.00 0.35 -1.00 16 16 C -0.27 -4.54 5.35 -105.05 -0.56 -5.11 16 17 C -0.01 -0.11 4.41 -27.88 -0.12 -0.24 16 18 C -0.12 -1.19 5.68 -27.89 -0.16 -1.35 16 19 C 0.52 5.17 7.95 -10.98 -0.09 5.08 16 20 O -0.54 -6.85 15.82 5.56 0.09 -6.77 16 21 N -0.53 -4.51 6.26 31.22 0.20 -4.32 16 22 N -0.51 -4.12 6.22 30.60 0.19 -3.93 16 23 C 0.56 4.79 7.91 -12.19 -0.10 4.70 16 24 O -0.53 -5.98 16.28 5.35 0.09 -5.90 16 25 C -0.08 -0.53 5.91 -104.65 -0.62 -1.15 16 26 C -0.14 -0.70 9.62 -39.03 -0.38 -1.08 16 27 C 0.10 0.52 11.17 -17.59 -0.20 0.32 16 28 N -0.47 -3.18 10.34 -13.31 -0.14 -3.32 16 29 C 0.10 0.54 11.17 -17.59 -0.20 0.34 16 30 C -0.11 -0.67 9.68 -39.02 -0.38 -1.05 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.79 7.25 -51.93 -0.38 0.42 16 34 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.05 1.27 7.05 -51.93 -0.37 0.91 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.18 7.08 -51.93 -0.37 0.81 16 39 H 0.07 0.86 7.77 -51.93 -0.40 0.46 16 40 H 0.07 0.91 7.20 -51.93 -0.37 0.54 16 41 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 44 H 0.43 3.26 8.00 -182.60 -1.46 1.80 16 45 H 0.43 2.90 6.14 -182.60 -1.12 1.78 16 46 H 0.14 0.39 6.54 -52.48 -0.34 0.04 16 47 H 0.17 0.42 8.06 -52.49 -0.42 -0.01 16 48 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 49 H 0.15 0.81 7.74 -52.49 -0.41 0.41 16 LS Contribution 422.67 15.07 6.37 6.37 Total: -1.00 -35.05 422.67 -9.52 -44.57 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.55 Total: 1.45 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.69 Total: -6.29 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 1.20 Total: -49.39 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.18 Total: -12.66 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.05 -9.52 -44.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044907532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.648 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds