Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35947 * 116.99869 * 2 1 4 4 C 1.38180 * 120.01171 * 0.02562 * 3 2 1 5 5 C 1.39756 * 119.85775 * 179.97438 * 4 3 2 6 6 C 1.47359 * 120.06947 * 179.97438 * 5 4 3 7 7 N 1.29842 * 120.00176 * 179.97438 * 6 5 4 8 8 N 1.40101 * 119.99875 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00065 * 180.02562 * 8 7 6 10 10 S 1.71204 * 120.00012 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99881 * 0.02562 * 9 8 7 12 12 C 1.39863 * 120.00045 * 185.68874 * 11 9 8 13 13 C 1.38893 * 120.07228 * 220.93964 * 12 11 9 14 14 C 1.38103 * 119.92505 * 179.97438 * 13 12 11 15 15 C 1.38283 * 120.07393 * 359.97438 * 14 13 12 16 16 C 1.38285 * 120.14736 * 0.04041 * 15 14 13 17 17 C 1.38105 * 120.07091 * 359.96116 * 16 15 14 18 18 C 1.39833 * 119.86927 * 0.25042 * 5 4 3 19 19 C 1.37768 * 120.01097 * 359.51756 * 18 5 4 20 20 C 1.38963 * 120.14479 * 0.46103 * 19 18 5 21 21 O 1.35702 * 119.93249 * 179.76900 * 20 19 18 22 22 C 1.34790 * 116.99868 * 5.83706 * 21 20 19 23 23 H 1.07991 * 120.00339 * 354.86022 * 22 21 20 24 24 C 1.38620 * 119.99667 * 174.85899 * 22 21 20 25 25 N 1.31577 * 119.99665 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00046 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47092 * 89.99890 * 26 24 22 28 28 H 1.48496 * 109.47398 * 209.99869 * 26 24 22 29 29 H 1.48501 * 109.47188 * 330.00512 * 26 24 22 30 30 H 1.09001 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47101 * 300.00368 * 1 2 3 32 32 H 1.09007 * 109.47101 * 59.99943 * 1 2 3 33 33 H 1.08002 * 120.07530 * 359.95505 * 4 3 2 34 34 H 1.08004 * 119.99632 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99866 * 359.97438 * 8 7 6 36 36 H 0.97005 * 120.00336 * 5.68533 * 11 9 8 37 37 H 1.08002 * 120.03275 * 359.69751 * 13 12 11 38 38 H 1.08009 * 119.96108 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.92405 * 180.02562 * 15 14 13 40 40 H 1.07993 * 119.96453 * 179.97438 * 16 15 14 41 41 H 1.07994 * 120.04091 * 179.97438 * 17 16 15 42 42 H 1.08005 * 119.99433 * 179.74487 * 18 5 4 43 43 H 1.08003 * 119.92407 * 180.21270 * 19 18 5 44 44 H 0.97006 * 119.99515 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3703 0.0005 5 6 1.9316 3.6139 0.0011 6 6 1.1338 4.8528 0.0011 7 7 1.7277 6.0075 0.0021 8 7 0.9692 7.1854 0.0026 9 6 1.5856 8.3839 0.0031 10 16 0.6586 9.8233 0.0031 11 7 2.9318 8.4492 0.0026 12 6 3.5718 9.6869 0.1232 13 6 4.6935 9.9683 -0.6460 14 6 5.3229 11.1916 -0.5249 15 6 4.8372 12.1361 0.3607 16 6 3.7208 11.8591 1.1283 17 6 3.0867 10.6377 1.0120 18 6 3.3283 3.6801 -0.0042 19 6 4.0732 2.5212 0.0001 20 6 3.4396 1.2844 0.0000 21 8 4.1775 0.1456 -0.0005 22 6 5.5130 0.2817 0.1212 23 1 5.9569 1.2661 0.1299 24 6 6.3166 -0.8420 0.2353 25 7 7.6202 -0.7091 0.3547 26 14 5.5487 -2.5448 0.2211 27 1 5.4765 -3.0436 -1.1758 28 1 6.3790 -3.4691 1.0344 29 1 4.1801 -2.4754 0.7932 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.2152 2.3154 0.0002 34 1 0.0550 4.8004 0.0011 35 1 0.0003 7.1383 0.0019 36 1 3.4568 7.6379 -0.0813 37 1 5.0757 9.2295 -1.3349 38 1 6.1954 11.4108 -1.1225 39 1 5.3310 13.0921 0.4532 40 1 3.3442 12.5987 1.8192 41 1 2.2152 10.4217 1.6120 42 1 3.8233 4.6401 -0.0080 43 1 5.1519 2.5740 -0.0006 44 1 8.1825 -1.4954 0.4349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045921136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = 63.920626 kcal Electronic energy + Delta-G solvation = -28843.453232 eV Core-core repulsion = 24662.012659 eV Total energy + Delta-G solvation = -4181.440573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.109 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.31733 -40.05117 -38.65120 -38.04015 -37.02492 -35.79692 -33.16391 -32.62521 -31.13161 -30.11435 -29.80175 -29.09380 -27.03488 -25.85387 -24.62508 -23.35184 -22.86904 -22.13532 -21.68820 -20.65251 -19.27901 -18.44953 -18.07714 -17.98516 -17.24277 -16.42152 -16.16641 -16.02864 -15.55912 -15.52114 -15.40112 -14.75887 -14.54385 -14.44542 -14.15533 -14.08576 -13.98481 -13.59092 -13.50997 -13.22433 -12.56925 -12.48032 -12.45777 -11.95877 -11.82240 -11.74648 -11.60067 -11.35973 -11.33699 -11.12377 -11.04434 -10.85525 -10.59806 -10.40321 -9.90361 -9.75608 -9.17726 -9.13366 -8.66576 -8.29792 -8.01721 -7.44170 -7.29557 -6.72782 -4.32720 0.41852 1.01951 1.29557 1.42185 1.61397 1.83806 2.38027 2.52300 2.66519 3.08754 3.11430 3.28189 3.61813 3.66242 4.02685 4.15314 4.34401 4.47357 4.66314 4.77813 4.80319 4.81800 4.98854 5.12929 5.20834 5.25644 5.26703 5.31157 5.37722 5.44452 5.56528 5.58490 5.77801 5.85976 5.89084 5.95703 6.08720 6.16907 6.24864 6.38075 6.44581 6.49899 6.65063 6.77210 6.88211 7.00995 7.12644 7.34030 7.61778 7.64494 7.81083 8.59545 9.18758 10.32155 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.001926 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.784975 B =14531.221005 C =16779.572671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.307 6.307 3 C 0.054 3.946 4 C -0.128 4.128 5 C -0.150 4.150 6 C 0.194 3.806 7 N -0.327 5.327 8 N -0.531 5.531 9 C 0.594 3.406 10 S -0.628 6.628 11 N -0.613 5.613 12 C 0.125 3.875 13 C -0.122 4.122 14 C -0.115 4.115 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.074 4.074 18 C -0.036 4.036 19 C -0.215 4.215 20 C 0.161 3.839 21 O -0.183 6.183 22 C -0.387 4.387 23 H 0.113 0.887 24 C 0.068 3.932 25 N -0.859 5.859 26 Si 0.905 3.095 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.252 1.252 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.413 0.587 36 H 0.421 0.579 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 13.355 0.030 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.009 3.991 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.011 4.011 7 N -0.136 5.136 8 N -0.251 5.251 9 C 0.235 3.765 10 S -0.498 6.498 11 N -0.237 5.237 12 C 0.032 3.968 13 C -0.143 4.143 14 C -0.134 4.134 15 C -0.136 4.136 16 C -0.133 4.133 17 C -0.095 4.095 18 C -0.057 4.057 19 C -0.234 4.234 20 C 0.104 3.896 21 O -0.084 6.084 22 C -0.461 4.461 23 H 0.130 0.870 24 C -0.139 4.139 25 N -0.493 5.493 26 Si 0.730 3.270 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.176 1.176 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.257 0.743 36 H 0.262 0.738 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.140 0.860 43 H 0.163 0.837 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.874 14.205 0.042 16.749 hybrid contribution -0.971 -2.009 -0.185 2.239 sum -9.846 12.196 -0.144 15.675 Atomic orbital electron populations 1.22951 0.79785 1.03333 1.00600 1.86200 1.19941 1.26156 1.89805 1.17942 0.89197 0.84592 1.07413 1.20670 0.98670 0.90444 1.05214 1.17465 0.92510 0.88765 1.16797 1.24420 0.97651 0.90121 0.88936 1.74792 1.23211 0.92937 1.22669 1.46216 1.08687 1.01402 1.68795 1.22076 0.86028 0.88814 0.79599 1.93560 1.62818 1.18732 1.74718 1.42184 1.03552 1.10079 1.67925 1.17499 0.95146 0.85753 0.98412 1.20918 0.96525 0.98128 0.98747 1.20880 1.00206 0.93003 0.99361 1.21201 0.96581 0.99304 0.96550 1.20971 0.95608 0.96644 1.00074 1.21371 0.98622 0.93259 0.96296 1.20906 0.92097 0.97814 0.94867 1.20992 1.01413 0.90390 1.10646 1.18631 0.87733 0.87034 0.96170 1.83609 1.20628 1.27691 1.76460 1.20936 0.77011 0.97355 1.50829 0.86971 1.24553 0.94566 0.99938 0.94836 1.69646 1.03217 1.32329 1.44128 0.86154 0.80475 0.81218 0.79188 1.19511 1.20478 1.17598 0.88844 0.93213 0.93235 0.85521 0.86595 0.74322 0.73808 0.85697 0.85595 0.85967 0.85616 0.83962 0.86041 0.83706 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -5.30 10.28 -34.19 -0.35 -5.66 16 3 C 0.05 0.95 6.70 -39.12 -0.26 0.68 16 4 C -0.13 -1.76 8.77 -39.04 -0.34 -2.11 16 5 C -0.15 -2.03 5.87 -105.02 -0.62 -2.65 16 6 C 0.19 2.07 10.74 -14.68 -0.16 1.91 16 7 N -0.33 -3.71 9.47 32.14 0.30 -3.41 16 8 N -0.53 -5.81 6.26 29.96 0.19 -5.63 16 9 C 0.59 7.52 7.74 -86.92 -0.67 6.85 16 10 S -0.63 -9.60 26.55 -107.50 -2.85 -12.45 16 11 N -0.61 -7.08 5.28 -11.40 -0.06 -7.14 16 12 C 0.13 1.45 5.93 -83.71 -0.50 0.96 16 13 C -0.12 -1.23 9.97 -39.39 -0.39 -1.62 16 14 C -0.12 -1.03 10.04 -39.61 -0.40 -1.42 16 15 C -0.12 -1.03 10.04 -39.55 -0.40 -1.42 16 16 C -0.11 -1.12 10.04 -39.61 -0.40 -1.51 16 17 C -0.07 -0.87 7.85 -39.39 -0.31 -1.17 16 18 C -0.04 -0.55 9.57 -39.16 -0.37 -0.92 16 19 C -0.21 -3.96 9.14 -39.48 -0.36 -4.33 16 20 C 0.16 3.31 6.67 -38.83 -0.26 3.05 16 21 O -0.18 -4.41 8.36 -14.31 -0.12 -4.53 16 22 C -0.39 -9.87 9.94 30.87 0.31 -9.56 16 23 H 0.11 2.87 5.42 -52.49 -0.28 2.58 16 24 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16 25 N -0.86 -22.77 13.96 55.48 0.77 -22.00 16 26 Si 0.91 20.10 28.62 -169.99 -4.86 15.24 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.05 0.46 7.66 -51.92 -0.40 0.06 16 33 H 0.13 1.29 6.28 -52.49 -0.33 0.96 16 34 H 0.12 0.86 8.02 -52.48 -0.42 0.44 16 35 H 0.41 3.84 8.63 -182.59 -1.58 2.26 16 36 H 0.42 4.48 7.88 -40.82 -0.32 4.15 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.83 6.18 -47.79 -0.30 1.54 16 42 H 0.12 1.65 7.54 -52.48 -0.40 1.25 16 43 H 0.15 2.79 5.62 -52.48 -0.29 2.50 16 44 H 0.29 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -30.22 393.99 -11.24 -41.47 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.96 Total: 8.49 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.24 Total: -10.32 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 1.21 Total: -38.17 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.47 Total: -10.19 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.86 Total: 15.24 kcal Atomic # 16 Polarization: -9.60 SS G_CDS: -2.85 Total: -12.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.22 -11.24 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045921136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.386 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds