Wall clock time and date at job start Tue Mar 31 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31651 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48506 * 109.46907 * 240.00209 * 3 2 1 5 5 H 1.48501 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.46852 * 120.00404 * 3 2 1 7 7 C 1.38692 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99541 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.76203 * 99.99710 * 174.89692 * 9 7 2 11 11 C 1.38997 * 120.12492 * 6.86727 * 10 9 7 12 12 C 1.38079 * 119.97715 * 179.97438 * 11 10 9 13 13 C 1.38397 * 120.23036 * 0.02562 * 12 11 10 14 14 C 1.38219 * 120.24812 * 359.97438 * 13 12 11 15 15 C 1.38685 * 120.02267 * 359.73935 * 14 13 12 16 16 N 1.39926 * 120.11636 * 180.25169 * 15 14 13 17 17 C 1.34782 * 120.00337 * 34.42860 * 16 15 14 18 18 O 1.21291 * 119.99603 * 355.95639 * 17 16 15 19 19 C 1.50693 * 120.00312 * 175.95852 * 17 16 15 20 20 N 1.46497 * 109.47223 * 179.97438 * 19 17 16 21 21 C 1.39040 * 120.00281 * 179.97438 * 20 19 17 22 22 C 1.39221 * 119.93081 * 359.72898 * 21 20 19 23 23 C 1.37611 * 120.06759 * 179.71709 * 22 21 20 24 24 C 1.39794 * 119.93159 * 0.57555 * 23 22 21 25 25 C 1.47521 * 120.06925 * 179.67329 * 24 23 22 26 26 N 1.34776 * 119.99851 * 0.02726 * 25 24 23 27 27 O 1.21597 * 120.00093 * 180.02562 * 25 24 23 28 28 C 1.39793 * 119.86146 * 359.69995 * 24 23 22 29 29 C 1.37606 * 119.93230 * 359.97438 * 28 24 23 30 30 H 0.97007 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.01103 * 359.95031 * 11 10 9 32 32 H 1.08000 * 119.88929 * 179.97438 * 12 11 10 33 33 H 1.08003 * 119.87270 * 179.97438 * 13 12 11 34 34 H 1.08005 * 119.99138 * 180.02562 * 14 13 12 35 35 H 0.96998 * 120.00370 * 214.41967 * 16 15 14 36 36 H 1.08996 * 109.47130 * 299.99859 * 19 17 16 37 37 H 1.09000 * 109.47276 * 59.99934 * 19 17 16 38 38 H 0.97000 * 120.00169 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.96458 * 0.02562 * 22 21 20 40 40 H 1.08000 * 120.03419 * 180.26776 * 23 22 21 41 41 H 0.97006 * 120.00404 * 359.97438 * 26 25 24 42 42 H 0.97000 * 120.00098 * 180.02562 * 26 25 24 43 43 H 1.08006 * 120.03137 * 179.97438 * 28 24 23 44 44 H 1.07999 * 119.96722 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 3.1042 1.6964 -1.2126 5 1 1.2855 2.7465 0.0006 6 1 3.1043 1.6963 1.2124 7 6 2.0099 -1.2011 -0.0005 8 1 3.0899 -1.2011 -0.0001 9 16 1.1289 -2.7270 -0.0005 10 6 2.4726 -3.8561 -0.1557 11 6 3.7823 -3.3948 -0.0924 12 6 4.8330 -4.2824 -0.2138 13 6 4.5874 -5.6318 -0.3991 14 6 3.2888 -6.1008 -0.4633 15 6 2.2256 -5.2193 -0.3367 16 7 0.9102 -5.6926 -0.3962 17 6 0.6078 -6.9073 0.1034 18 8 1.4874 -7.6204 0.5380 19 6 -0.8231 -7.3795 0.1221 20 7 -0.8874 -8.7202 0.7090 21 6 -2.1119 -9.3669 0.8332 22 6 -3.2770 -8.7365 0.4047 23 6 -4.4898 -9.3762 0.5210 24 6 -4.5527 -10.6555 1.0812 25 6 -5.8522 -11.3411 1.2140 26 7 -6.9802 -10.7344 0.7945 27 8 -5.9056 -12.4536 1.7019 28 6 -3.3818 -11.2834 1.5159 29 6 -2.1713 -10.6412 1.3907 30 1 -0.4851 0.8401 0.0004 31 1 3.9780 -2.3425 0.0512 32 1 5.8500 -3.9224 -0.1649 33 1 5.4136 -6.3209 -0.4937 34 1 3.1019 -7.1547 -0.6076 35 1 0.2159 -5.1466 -0.7970 36 1 -1.4246 -6.6927 0.7175 37 1 -1.2089 -7.4105 -0.8969 38 1 -0.0755 -9.1569 1.0109 39 1 -3.2282 -7.7465 -0.0241 40 1 -5.3927 -8.8885 0.1844 41 1 -6.9377 -9.8468 0.4055 42 1 -7.8346 -11.1851 0.8821 43 1 -3.4274 -12.2715 1.9495 44 1 -1.2663 -11.1260 1.7260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046169976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:10 Heat of formation + Delta-G solvation = -16.557390 kcal Electronic energy + Delta-G solvation = -28556.031654 eV Core-core repulsion = 24371.101292 eV Total energy + Delta-G solvation = -4184.930361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 371.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57655 -40.14522 -38.81052 -37.91768 -35.51586 -34.59237 -33.99568 -32.85149 -31.25627 -30.64137 -30.42983 -29.15501 -26.94642 -25.96906 -23.52443 -23.16471 -22.45594 -21.91961 -20.64353 -20.23256 -18.68010 -18.50130 -17.87325 -17.21272 -16.91727 -16.31574 -16.20341 -15.91666 -15.65565 -15.26642 -15.17155 -14.91009 -14.44468 -14.36580 -14.11205 -13.94066 -13.68783 -13.63398 -13.35744 -13.07417 -13.03141 -12.69522 -12.60429 -12.34686 -11.79889 -11.48231 -11.28144 -11.24066 -11.17322 -10.50737 -10.47577 -10.26740 -10.24417 -10.02799 -9.97034 -9.68888 -9.60850 -9.28685 -8.89326 -8.78108 -7.88165 -7.77199 -6.66173 -6.62245 -4.34611 0.80876 1.18172 1.69392 1.95921 2.53687 2.71857 2.73614 2.97072 3.05330 3.09588 3.22018 3.31594 3.41427 3.72119 3.89283 4.30419 4.46449 4.49900 4.65272 4.71672 4.81207 4.93393 4.97079 5.02491 5.05470 5.20014 5.35385 5.51070 5.55703 5.69813 5.76022 5.90571 5.99722 6.02384 6.09226 6.15280 6.42094 6.42980 6.53038 6.69732 6.74552 6.90088 6.97438 7.09199 7.09871 7.33913 7.36347 7.52390 7.56012 8.03350 8.04483 8.09612 8.86506 10.44740 Molecular weight = 371.11amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.001797 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.044798 B =15576.621888 C =17715.980137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.078 3.922 3 Si 0.925 3.075 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.095 0.905 9 S 0.038 5.962 10 C -0.100 4.100 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.150 4.150 14 C -0.099 4.099 15 C 0.115 3.885 16 N -0.650 5.650 17 C 0.508 3.492 18 O -0.527 6.527 19 C 0.101 3.899 20 N -0.722 5.722 21 C 0.253 3.747 22 C -0.212 4.212 23 C -0.031 4.031 24 C -0.212 4.212 25 C 0.570 3.430 26 N -0.856 5.856 27 O -0.553 6.553 28 C -0.006 4.006 29 C -0.205 4.205 30 H 0.275 0.725 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.413 0.587 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.415 0.585 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.400 0.600 42 H 0.402 0.598 43 H 0.134 0.866 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -14.408 -2.029 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.132 4.132 3 Si 0.750 3.250 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.695 4.695 8 H 0.112 0.888 9 S 0.293 5.707 10 C -0.218 4.218 11 C -0.157 4.157 12 C -0.131 4.131 13 C -0.174 4.174 14 C -0.121 4.121 15 C 0.013 3.987 16 N -0.294 5.294 17 C 0.294 3.706 18 O -0.403 6.403 19 C -0.027 4.027 20 N -0.352 5.352 21 C 0.146 3.854 22 C -0.234 4.234 23 C -0.051 4.051 24 C -0.218 4.218 25 C 0.358 3.642 26 N -0.420 5.420 27 O -0.432 6.432 28 C -0.025 4.025 29 C -0.228 4.228 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.251 0.749 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.254 0.746 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.229 0.771 42 H 0.232 0.768 43 H 0.152 0.848 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.060 -15.266 -1.356 17.316 hybrid contribution 1.485 1.842 -0.367 2.394 sum -6.575 -13.424 -1.722 15.047 Atomic orbital electron populations 1.69974 1.06077 1.28512 1.45265 1.25091 0.95186 0.99662 0.93262 0.86101 0.79341 0.80239 0.79352 1.19440 1.20531 1.19455 1.23233 0.95917 0.90487 1.59905 0.88764 1.83083 1.05918 0.97651 1.84064 1.22551 1.00744 0.96177 1.02291 1.21310 0.90967 1.00772 1.02614 1.21003 0.98332 0.93386 1.00381 1.20763 0.95842 0.95383 1.05405 1.20947 0.91459 0.99312 1.00343 1.17090 0.83124 0.91480 1.06967 1.43205 1.09873 1.17993 1.58375 1.20424 0.90740 0.81779 0.77630 1.90681 1.48724 1.54417 1.46525 1.21134 0.94630 0.85975 1.01001 1.44398 1.07371 1.16511 1.66908 1.18010 0.85640 0.90987 0.90793 1.20613 0.91234 1.01893 1.09704 1.20969 0.97322 0.92781 0.94003 1.19522 0.93402 0.97067 1.11799 1.18230 0.84426 0.85007 0.76517 1.43771 1.09570 1.22238 1.66409 1.90801 1.87296 1.19827 1.45271 1.20942 0.90284 0.98763 0.92558 1.20571 0.98761 0.94924 1.08548 0.91540 0.84323 0.86959 0.86897 0.85254 0.74935 0.88122 0.88475 0.74637 0.85196 0.85796 0.77074 0.76764 0.84806 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.83 13.22 55.49 0.73 -22.09 16 2 C 0.08 1.99 5.49 -17.46 -0.10 1.89 16 3 Si 0.92 19.45 29.55 -169.99 -5.02 14.43 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.55 -13.86 9.07 30.90 0.28 -13.58 16 8 H 0.09 2.29 4.83 -52.49 -0.25 2.03 16 9 S 0.04 0.87 20.53 -107.50 -2.21 -1.34 16 10 C -0.10 -2.05 6.12 -38.75 -0.24 -2.29 16 11 C -0.13 -2.58 9.26 -39.36 -0.36 -2.95 16 12 C -0.11 -1.86 10.03 -39.58 -0.40 -2.26 16 13 C -0.15 -2.43 10.04 -39.53 -0.40 -2.83 16 14 C -0.10 -1.71 8.70 -39.42 -0.34 -2.05 16 15 C 0.12 2.08 6.32 -83.45 -0.53 1.55 16 16 N -0.65 -9.57 5.03 -9.71 -0.05 -9.62 16 17 C 0.51 6.73 7.74 -10.99 -0.09 6.65 16 18 O -0.53 -8.40 13.08 5.55 0.07 -8.32 16 19 C 0.10 0.93 5.38 -5.20 -0.03 0.90 16 20 N -0.72 -7.00 5.68 -59.82 -0.34 -7.34 16 21 C 0.25 2.39 6.65 -83.86 -0.56 1.83 16 22 C -0.21 -1.75 9.28 -39.45 -0.37 -2.12 16 23 C -0.03 -0.24 9.53 -39.23 -0.37 -0.61 16 24 C -0.21 -2.04 5.88 -104.95 -0.62 -2.66 16 25 C 0.57 5.87 8.03 -12.48 -0.10 5.77 16 26 N -0.86 -5.15 8.82 30.45 0.27 -4.88 16 27 O -0.55 -7.87 17.17 5.28 0.09 -7.78 16 28 C -0.01 -0.06 9.58 -39.23 -0.38 -0.43 16 29 C -0.21 -1.93 9.87 -39.45 -0.39 -2.32 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.14 2.84 4.95 -52.49 -0.26 2.58 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.13 2.15 6.19 -52.48 -0.32 1.83 16 35 H 0.41 5.46 7.95 -40.82 -0.32 5.13 16 36 H 0.10 0.83 7.92 -51.93 -0.41 0.41 16 37 H 0.10 0.68 7.94 -51.93 -0.41 0.27 16 38 H 0.41 4.32 7.44 -40.82 -0.30 4.01 16 39 H 0.13 0.86 6.70 -52.49 -0.35 0.51 16 40 H 0.12 0.55 6.39 -52.49 -0.34 0.21 16 41 H 0.40 1.31 6.85 -40.82 -0.28 1.03 16 42 H 0.40 1.94 8.93 -40.82 -0.36 1.57 16 43 H 0.13 1.32 7.64 -52.48 -0.40 0.92 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -32.51 387.58 -10.01 -42.52 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -4.43 Total: 14.07 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -4.97 Total: -15.49 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.61 Total: -43.93 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.16 Total: -16.11 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.21 Total: -1.34 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.51 -10.01 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046169976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.965 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds