Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 C 1.50696 * 109.46953 * 179.97438 * 5 4 2 7 7 C 1.38242 * 119.99527 * 269.72120 * 6 5 4 8 8 C 1.38219 * 120.01337 * 179.76906 * 7 6 5 9 9 C 1.38314 * 119.98728 * 0.50746 * 8 7 6 10 10 Br 1.89102 * 120.00987 * 179.72496 * 9 8 7 11 11 C 1.38327 * 119.98336 * 359.74964 * 9 8 7 12 12 C 1.38216 * 119.98838 * 359.97438 * 11 9 8 13 13 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 14 14 C 1.34768 * 120.00056 * 275.00296 * 13 2 1 15 15 O 1.21278 * 120.00079 * 359.97438 * 14 13 2 16 16 C 1.50705 * 120.00177 * 179.97438 * 14 13 2 17 17 S 1.81002 * 109.47331 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99778 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00579 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99871 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99555 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99966 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47455 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47327 * 120.00496 * 22 20 18 25 25 H 1.48499 * 109.47076 * 240.00107 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 30 30 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 31 31 H 1.08994 * 109.47518 * 299.99758 * 5 4 2 32 32 H 1.09001 * 109.47018 * 59.99856 * 5 4 2 33 33 H 1.08003 * 119.99145 * 0.02979 * 7 6 5 34 34 H 1.08000 * 120.00310 * 180.23718 * 8 7 6 35 35 H 1.08002 * 120.00362 * 179.97438 * 11 9 8 36 36 H 1.07997 * 119.99361 * 179.97438 * 12 11 9 37 37 H 0.97001 * 119.99547 * 95.00125 * 13 2 1 38 38 H 1.08996 * 109.47135 * 300.00342 * 16 14 13 39 39 H 1.09000 * 109.46519 * 60.00292 * 16 14 13 40 40 H 0.97000 * 119.99541 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0672 -1.3240 -2.5440 7 6 4.4014 -2.6639 -2.4799 8 6 4.8577 -3.3174 -3.6091 9 6 4.9898 -2.6280 -4.8009 10 35 5.6213 -3.5196 -6.3443 11 6 4.6603 -1.2860 -4.8634 12 6 4.1987 -0.6347 -3.7350 13 7 2.0184 -0.6906 1.1961 14 6 2.1471 -0.0184 2.3570 15 8 1.8590 1.1585 2.4115 16 6 2.6490 -0.7289 3.5877 17 16 2.7107 0.4343 4.9731 18 6 3.3139 -0.6310 6.2403 19 1 3.5232 -1.6675 6.0203 20 6 3.5210 -0.1379 7.5212 21 7 3.2663 1.1254 7.7891 22 14 4.1611 -1.2671 8.8644 23 1 4.3659 -2.6294 8.3101 24 1 5.4514 -0.7424 9.3790 25 1 3.1742 -1.3274 9.9724 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.7517 -1.7714 -1.2057 30 1 1.6054 -0.2616 -2.1371 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4261 33 1 4.3020 -3.2011 -1.5482 34 1 5.1151 -4.3651 -3.5598 35 1 4.7637 -0.7472 -5.7937 36 1 3.9418 0.4132 -3.7836 37 1 2.2491 -1.6318 1.1525 38 1 1.9762 -1.5508 3.8325 39 1 3.6481 -1.1213 3.3984 40 1 3.4107 1.4699 8.6843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048943090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = -32.806299 kcal Electronic energy + Delta-G solvation = -21564.397755 eV Core-core repulsion = 18129.609501 eV Total energy + Delta-G solvation = -3434.788253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 371.030 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97264 -39.30651 -36.45063 -33.87974 -32.43890 -31.89933 -31.47512 -30.79708 -28.62611 -28.18629 -25.49623 -24.31789 -23.25208 -21.60837 -21.08413 -20.31660 -17.85285 -17.04760 -16.55408 -16.16521 -15.85731 -15.51932 -14.93784 -14.81543 -14.36502 -14.10250 -13.95886 -13.87599 -13.54400 -13.39616 -13.19404 -12.80540 -12.65684 -12.19839 -12.02949 -11.89711 -11.82212 -11.37524 -11.19131 -11.08255 -11.03707 -11.01535 -10.84598 -10.75273 -10.68473 -9.81265 -9.44669 -9.37986 -9.09010 -9.00892 -8.83296 -8.23995 -6.50824 -6.22909 -3.93214 0.66584 0.89144 1.23227 3.03658 3.09927 3.18182 3.20637 3.27664 3.32342 3.72127 4.19377 4.24874 4.32090 4.48657 4.71966 4.78188 4.84897 4.93861 5.00858 5.12425 5.15913 5.25355 5.29564 5.43555 5.45691 5.48373 5.58869 5.62735 5.69850 5.78641 5.82723 5.86987 5.87978 6.03746 6.12910 6.18519 6.20704 6.40738 6.68205 7.58868 7.72030 8.34347 8.62487 9.22671 10.84562 Molecular weight = 371.03amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.001545 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.022172 B =18121.593621 C =19369.879106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.118 4.118 5 C -0.087 4.087 6 C -0.060 4.060 7 C -0.112 4.112 8 C -0.088 4.088 9 C -0.098 4.098 10 Br -0.057 7.057 11 C -0.089 4.089 12 C -0.112 4.112 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -10.085 -31.005 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.156 4.156 5 C -0.124 4.124 6 C -0.060 4.060 7 C -0.130 4.130 8 C -0.108 4.108 9 C -0.177 4.177 10 Br 0.028 6.972 11 C -0.109 4.109 12 C -0.131 4.131 13 N -0.389 5.389 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.230 0.770 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.676 -8.298 -31.367 32.489 hybrid contribution 0.741 -2.408 1.082 2.742 sum 2.417 -10.706 -30.284 32.211 Atomic orbital electron populations 1.22181 0.95397 1.02007 1.02654 1.20904 0.93958 0.97696 0.83698 0.89325 1.21876 0.94413 1.01514 0.97807 1.20720 0.95747 1.01037 0.94936 1.20127 0.96412 0.93986 0.95466 1.21130 0.99248 0.94258 0.98398 1.21122 0.98294 1.00164 0.91227 1.21780 1.07082 0.95795 0.93031 1.96726 1.87274 1.77912 1.35294 1.21114 0.97855 0.92543 0.99355 1.21117 0.99741 1.00373 0.91867 1.46119 1.69363 1.13813 1.09598 1.20290 0.76814 0.87230 0.83778 1.90697 1.48298 1.15786 1.84390 1.23539 1.03607 1.04852 0.98481 1.85398 1.86307 1.12883 0.98823 1.22910 1.50844 0.98172 0.96397 0.90899 1.25000 0.95122 0.95545 0.97979 1.70031 1.45600 1.13195 1.21433 0.86115 0.78525 0.80122 0.80716 1.19628 1.20564 1.20579 0.91619 0.92631 0.91966 0.91160 0.90288 0.90247 0.90105 0.84954 0.85050 0.85089 0.84998 0.77015 0.89309 0.89322 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.14 1.48 2.57 -67.93 -0.17 1.31 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C -0.12 -0.85 4.74 -26.73 -0.13 -0.98 16 5 C -0.09 -0.66 5.23 -27.89 -0.15 -0.80 16 6 C -0.06 -0.45 5.13 -104.62 -0.54 -0.99 16 7 C -0.11 -0.82 9.70 -39.59 -0.38 -1.21 16 8 C -0.09 -0.67 9.79 -39.56 -0.39 -1.06 16 9 C -0.10 -0.78 6.22 -39.52 -0.25 -1.03 16 10 Br -0.06 -0.44 33.70 -68.01 -2.29 -2.73 16 11 C -0.09 -0.66 9.79 -39.56 -0.39 -1.05 16 12 C -0.11 -0.81 9.70 -39.59 -0.38 -1.19 16 13 N -0.73 -8.91 4.53 -53.81 -0.24 -9.16 16 14 C 0.53 9.45 7.81 -10.99 -0.09 9.37 16 15 O -0.52 -11.33 15.52 5.56 0.09 -11.25 16 16 C -0.15 -3.02 6.16 36.01 0.22 -2.79 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.53 -15.12 9.50 30.94 0.29 -14.82 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.40 3.69 8.60 -40.82 -0.35 3.34 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -33.74 377.04 -11.11 -44.85 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.76 Total: 0.07 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.09 Total: -14.61 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.49 Total: -34.44 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.29 Total: -2.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.74 -11.11 -44.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048943090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.047 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds