Wall clock time and date at job start Tue Mar 31 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31661 * 1 3 3 Si 1.86798 * 119.99750 * 2 1 4 4 H 1.48503 * 109.47138 * 240.00271 * 3 2 1 5 5 H 1.48500 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47363 * 119.99756 * 3 2 1 7 7 C 1.38702 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99861 * 162.03120 * 7 2 1 9 9 N 1.36701 * 120.00052 * 342.03194 * 7 2 1 10 10 C 1.39511 * 121.16313 * 148.00814 * 9 7 2 11 11 C 1.41766 * 118.83887 * 329.33593 * 10 9 7 12 12 O 1.21812 * 119.99456 * 309.05162 * 11 10 9 13 13 C 1.47891 * 120.00061 * 129.05389 * 11 10 9 14 14 C 1.39606 * 120.14646 * 352.89155 * 13 11 10 15 15 C 1.37948 * 119.85008 * 179.74190 * 14 13 11 16 16 C 1.38379 * 120.14489 * 0.51327 * 15 14 13 17 17 C 1.38378 * 120.29533 * 359.75570 * 16 15 14 18 18 C 1.37935 * 120.14953 * 359.97438 * 17 16 15 19 19 C 1.37050 * 122.32587 * 149.61046 * 10 9 7 20 20 O 1.35291 * 118.00040 * 179.70076 * 19 10 9 21 21 C 1.46653 * 124.00303 * 359.72091 * 19 10 9 22 22 C 1.39997 * 120.39869 * 196.21451 * 21 19 10 23 23 C 1.37832 * 119.82070 * 179.89675 * 22 21 19 24 24 C 1.38436 * 120.51977 * 0.03146 * 23 22 21 25 25 C 1.38624 * 120.17013 * 359.97438 * 24 23 22 26 26 C 1.37292 * 119.79976 * 359.97438 * 25 24 23 27 27 S 1.66648 * 121.16326 * 328.04004 * 9 7 2 28 28 O 1.42097 * 106.80183 * 332.29327 * 27 9 7 29 29 O 1.42096 * 106.80875 * 106.22580 * 27 9 7 30 30 H 0.96992 * 120.00143 * 355.06372 * 1 2 3 31 31 H 1.07997 * 120.07392 * 359.97438 * 14 13 11 32 32 H 1.07995 * 119.93132 * 180.27031 * 15 14 13 33 33 H 1.08001 * 119.84986 * 179.74379 * 16 15 14 34 34 H 1.07999 * 119.92326 * 180.02562 * 17 16 15 35 35 H 1.08003 * 120.07896 * 179.97438 * 18 17 16 36 36 H 0.96702 * 113.99477 * 185.18901 * 20 19 10 37 37 H 1.07999 * 120.08663 * 359.87265 * 22 21 19 38 38 H 1.07995 * 119.73604 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.91432 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.09873 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 3.1042 1.6965 -1.2126 5 1 1.2855 2.7465 -0.0006 6 1 3.1042 1.6965 1.2125 7 6 2.0102 -1.2012 0.0005 8 1 3.0507 -1.2240 -0.2880 9 7 1.3767 -2.3560 0.3663 10 6 1.7287 -3.5824 -0.1981 11 6 2.2157 -3.6079 -1.5293 12 8 1.5939 -3.0501 -2.4159 13 6 3.4783 -4.3118 -1.8414 14 6 4.2687 -4.8239 -0.8109 15 6 5.4427 -5.4841 -1.1093 16 6 5.8427 -5.6298 -2.4260 17 6 5.0667 -5.1196 -3.4518 18 6 3.8878 -4.4623 -3.1676 19 6 1.6152 -4.7639 0.4869 20 8 1.9760 -5.9031 -0.1474 21 6 1.1261 -4.8689 1.8655 22 6 1.3499 -6.0333 2.6098 23 6 0.8869 -6.1184 3.9052 24 6 0.2006 -5.0609 4.4774 25 6 -0.0270 -3.9030 3.7500 26 6 0.4307 -3.8071 2.4592 27 16 0.1565 -2.3481 1.5013 28 8 0.4009 -1.2422 2.3593 29 8 -1.0620 -2.5398 0.7959 30 1 -0.4850 0.8368 0.0723 31 1 3.9599 -4.7069 0.2173 32 1 6.0529 -5.8846 -0.3134 33 1 6.7647 -6.1439 -2.6539 34 1 5.3843 -5.2372 -4.4773 35 1 3.2832 -4.0642 -3.9692 36 1 1.7990 -6.7080 0.3585 37 1 1.8837 -6.8628 2.1700 38 1 1.0606 -7.0171 4.4783 39 1 -0.1583 -5.1383 5.4931 40 1 -0.5621 -3.0786 4.1976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049964128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:50 Heat of formation + Delta-G solvation = -57.055248 kcal Electronic energy + Delta-G solvation = -32353.427355 eV Core-core repulsion = 27998.615029 eV Total energy + Delta-G solvation = -4354.812326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 371.071 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.25719 -39.05183 -37.95490 -37.15227 -36.08535 -35.77785 -34.50614 -33.05472 -31.27397 -31.05093 -30.80675 -30.70003 -28.56218 -25.26985 -24.68167 -22.89037 -22.72321 -22.07435 -21.02994 -19.48034 -19.28419 -18.42562 -17.39309 -16.89387 -16.48447 -16.00752 -15.72503 -15.29533 -15.07621 -14.93489 -14.66356 -14.41512 -14.20104 -14.08448 -13.94725 -13.74585 -13.57417 -13.22448 -13.02561 -12.44994 -12.35906 -12.26416 -12.15053 -12.04848 -11.74159 -11.42870 -11.38342 -11.17076 -10.97637 -10.82397 -10.70920 -10.66033 -10.55913 -10.25278 -9.80002 -9.30339 -9.15619 -9.01072 -8.85506 -8.74008 -8.64836 -7.13583 -7.02312 -4.47036 0.70852 1.15107 1.31718 1.46532 1.62419 2.35971 3.02820 3.03312 3.10184 3.21505 3.62304 3.87671 3.92778 4.19063 4.41772 4.47668 4.58349 4.85834 4.94560 5.05616 5.07671 5.09380 5.11059 5.27315 5.41057 5.51358 5.62421 5.69499 5.87447 5.95348 6.02584 6.03022 6.09159 6.18545 6.25743 6.43841 6.48967 6.56485 6.60050 6.62779 6.70332 6.88302 6.94035 7.10582 7.12411 7.63188 7.92191 8.07832 8.31264 8.58851 10.00896 Molecular weight = 371.07amu Principal moments of inertia in cm(-1) A = 0.007857 B = 0.006106 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.964943 B = 4584.427890 C = 7197.454516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.262 4.262 8 H 0.110 0.890 9 N -0.705 5.705 10 C 0.073 3.927 11 C 0.458 3.542 12 O -0.423 6.423 13 C -0.136 4.136 14 C -0.044 4.044 15 C -0.141 4.141 16 C -0.099 4.099 17 C -0.141 4.141 18 C -0.066 4.066 19 C -0.023 4.023 20 O -0.468 6.468 21 C 0.030 3.970 22 C -0.154 4.154 23 C -0.072 4.072 24 C -0.162 4.162 25 C -0.012 4.012 26 C -0.676 4.676 27 S 2.624 3.376 28 O -0.963 6.963 29 O -0.938 6.938 30 H 0.301 0.699 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.384 0.616 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.721 -11.083 2.328 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.399 4.399 8 H 0.128 0.872 9 N -0.508 5.508 10 C -0.038 4.038 11 C 0.334 3.666 12 O -0.296 6.296 13 C -0.137 4.137 14 C -0.062 4.062 15 C -0.159 4.159 16 C -0.118 4.118 17 C -0.159 4.159 18 C -0.085 4.085 19 C -0.080 4.080 20 O -0.271 6.271 21 C 0.028 3.972 22 C -0.173 4.173 23 C -0.090 4.090 24 C -0.182 4.182 25 C -0.031 4.031 26 C -0.759 4.759 27 S 2.723 3.277 28 O -0.951 6.951 29 O -0.927 6.927 30 H 0.112 0.888 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.236 0.764 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.584 -9.517 1.540 12.266 hybrid contribution 0.388 -0.567 0.975 1.193 sum 7.972 -10.084 2.516 13.098 Atomic orbital electron populations 1.69615 1.06570 1.32369 1.37163 1.25934 0.95932 1.02115 0.93744 0.85511 0.79096 0.77824 0.79782 1.18753 1.19644 1.18319 1.19612 0.96174 0.82496 1.41648 0.87228 1.51343 1.50538 1.07169 1.41712 1.18126 1.07230 0.84851 0.93561 1.18719 0.83954 0.76647 0.87302 1.90679 1.55734 1.34777 1.48392 1.20431 0.96923 1.02167 0.94205 1.21468 0.92398 0.92759 0.99570 1.21069 0.97211 1.01124 0.96479 1.21268 0.99040 0.98404 0.93048 1.21021 0.95421 1.00257 0.99183 1.21330 0.95635 0.95581 0.95918 1.18127 1.14164 0.86722 0.88973 1.84815 1.82231 1.14096 1.45959 1.18387 0.93899 0.93264 0.91692 1.20989 1.03716 0.97178 0.95422 1.21025 0.95385 0.97999 0.94613 1.21209 1.02467 0.94526 1.00022 1.20494 0.93851 0.97260 0.91484 1.31707 1.13071 1.20268 1.10829 1.06711 0.75778 0.72268 0.72993 1.93381 1.84305 1.50633 1.66757 1.93509 1.42057 1.85758 1.71418 0.88781 0.84953 0.86021 0.86306 0.86006 0.85230 0.76417 0.85634 0.85884 0.85765 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.06 10.94 55.49 0.61 -22.45 16 2 C 0.04 0.95 4.42 -17.45 -0.08 0.87 16 3 Si 0.96 19.90 29.59 -169.99 -5.03 14.87 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.26 -6.76 8.45 -15.21 -0.13 -6.89 16 8 H 0.11 2.58 7.88 -52.49 -0.41 2.16 16 9 N -0.71 -18.09 3.10 -9.42 -0.03 -18.12 16 10 C 0.07 1.67 5.28 -83.45 -0.44 1.23 16 11 C 0.46 10.13 5.34 -34.28 -0.18 9.94 16 12 O -0.42 -10.59 16.92 5.09 0.09 -10.50 16 13 C -0.14 -2.42 5.22 -104.92 -0.55 -2.96 16 14 C -0.04 -0.67 7.68 -39.18 -0.30 -0.97 16 15 C -0.14 -1.74 10.03 -39.64 -0.40 -2.13 16 16 C -0.10 -1.13 10.04 -39.48 -0.40 -1.53 16 17 C -0.14 -1.75 10.03 -39.64 -0.40 -2.15 16 18 C -0.07 -1.04 9.60 -39.18 -0.38 -1.41 16 19 C -0.02 -0.45 5.40 -36.62 -0.20 -0.65 16 20 O -0.47 -7.28 10.05 -17.57 -0.18 -7.46 16 21 C 0.03 0.57 5.84 -105.13 -0.61 -0.04 16 22 C -0.15 -2.20 9.31 -39.07 -0.36 -2.57 16 23 C -0.07 -0.95 10.01 -39.66 -0.40 -1.35 16 24 C -0.16 -2.39 10.06 -39.37 -0.40 -2.79 16 25 C -0.01 -0.22 9.67 -39.78 -0.38 -0.60 16 26 C -0.68 -14.54 5.91 -39.22 -0.23 -14.77 16 27 S 2.62 68.74 3.92 -107.50 -0.42 68.32 16 28 O -0.96 -26.55 15.82 -57.11 -0.90 -27.45 16 29 O -0.94 -27.37 17.63 -57.11 -1.01 -28.37 16 30 H 0.30 7.78 8.32 -40.82 -0.34 7.44 16 31 H 0.13 2.05 5.96 -52.49 -0.31 1.74 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.13 2.01 7.67 -52.48 -0.40 1.61 16 36 H 0.38 4.16 6.73 45.56 0.31 4.47 16 37 H 0.13 1.27 6.59 -52.49 -0.35 0.93 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 40 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -35.15 353.07 -10.22 -45.38 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -2.84 Total: 9.24 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -5.83 Total: -28.77 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.58 Total: -40.57 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: -2.00 Total: -73.78 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 16 Polarization: 68.74 SS G_CDS: -0.42 Total: 68.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.15 -10.22 -45.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049964128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.679 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds