Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46957 * 2 1 4 4 H 1.09000 * 109.79334 * 54.99330 * 3 2 1 5 5 C 1.52442 * 109.80137 * 175.80547 * 3 2 1 6 6 C 1.39126 * 123.56990 * 287.99917 * 5 3 2 7 7 C 1.32929 * 115.64924 * 179.76282 * 6 5 3 8 8 S 1.75713 * 109.58813 * 0.06979 * 7 6 5 9 9 C 1.34649 * 122.62241 * 107.99546 * 5 3 2 10 10 C 1.51401 * 125.10047 * 0.49548 * 9 5 3 11 11 C 1.53189 * 109.06983 * 341.91814 * 10 9 5 12 12 N 1.46985 * 109.84532 * 294.15806 * 3 2 1 13 13 C 1.34770 * 120.87259 * 105.47164 * 12 3 2 14 14 O 1.21287 * 120.00059 * 359.97438 * 13 12 3 15 15 C 1.50700 * 120.00005 * 180.02562 * 13 12 3 16 16 O 1.42905 * 109.47177 * 179.97438 * 15 13 12 17 17 C 1.35675 * 116.99708 * 179.97438 * 16 15 13 18 18 C 1.39316 * 119.81706 * 359.72459 * 17 16 15 19 19 C 1.36439 * 120.17791 * 179.75853 * 18 17 16 20 20 C 1.40829 * 119.81427 * 0.51548 * 19 18 17 21 21 C 1.41221 * 120.17676 * 179.75907 * 20 19 18 22 22 H 1.08004 * 119.99407 * 204.53256 * 21 20 19 23 23 C 1.39886 * 119.99920 * 24.53576 * 21 20 19 24 24 N 1.30878 * 119.99913 * 17.94127 * 23 21 20 25 25 Si 1.86804 * 119.99919 * 197.93663 * 23 21 20 26 26 H 1.48502 * 109.46882 * 90.00119 * 25 23 21 27 27 H 1.48491 * 109.47375 * 209.99958 * 25 23 21 28 28 H 1.48504 * 109.47060 * 330.00395 * 25 23 21 29 29 C 1.40835 * 119.64339 * 359.74037 * 20 19 18 30 30 C 1.36434 * 119.81011 * 0.02562 * 29 20 19 31 31 H 1.09002 * 109.47461 * 300.00073 * 1 2 3 32 32 H 1.09000 * 109.47016 * 60.00855 * 1 2 3 33 33 H 1.09006 * 109.47115 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47440 * 239.99987 * 2 1 3 35 35 H 1.09000 * 109.47016 * 119.99145 * 2 1 3 36 36 H 1.07992 * 122.17583 * 359.74587 * 6 5 3 37 37 H 1.07999 * 125.20316 * 180.02562 * 7 6 5 38 38 H 1.08995 * 109.53524 * 101.79368 * 10 9 5 39 39 H 1.08999 * 109.53488 * 221.96167 * 10 9 5 40 40 H 1.08999 * 109.62394 * 165.24808 * 11 10 9 41 41 H 1.08998 * 109.62407 * 285.79766 * 11 10 9 42 42 H 1.08997 * 109.47067 * 299.99408 * 15 13 12 43 43 H 1.09000 * 109.47305 * 59.99945 * 15 13 12 44 44 H 1.07997 * 119.91074 * 0.02562 * 18 17 16 45 45 H 1.08005 * 120.08852 * 180.25213 * 19 18 17 46 46 H 0.97005 * 119.99727 * 180.02562 * 24 23 21 47 47 H 1.07999 * 120.09393 * 179.97438 * 29 20 19 48 48 H 1.08003 * 119.90613 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6083 1.9866 0.8401 5 6 3.5608 1.4526 0.1049 6 6 4.2539 1.1265 1.2663 7 6 5.5793 1.1828 1.1803 8 16 6.0441 1.6738 -0.4415 9 6 4.3576 1.7814 -0.9295 10 6 3.8745 2.1881 -2.3056 11 6 2.4192 1.7415 -2.4773 12 7 1.6728 2.1016 -1.2615 13 6 0.6782 3.0100 -1.3032 14 8 0.0726 3.2931 -0.2911 15 6 0.3178 3.6734 -2.6074 16 8 -0.7587 4.5889 -2.3947 17 6 -1.2070 5.2745 -3.4763 18 6 -0.6137 5.0708 -4.7203 19 6 -1.0619 5.7526 -5.8138 20 6 -2.1201 6.6722 -5.6803 21 6 -2.5867 7.3858 -6.8061 22 1 -3.0858 8.3346 -6.6751 23 6 -2.4025 6.8638 -8.0907 24 7 -2.1299 5.5934 -8.2479 25 14 -2.5456 7.9798 -9.5818 26 1 -1.2148 8.5592 -9.8960 27 1 -3.0298 7.1931 -10.7444 28 1 -3.5058 9.0746 -9.2904 29 6 -2.7107 6.8762 -4.4181 30 6 -2.2538 6.1828 -3.3355 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.7482 0.8462 2.1783 37 1 6.2653 0.9614 1.9845 38 1 3.9380 3.2713 -2.4088 39 1 4.4951 1.7124 -3.0650 40 1 1.9808 2.2459 -3.3384 41 1 2.3825 0.6621 -2.6244 42 1 1.1833 4.2128 -2.9921 43 1 0.0122 2.9152 -3.3284 44 1 0.2003 4.3681 -4.8201 45 1 -0.6037 5.5905 -6.7783 46 1 -2.0018 5.2314 -9.1387 47 1 -3.5223 7.5800 -4.3073 48 1 -2.7053 6.3383 -2.3668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053849480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = -17.708964 kcal Electronic energy + Delta-G solvation = -30626.836242 eV Core-core repulsion = 26545.396288 eV Total energy + Delta-G solvation = -4081.439954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 371.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.76634 -39.02141 -38.11821 -36.32730 -35.85729 -34.15795 -33.36572 -31.77744 -29.86357 -29.60710 -29.22824 -27.84918 -26.08325 -24.74357 -24.11258 -22.79382 -22.02935 -21.19200 -20.59366 -19.36436 -18.39439 -17.80694 -17.35772 -17.03634 -16.63593 -16.15925 -15.95410 -15.46768 -15.22426 -14.92281 -14.46644 -14.41890 -13.98663 -13.75209 -13.70630 -13.57527 -13.44884 -13.21698 -12.83666 -12.62126 -12.43046 -12.24815 -12.04942 -11.95065 -11.81855 -11.64637 -11.58194 -11.52812 -11.51119 -11.14271 -11.12211 -11.04792 -10.88684 -10.64376 -10.01791 -9.82088 -9.69340 -9.37034 -9.05192 -8.94834 -8.85500 -8.62630 -7.68974 -7.05436 -6.76082 -4.28166 0.67810 1.29345 1.67325 2.33190 2.55071 2.59779 2.73531 2.94220 3.06817 3.10385 3.19062 3.92930 3.99493 4.26075 4.34391 4.57385 4.58348 4.71973 4.76088 4.81093 4.87442 4.97122 5.02036 5.20757 5.25595 5.33529 5.34119 5.35799 5.40627 5.51507 5.64502 5.66483 5.75228 5.76316 5.88125 5.90798 6.03215 6.13818 6.17950 6.25709 6.35128 6.65506 6.86000 7.03717 7.16589 7.24798 7.37327 7.52877 7.85149 7.96945 8.09964 8.15339 8.39802 8.61015 8.87376 8.95575 10.18770 Molecular weight = 371.13amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.001946 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.771511 B =14385.364327 C =15334.009675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.209 3.791 4 H 0.110 0.890 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.215 4.215 8 S 0.095 5.905 9 C -0.167 4.167 10 C -0.068 4.068 11 C 0.109 3.891 12 N -0.611 5.611 13 C 0.525 3.475 14 O -0.512 6.512 15 C 0.053 3.947 16 O -0.304 6.304 17 C -0.013 4.013 18 C -0.174 4.174 19 C -0.134 4.134 20 C 0.088 3.912 21 C -0.462 4.462 22 H 0.078 0.922 23 C 0.075 3.925 24 N -0.799 5.799 25 Si 0.908 3.092 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.262 1.262 29 C -0.195 4.195 30 C -0.107 4.107 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.122 0.878 46 H 0.279 0.721 47 H 0.101 0.899 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.915 -13.449 11.691 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.104 3.896 4 H 0.128 0.872 5 C -0.129 4.129 6 C -0.150 4.150 7 C -0.350 4.350 8 S 0.362 5.638 9 C -0.284 4.284 10 C -0.108 4.108 11 C -0.016 4.016 12 N -0.347 5.347 13 C 0.312 3.688 14 O -0.385 6.385 15 C -0.026 4.026 16 O -0.219 6.219 17 C -0.056 4.056 18 C -0.193 4.193 19 C -0.154 4.154 20 C 0.085 3.915 21 C -0.491 4.491 22 H 0.096 0.904 23 C -0.142 4.142 24 N -0.426 5.426 25 Si 0.732 3.268 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.186 1.186 29 C -0.214 4.214 30 C -0.126 4.126 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.140 0.860 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.943 -13.173 11.540 24.367 hybrid contribution -0.967 -0.003 -0.262 1.001 sum 15.976 -13.176 11.278 23.581 Atomic orbital electron populations 1.21722 0.94676 1.01435 1.02788 1.21810 0.96784 0.94918 1.02673 1.20030 0.88094 0.93875 0.87647 0.87207 1.19788 0.96133 1.04028 0.92920 1.19899 0.93258 1.02936 0.98926 1.25335 0.99091 1.10112 1.00463 1.84223 1.06084 1.67561 1.05980 1.24659 0.95390 1.08324 1.00047 1.20714 0.96321 1.02424 0.91300 1.21798 0.90534 1.01698 0.87522 1.48038 1.35321 1.42094 1.09219 1.20375 0.79075 0.78467 0.90842 1.90712 1.50585 1.61411 1.35794 1.22123 0.92371 0.93856 0.94251 1.85917 1.48697 1.53851 1.33426 1.18595 1.01281 1.00535 0.85184 1.20565 1.01977 1.03689 0.93082 1.20928 0.97712 0.99605 0.97125 1.17614 0.90248 0.91594 0.92003 1.19489 1.33715 1.05793 0.90153 0.90427 1.25877 0.92665 0.94851 1.00806 1.69839 1.35468 1.12356 1.24900 0.86323 0.79537 0.80851 0.80068 1.19354 1.20406 1.18645 1.20612 1.02709 1.04871 0.93244 1.19624 0.96916 0.97808 0.98273 0.92231 0.92607 0.92649 0.91543 0.90715 0.84236 0.81755 0.89371 0.89017 0.88397 0.90030 0.90208 0.90068 0.88893 0.86031 0.90992 0.88086 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.72 37.16 0.36 -1.15 16 2 C -0.12 -1.09 5.52 -26.73 -0.15 -1.24 16 3 C 0.21 2.22 2.51 -67.95 -0.17 2.05 16 4 H 0.11 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.12 -1.13 5.16 -104.70 -0.54 -1.67 16 6 C -0.12 -1.02 9.98 -41.09 -0.41 -1.43 16 7 C -0.21 -1.66 11.20 28.90 0.32 -1.33 16 8 S 0.10 0.78 23.31 -107.50 -2.51 -1.73 16 9 C -0.17 -1.55 6.39 -35.23 -0.23 -1.78 16 10 C -0.07 -0.54 6.43 -27.44 -0.18 -0.71 16 11 C 0.11 0.92 6.18 -3.59 -0.02 0.90 16 12 N -0.61 -7.01 2.20 -165.44 -0.36 -7.37 16 13 C 0.52 8.06 7.07 -10.99 -0.08 7.98 16 14 O -0.51 -9.80 16.00 -14.36 -0.23 -10.03 16 15 C 0.05 0.85 3.57 36.01 0.13 0.98 16 16 O -0.30 -6.49 9.65 -38.64 -0.37 -6.86 16 17 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 18 C -0.17 -3.93 8.96 -39.83 -0.36 -4.29 16 19 C -0.13 -3.38 8.64 -39.25 -0.34 -3.72 16 20 C 0.09 2.31 5.57 -106.80 -0.60 1.71 16 21 C -0.46 -12.07 9.04 -37.83 -0.34 -12.41 16 22 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 23 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 24 N -0.80 -20.23 10.96 55.54 0.61 -19.62 16 25 Si 0.91 18.41 29.60 -169.99 -5.03 13.38 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 28 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 29 C -0.19 -4.79 9.74 -39.25 -0.38 -5.17 16 30 C -0.11 -2.54 9.92 -39.83 -0.40 -2.93 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.67 7.24 -51.93 -0.38 0.30 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.55 7.23 -51.93 -0.38 0.18 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.75 5.97 -51.93 -0.31 0.44 16 41 H 0.08 0.57 7.27 -51.93 -0.38 0.20 16 42 H 0.08 1.13 7.41 -51.93 -0.38 0.75 16 43 H 0.08 1.17 7.26 -51.93 -0.38 0.79 16 44 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 45 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 46 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 47 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 48 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -31.05 401.61 -12.14 -43.19 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.58 Total: 6.00 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.72 Total: -23.02 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.24 Total: -26.99 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.60 Total: -16.89 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.05 -12.14 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053849480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.483 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds